Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Forward (+)

1770749 .. 1772932

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGATGGAGGAGGTGGTTTCAAAAGGATGTTCTGCCGTTCACGGCCATGGTTACGGTGGAGTGCACAAACGTGGGATTAAACGTCCTATTCAAAGCAGCAACCTTAAAAGGTCTAAGCTACTATGTTTTCATCGTCTACTCCAACCTAGTTGCCACTCTTGTCCTCCTCCCTCTGCTTTTCTTGTTTCCAAATCCCAGAACAGGACTTCCTTCTTTCAACCTCTCTCTCCTCCTCAAAGTTTTCCTCCTTGGACTGATCGGGTTTTTGGCTGATTTATGTGGATATATAGGCATAAATTACAGTTCACCAACTCTTGATTCAGCTATGAGCAACCTCACACCGGCGTTTACCTTCATACTCGCCGTCTTCTTCAGGATGGAGAGTTTAGCTCTGAGAAGTTACAGCACCCAAGCTAAAATCATGGGCACTTTAGTATCAATATCAGGGGCATTGGTAGTGGTTCTTTACAAGGGCCCTACGATTTTATCCACTCCATCTGATCCTAATCCATCTCCAATGTTAAGCACACCACCAACAAATTGGGTAATTGGAGGCCTCCTATGTGCTCTTCAGTATCTTCTCTACTCAACTTGGTATATACTTCAGACCCATGTCATGAAGGCATATCCAGCTGAGATAGTTTTAGTCTTCTTATACAACTTGTGTGGGACAATTATATCAGCACCAGTATGTTTTATAGCAGAAACAAACTTGAGTGCCTGGTGGCTAAGGCCTGATATTGCATTGGTCGCCATTATTTACTCGGGATGCCTTGGTTCTTCCTTCGGTTCGCTTGTTCACACTTGGGCCCTGCACTTGAAGGGGCCTGTCTATATATCGATCTTCAAGCCGTTGTCTATAGCCATTGCTGCTGCTTTGAGTGTCATTTTCCTTGGTGATGCTCTCTCTCTCGGCAGTATTGTTGGAGCTATAATTCTGTCCATGGGGTTTTATGCTGTAATATGGGGTAAATCGAAGGAAGAACAAATGAAACCATTGCCTATTGGTATGGGAAAGGTCCCTCTGTTGGAAAGCTACAAAGTTGAAAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

353

Amino Acids

38.42

Weight (kDa)

8.92

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	497
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	3 cut(s)	358, 557, 590
AfiI	CCNNNNNNNGG	3 cut(s)	203, 343, 1030
AgsI	TTSAA	6 cut(s)	23, 94, 220, 823, 850, 1049
AjnI	CCWGG	1 cut(s)	722
AjuI	GAANNNNNNNTTGG	2 cut(s)	304, 336
AleI	CACNNNNGTG	1 cut(s)	71
AloI	GAACNNNNNNTCC	2 cut(s)	193, 225
AluBI	AGCT	7 cut(s)	120, 326, 392, 416, 635, 932, 1038
AluI	AGCT	7 cut(s)	120, 326, 392, 416, 635, 932, 1038
Alw21I	GWGCWC	2 cut(s)	68, 571
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	766
AoxI	GGCC	6 cut(s)	45, 475, 556, 734, 810, 827
ApaI	GGGCCC	2 cut(s)	479, 814
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	3 cut(s)	98, 872, 875
AspS9I	GGNCC	6 cut(s)	475, 476, 810, 811, 827, 1021
AsuHPI	GGTGA	2 cut(s)	300, 911
AvaI	CYCGRG	1 cut(s)	766
AvaII	GGWCC	1 cut(s)	1021
BaeGI	GKGCMC	4 cut(s)	68, 431, 479, 814
BaeI	ACNNNNGTAYC	2 cut(s)	420, 453
BanII	GRGCYC	2 cut(s)	479, 814
BbsI	GAAGAC	2 cut(s)	361, 643
Bbv12I	GWGCWC	2 cut(s)	68, 571
BbvI	GCAGC	3 cut(s)	110, 859, 862
BccI	CCATC	3 cut(s)	373, 505, 520
BceAI	ACGGC	4 cut(s)	22, 60, 350, 838
BciT130I	CCWGG	1 cut(s)	724
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	861
BisI	GCNGC	3 cut(s)	99, 873, 876
BlsI	GCNGC	3 cut(s)	100, 874, 877
Bme1390I	CCNGG	1 cut(s)	724
Bme18I	GGWCC	1 cut(s)	1021
BmeT110I	CYCGRG	1 cut(s)	766
BmgT120I	GGNCC	6 cut(s)	475, 476, 810, 811, 827, 1021
BmiI	GGNNCC	4 cut(s)	477, 812, 828, 1023
BmrFI	CCNGG	1 cut(s)	724
BmsI	GCATC	2 cut(s)	761, 892
BoxI	GACNNNNGTC	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	361, 643
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
Bpu10I	CCTNAGC	1 cut(s)	731
BpuEI	CTTGAG	1 cut(s)	736
Bsa29I	ATCGAT	1 cut(s)	842
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	5 cut(s)	48, 250, 775, 895, 945
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 343, 1030
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	2 cut(s)	867, 998
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	724
BseCI	ATCGAT	1 cut(s)	842
BseDI	CCNNGG	5 cut(s)	48, 250, 775, 895, 945
BseGI	GGATG	4 cut(s)	11, 34, 384, 776
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	3 cut(s)	203, 343, 1030
BseMI	GCAATG	2 cut(s)	867, 998
BseMII	CTCAG	2 cut(s)	386, 627
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	4 cut(s)	25, 158, 221, 224
BseSI	GKGCMC	4 cut(s)	68, 431, 479, 814
BseXI	GCAGC	3 cut(s)	110, 859, 862
BsgI	GTGCAG	1 cut(s)	800
BshFI	GGCC	6 cut(s)	47, 477, 558, 736, 812, 829
BshVI	ATCGAT	1 cut(s)	842
BsiHKAI	GWGCWC	2 cut(s)	68, 571
BsiHKCI	CYCGRG	1 cut(s)	766
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	2 cut(s)	685, 1007
BslI	CCNNNNNNNGG	3 cut(s)	203, 343, 1030
BsmFI	GGGAC	2 cut(s)	685, 1007
BsnI	GGCC	6 cut(s)	47, 477, 558, 736, 812, 829
BsoBI	CYCGRG	1 cut(s)	766
Bsp120I	GGGCCC	2 cut(s)	475, 810
Bsp1286I	GDGCHC	5 cut(s)	68, 431, 479, 571, 814
Bsp143I	GATC	3 cut(s)	258, 502, 843
Bsp19I	CCATGG	2 cut(s)	48, 945
BspANI	GGCC	6 cut(s)	47, 477, 558, 736, 812, 829
BspCNI	CTCAG	2 cut(s)	387, 628
BspDI	ATCGAT	1 cut(s)	842
BspHI	TCATGA	1 cut(s)	618
BspLI	GGNNCC	4 cut(s)	477, 812, 828, 1023
BspPI	GGATC	1 cut(s)	497
BspQI	GCTCTTC	1 cut(s)	576
BsrDI	GCAATG	2 cut(s)	867, 998
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	689
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	5 cut(s)	48, 250, 775, 895, 945
BssMI	GATC	3 cut(s)	258, 502, 843
BssT1I	CCWWGG	5 cut(s)	48, 250, 775, 895, 945
Bst2UI	CCWGG	1 cut(s)	724
Bst4CI	ACNGT	2 cut(s)	58, 305
Bst6I	CTCTTC	1 cut(s)	576
BstDEI	CTNAG	4 cut(s)	116, 395, 636, 731
BstDSI	CCRYGG	2 cut(s)	48, 945
BstF5I	GGATG	4 cut(s)	11, 34, 384, 776
BstKTI	GATC	3 cut(s)	261, 505, 846
BstMBI	GATC	3 cut(s)	258, 502, 843
BstMWI	GCNNNNNNNGC	3 cut(s)	632, 752, 872
BstNI	CCWGG	1 cut(s)	724
BstPAI	GACNNNNGTC	1 cut(s)	614
BstSCI	CCNGG	1 cut(s)	722
BstSFI	CTRYAG	1 cut(s)	861
BstSLI	GKGCMC	4 cut(s)	68, 431, 479, 814
BstV1I	GCAGC	3 cut(s)	110, 859, 862
BstV2I	GAAGAC	2 cut(s)	361, 643
BstXI	CCANNNNNNTGG	1 cut(s)	543
Bsu15I	ATCGAT	1 cut(s)	842
BsuRI	GGCC	6 cut(s)	47, 477, 558, 736, 812, 829
BsuTUI	ATCGAT	1 cut(s)	842
BtgI	CCRYGG	2 cut(s)	48, 945
BtsCI	GGATG	4 cut(s)	11, 34, 384, 776
CciI	TCATGA	1 cut(s)	618
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	6 cut(s)	475, 476, 810, 811, 827, 1021
ClaI	ATCGAT	1 cut(s)	842
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviAII	CATG	5 cut(s)	49, 424, 614, 619, 946
DdeI	CTNAG	4 cut(s)	116, 395, 636, 731
DpnI	GATC	3 cut(s)	260, 504, 845
DpnII	GATC	3 cut(s)	258, 502, 843
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	5 cut(s)	48, 250, 775, 895, 945
Eco147I	AGGCCT	2 cut(s)	558, 736
Eco24I	GRGCYC	2 cut(s)	479, 814
Eco47I	GGWCC	1 cut(s)	1021
Eco57I	CTGAAG	3 cut(s)	358, 557, 590
Eco88I	CYCGRG	1 cut(s)	766
EcoO109I	RGGNCCY	5 cut(s)	475, 476, 811, 827, 1021
EcoRII	CCWGG	1 cut(s)	722
EcoT14I	CCWWGG	5 cut(s)	48, 250, 775, 895, 945
EcoT38I	GRGCYC	2 cut(s)	479, 814
ErhI	CCWWGG	5 cut(s)	48, 250, 775, 895, 945
FaeI	CATG	5 cut(s)	52, 427, 617, 622, 949
FaqI	GGGAC	2 cut(s)	685, 1007
FatI	CATG	5 cut(s)	48, 423, 613, 618, 945
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	99, 873, 876
FokI	GGATG	4 cut(s)	18, 41, 391, 783
FriOI	GRGCYC	2 cut(s)	479, 814
Fsp4HI	GCNGC	3 cut(s)	99, 873, 876
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	3 cut(s)	99, 873, 876
HaeIII	GGCC	6 cut(s)	47, 477, 558, 736, 812, 829
HapII	CCGG	1 cut(s)	344
Hin1II	CATG	5 cut(s)	52, 427, 617, 622, 949
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	300, 911
Hpy166II	GTNNAC	6 cut(s)	42, 66, 139, 308, 351, 802
Hpy188I	TCNGA	3 cut(s)	396, 502, 609
Hpy188III	TCNNGA	4 cut(s)	317, 376, 619, 768
Hpy8I	GTNNAC	6 cut(s)	42, 66, 139, 308, 351, 802
HpyAV	CCTTC	6 cut(s)	222, 364, 616, 796, 817, 973
HpyCH4III	ACNGT	2 cut(s)	58, 305
HpyCH4IV	ACGT	2 cut(s)	72, 84
HpyCH4V	TGCA	3 cut(s)	66, 746, 817
HpyF10VI	GCNNNNNNNGC	3 cut(s)	632, 752, 872
HpyF3I	CTNAG	4 cut(s)	116, 395, 636, 731
HpySE526I	ACGT	2 cut(s)	72, 84
Hsp92II	CATG	5 cut(s)	52, 427, 617, 622, 949
Kzo9I	GATC	3 cut(s)	258, 502, 843
LguI	GCTCTTC	1 cut(s)	576
LmnI	GCTCC	1 cut(s)	929
Lsp1109I	GCAGC	3 cut(s)	110, 859, 862
LweI	GCATC	2 cut(s)	761, 892
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	2 cut(s)	72, 84
MaeIII	GTNAC	2 cut(s)	52, 401
MalI	GATC	3 cut(s)	260, 504, 845
MboI	GATC	3 cut(s)	258, 502, 843
MboII	GAAGA	8 cut(s)	361, 364, 563, 572, 643, 774, 838, 995
MhlI	GDGCHC	5 cut(s)	68, 431, 479, 571, 814
MluCI	AATT	5 cut(s)	298, 541, 549, 675, 936
MmeI	TCCRAC	3 cut(s)	168, 907, 1011
MseI	TTAA	3 cut(s)	80, 107, 524
MslI	CAYNNNNRTG	3 cut(s)	47, 71, 691
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	724
MvaI	CCWGG	1 cut(s)	724
MwoI	GCNNNNNNNGC	3 cut(s)	632, 752, 872
NcoI	CCATGG	2 cut(s)	48, 945
NdeII	GATC	3 cut(s)	258, 502, 843
NlaIII	CATG	5 cut(s)	52, 427, 617, 622, 949
NlaIV	GGNNCC	4 cut(s)	477, 812, 828, 1023
NmeAIII	GCCGAG	1 cut(s)	894
OliI	CACNNNNGTG	1 cut(s)	71
PagI	TCATGA	1 cut(s)	618
PceI	AGGCCT	2 cut(s)	558, 736
PciSI	GCTCTTC	1 cut(s)	576
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	100, 874, 877
PpuMI	RGGWCCY	1 cut(s)	1021
PshAI	GACNNNNGTC	1 cut(s)	614
Psp5II	RGGWCCY	1 cut(s)	1021
Psp6I	CCWGG	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	722
PspN4I	GGNNCC	4 cut(s)	477, 812, 828, 1023
PspOMI	GGGCCC	2 cut(s)	475, 810
PspPI	GGNCC	6 cut(s)	475, 476, 810, 811, 827, 1021
PspPPI	RGGWCCY	1 cut(s)	1021
PvuII	CAGCTG	1 cut(s)	635
RseI	CAYNNNNRTG	3 cut(s)	47, 71, 691
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	80, 107, 524
SatI	GCNGC	3 cut(s)	99, 873, 876
Sau3AI	GATC	3 cut(s)	258, 502, 843
Sau96I	GGNCC	6 cut(s)	475, 476, 810, 811, 827, 1021
ScrFI	CCNGG	1 cut(s)	724
SduI	GDGCHC	5 cut(s)	68, 431, 479, 571, 814
SfaNI	GCATC	2 cut(s)	761, 892
SfcI	CTRYAG	1 cut(s)	861
SgrAI	CRCCGGYG	1 cut(s)	343
SinI	GGWCC	1 cut(s)	1021
SmiMI	CAYNNNNRTG	3 cut(s)	47, 71, 691
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
Sse9I	AATT	5 cut(s)	298, 541, 549, 675, 936
SseBI	AGGCCT	2 cut(s)	558, 736
SspMI	CTAG	1 cut(s)	149
StuI	AGGCCT	2 cut(s)	558, 736
StyD4I	CCNGG	1 cut(s)	722
StyI	CCWWGG	5 cut(s)	48, 250, 775, 895, 945
TaaI	ACNGT	2 cut(s)	58, 305
TaiI	ACGT	2 cut(s)	75, 87
TaqI	TCGA	2 cut(s)	842, 977
TasI	AATT	5 cut(s)	298, 541, 549, 675, 936
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	3 cut(s)	80, 107, 524
Tru9I	TTAA	3 cut(s)	80, 107, 524
TseI	GCWGC	3 cut(s)	98, 872, 875
TspDTI	ATGAA	4 cut(s)	121, 346, 635, 1007
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	1021
XcmI	CCANNNNNNNNNTGG	2 cut(s)	55, 540
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.