Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

85599320 .. 85608280

Gene Structure 8961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG634200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGTTACAGTGGAGAGCACCAACGTTGGCTTAAACATCTTGTTCAAGTCAGCAACCACAAAAGGGTTGAGTTACTATGTGTTCATTGTCTACTCTTATGCTTTTGCCACTGTTCTTCTCCTCCCTCTTCCTTTCATTTTTCCCAGCAGAACAAGTCTTCCTCCATTGAACTTCTCTCTTCTCTTTAAAGCTTTCCTCCTTGGACTGATCGGGTTTGTGGCAAATATATGTGCATATAAAGGTATAGATTACAGTTCACCAACTCTTGCTTCAGCTATGAGCAACCTCACTCCGGCTTTTACATTCATACTTGCCGTCATCTTCAGGATGGAAAGGCTGAGTTTGAGAAGCACCAACACTCAAGCCAAAGTAATGGGTACTCTAGTGTCAATATCAGGTGCTCTTGTAGTGGTTCTCTGTAAGGGCCCAACAGTTCTATCCACTACATCAGAGAGAGATTGGGTAAAAGGTGGCCTATTGCTCACTGTCGGGTACCTTCTGTTCTCTGCCTGGTCTATACTTCAGACTCATATCATGAAGACATACCCGGCTGAGCTAGTTTGGGCATTGTTATACAACTTGTTTGGAACCATTATATCAGCACCAGTCTGTTTATTCATAGCCGAAACAAACTTAAGTGCCTGGAGACTACGGCCTGGTGTAGCATTGATTGCCATTATATACTCGGGGTTCTTTATTTCAGCGTTCAGCACCATTGTTTCGACATGGAGCCTAAACTTGAAGGGTCCTGTGTATGTGTCAAGCTTCAAGCCATTGTCGATTGGCATTGCTGCCGCATCCAGCGTCATATTCCTCGGCGATGATCTCTTTCTCGGCAGGTCTTGCTCACTCTCTCCTTGGTGTTATTACTTCTTTCTTCAAGAGTTAATCAACTTTATAACAGGAAAAAAGCTGCAACTAACCTTTCAAAAAAAACAAAAAAGAAGCTGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

318

Amino Acids

35.07

Weight (kDa)

9.66

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 138	1.5e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	899
Acc36I	ACCTGC	1 cut(s)	828
Acc65I	GGTACC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	492
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	795
AclI	AACGTT	1 cut(s)	24
AcuI	CTGAAG	3 cut(s)	255, 307, 506
AfaI	GTAC	2 cut(s)	379, 494
AfiI	CCNNNNNNNGG	2 cut(s)	63, 292
AflII	CTTAAG	1 cut(s)	634
AgsI	TTSAA	6 cut(s)	46, 169, 742, 769, 881, 929
AjnI	CCWGG	3 cut(s)	509, 641, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	253, 285
AloI	GAACNNNNNNTCC	2 cut(s)	142, 174
AluBI	AGCT	6 cut(s)	191, 275, 556, 765, 913, 948
AluI	AGCT	6 cut(s)	191, 275, 556, 765, 913, 948
Alw21I	GWGCWC	2 cut(s)	20, 403
Alw26I	GTCTC	1 cut(s)	640
Ama87I	CYCGRG	1 cut(s)	685
AoxI	GGCC	3 cut(s)	424, 472, 653
ApaI	GGGCCC	1 cut(s)	428
ApeKI	GCWGC	2 cut(s)	791, 913
Asp718I	GGTACC	1 cut(s)	492
AspS9I	GGNCC	3 cut(s)	424, 425, 746
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	249
AvaI	CYCGRG	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	428
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BanI	GGYRCC	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	428
BbsI	GAAGAC	2 cut(s)	149, 545
Bbv12I	GWGCWC	2 cut(s)	20, 403
BbvI	GCAGC	2 cut(s)	778, 900
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	2 cut(s)	299, 668
BciT130I	CCWGG	3 cut(s)	511, 643, 657
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	2 cut(s)	383, 557
BfrI	CTTAAG	1 cut(s)	634
BfuAI	ACCTGC	1 cut(s)	828
BisI	GCNGC	3 cut(s)	792, 795, 914
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	3 cut(s)	793, 796, 915
Bme1390I	CCNGG	4 cut(s)	511, 548, 643, 657
Bme18I	GGWCC	1 cut(s)	746
BmeT110I	CYCGRG	1 cut(s)	685
BmgT120I	GGNCC	3 cut(s)	424, 425, 746
BmiI	GGNNCC	5 cut(s)	426, 494, 589, 731, 747
BmrFI	CCNGG	4 cut(s)	511, 548, 643, 657
BmsI	GCATC	1 cut(s)	806
BpiI	GAAGAC	2 cut(s)	149, 545
BpmI	CTGGAG	1 cut(s)	664
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	3 cut(s)	199, 814, 857
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 292
Bse1I	ACTGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	786
BseBI	CCWGG	3 cut(s)	511, 643, 657
BseDI	CCNNGG	3 cut(s)	199, 814, 857
BseGI	GGATG	2 cut(s)	333, 797
BseLI	CCNNNNNNNGG	2 cut(s)	63, 292
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	2 cut(s)	329, 543
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	778, 900
BseYI	CCCAGC	1 cut(s)	143
BshFI	GGCC	3 cut(s)	426, 474, 655
BshNI	GGYRCC	1 cut(s)	492
BsiHKAI	GWGCWC	2 cut(s)	20, 403
BsiHKCI	CYCGRG	1 cut(s)	685
BsiSI	CCGG	2 cut(s)	293, 548
BslI	CCNNNNNNNGG	2 cut(s)	63, 292
BsmAI	GTCTC	1 cut(s)	640
BsnI	GGCC	3 cut(s)	426, 474, 655
BsoBI	CYCGRG	1 cut(s)	685
Bsp120I	GGGCCC	1 cut(s)	424
Bsp1286I	GDGCHC	3 cut(s)	20, 403, 428
Bsp143I	GATC	2 cut(s)	207, 823
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	1 cut(s)	795
BspANI	GGCC	3 cut(s)	426, 474, 655
BspCNI	CTCAG	2 cut(s)	330, 544
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	5 cut(s)	426, 494, 589, 731, 747
BspMI	ACCTGC	1 cut(s)	828
BspT107I	GGYRCC	1 cut(s)	492
BspTI	CTTAAG	1 cut(s)	634
BsrDI	GCAATG	1 cut(s)	786
BsrI	ACTGG	1 cut(s)	605
BssECI	CCNNGG	3 cut(s)	199, 814, 857
BssMI	GATC	2 cut(s)	207, 823
BssT1I	CCWWGG	2 cut(s)	199, 857
Bst2UI	CCWGG	3 cut(s)	511, 643, 657
Bst4CI	ACNGT	5 cut(s)	10, 112, 254, 433, 487
Bst6I	CTCTTC	2 cut(s)	132, 183
BstAFI	CTTAAG	1 cut(s)	634
BstAPI	GCANNNNNTGC	2 cut(s)	671, 843
BstDEI	CTNAG	2 cut(s)	338, 552
BstF5I	GGATG	2 cut(s)	333, 797
BstKTI	GATC	2 cut(s)	210, 826
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	2 cut(s)	207, 823
BstMWI	GCNNNNNNNGC	2 cut(s)	671, 843
BstNI	CCWGG	3 cut(s)	511, 643, 657
BstSCI	CCNGG	4 cut(s)	509, 546, 641, 655
BstSLI	GKGCMC	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	778, 900
BstV2I	GAAGAC	2 cut(s)	149, 545
BstXI	CCANNNNNNTGG	1 cut(s)	373
BsuRI	GGCC	3 cut(s)	426, 474, 655
BtgZI	GCGATG	1 cut(s)	834
BtsCI	GGATG	2 cut(s)	333, 797
BtsIMutI	CAGTG	3 cut(s)	15, 108, 483
BveI	ACCTGC	1 cut(s)	828
CciI	TCATGA	1 cut(s)	534
Cfr13I	GGNCC	3 cut(s)	424, 425, 746
CseI	GACGC	1 cut(s)	793
Csp6I	GTAC	2 cut(s)	378, 493
CviAII	CATG	2 cut(s)	535, 726
CviQI	GTAC	2 cut(s)	378, 493
DdeI	CTNAG	2 cut(s)	338, 552
DpnI	GATC	2 cut(s)	209, 825
DpnII	GATC	2 cut(s)	207, 823
DraI	TTTAAA	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	132, 183
EarI	CTCTTC	2 cut(s)	132, 183
Eco130I	CCWWGG	2 cut(s)	199, 857
Eco24I	GRGCYC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	746
Eco57I	CTGAAG	3 cut(s)	255, 307, 506
Eco88I	CYCGRG	1 cut(s)	685
EcoO109I	RGGNCCY	2 cut(s)	424, 746
EcoRII	CCWGG	3 cut(s)	509, 641, 655
EcoT14I	CCWWGG	2 cut(s)	199, 857
EcoT38I	GRGCYC	1 cut(s)	428
ErhI	CCWWGG	2 cut(s)	199, 857
FaeI	CATG	2 cut(s)	538, 729
FatI	CATG	2 cut(s)	534, 725
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	792, 795, 914
FokI	GGATG	2 cut(s)	340, 784
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	3 cut(s)	792, 795, 914
FspBI	CTAG	2 cut(s)	383, 557
GluI	GCNGC	3 cut(s)	792, 795, 914
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	664
HaeIII	GGCC	3 cut(s)	426, 474, 655
HapII	CCGG	2 cut(s)	293, 548
HgaI	GACGC	1 cut(s)	793
Hin1II	CATG	2 cut(s)	538, 729
HindIII	AAGCTT	2 cut(s)	189, 763
HinfI	GANTC	1 cut(s)	526
HpaII	CCGG	2 cut(s)	293, 548
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	2 cut(s)	91, 257
Hpy188I	TCNGA	2 cut(s)	451, 525
Hpy188III	TCNNGA	3 cut(s)	325, 535, 881
Hpy8I	GTNNAC	2 cut(s)	91, 257
HpyAV	CCTTC	2 cut(s)	506, 736
HpyCH4III	ACNGT	5 cut(s)	10, 112, 254, 433, 487
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	233, 916
HpyF10VI	GCNNNNNNNGC	2 cut(s)	671, 843
HpyF3I	CTNAG	2 cut(s)	338, 552
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	538, 729
KpnI	GGTACC	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	207, 823
LmnI	GCTCC	1 cut(s)	729
Lsp1109I	GCAGC	2 cut(s)	778, 900
LweI	GCATC	1 cut(s)	806
MaeI	CTAG	2 cut(s)	383, 557
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	4, 71
MalI	GATC	2 cut(s)	209, 825
MboI	GATC	2 cut(s)	207, 823
MboII	GAAGA	7 cut(s)	107, 119, 149, 170, 313, 550, 869
MhlI	GDGCHC	3 cut(s)	20, 403, 428
MlyI	GAGTC	1 cut(s)	520
MnlI	CCTC	6 cut(s)	131, 135, 171, 206, 296, 824
MseI	TTAA	4 cut(s)	32, 186, 635, 887
MspCI	CTTAAG	1 cut(s)	634
MspI	CCGG	2 cut(s)	293, 548
MspR9I	CCNGG	4 cut(s)	511, 548, 643, 657
MvaI	CCWGG	3 cut(s)	511, 643, 657
MwoI	GCNNNNNNNGC	2 cut(s)	671, 843
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	2 cut(s)	207, 823
NlaIII	CATG	2 cut(s)	538, 729
NlaIV	GGNNCC	5 cut(s)	426, 494, 589, 731, 747
NmeAIII	GCCGAG	2 cut(s)	795, 813
PagI	TCATGA	1 cut(s)	534
PkrI	GCNGC	3 cut(s)	793, 796, 915
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	746
PsiI	TTATAA	1 cut(s)	899
Psp1406I	AACGTT	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	746
Psp6I	CCWGG	3 cut(s)	509, 641, 655
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	3 cut(s)	509, 641, 655
PspN4I	GGNNCC	5 cut(s)	426, 494, 589, 731, 747
PspOMI	GGGCCC	1 cut(s)	424
PspPI	GGNCC	3 cut(s)	424, 425, 746
PspPPI	RGGWCCY	1 cut(s)	746
PsrI	GAACNNNNNNTAC	2 cut(s)	485, 517
RsaI	GTAC	2 cut(s)	379, 494
RsaNI	GTAC	2 cut(s)	378, 493
SaqAI	TTAA	4 cut(s)	32, 186, 635, 887
SatI	GCNGC	3 cut(s)	792, 795, 914
Sau3AI	GATC	2 cut(s)	207, 823
Sau96I	GGNCC	3 cut(s)	424, 425, 746
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	4 cut(s)	511, 548, 643, 657
SduI	GDGCHC	3 cut(s)	20, 403, 428
SfaNI	GCATC	1 cut(s)	806
SinI	GGWCC	1 cut(s)	746
SmlI	CTYRAG	2 cut(s)	360, 634
SmoI	CTYRAG	2 cut(s)	360, 634
SsiI	CCGC	1 cut(s)	795
SspMI	CTAG	2 cut(s)	383, 557
StyD4I	CCNGG	4 cut(s)	509, 546, 641, 655
StyI	CCWWGG	2 cut(s)	199, 857
TaaI	ACNGT	5 cut(s)	10, 112, 254, 433, 487
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	722, 779
TauI	GCSGC	1 cut(s)	797
Tru1I	TTAA	4 cut(s)	32, 186, 635, 887
Tru9I	TTAA	4 cut(s)	32, 186, 635, 887
TscAI	CASTG	3 cut(s)	15, 115, 490
TseI	GCWGC	2 cut(s)	791, 913
TspDTI	ATGAA	5 cut(s)	73, 124, 295, 551, 607
TspRI	CASTG	3 cut(s)	15, 115, 490
Vha464I	CTTAAG	1 cut(s)	634
VpaK11BI	GGWCC	1 cut(s)	746
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	383, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.