Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Forward (+)

67785655 .. 67786277

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0550600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAATGGTCCAGCCCAAAACACCACCGTTAAGCTTCTGAGCCGGCGGTTCAATGGCTATGAGCCTTTGGATGAAGCGATGGGAAGCGAAAACGTGCAAGACCCGCCGCAGAGATCGATGTCGTTTAAGCGCAAGAAAGTGGCGGCTTTTCCTTTGAGGACTAGAGAGGATGAAGCCAAGCAACGACGGCAGATATTCCTCAACTCCTACAAGTTTGAAACGGCGGATAAAACGCAGCGGTCGGTGTGTAGTCGGAAGATGAACAAGGTGGTTTGTAAGGTCAAGACATCAGCAGCGAAGCTCCTGTCATCGTTTTTGGGAGCTGGTGCTTTCAGATCTTGTAATTGTCGTTTGGCCATTCAAGCTTTCTCTCCTAGACCCCGTAGCAAGTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

132

Amino Acids

15.07

Weight (kDa)

10.54

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	46, 104, 107, 143, 224, 238
AcoI	YGGCCR	1 cut(s)	354
AgsI	TTSAA	3 cut(s)	52, 218, 362
AluBI	AGCT	4 cut(s)	34, 301, 323, 365
AluI	AGCT	4 cut(s)	34, 301, 323, 365
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	2 cut(s)	235, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	247, 305
BccI	CCATC	1 cut(s)	73
BceAI	ACGGC	2 cut(s)	203, 237
BfaI	CTAG	2 cut(s)	162, 375
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	4 cut(s)	107, 144, 236, 294
BlsI	GCNGC	4 cut(s)	108, 145, 237, 295
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
Bsa29I	ATCGAT	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	116
BseGI	GGATG	2 cut(s)	76, 175
BseMII	CTCAG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	247, 305
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	43
BsnI	GGCC	1 cut(s)	356
Bsp143I	GATC	2 cut(s)	113, 335
BspACI	CCGC	6 cut(s)	46, 104, 107, 143, 224, 238
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	30
BspDI	ATCGAT	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	42
BssMI	GATC	2 cut(s)	113, 335
Bst4CI	ACNGT	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	76, 175
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	2 cut(s)	116, 338
BstMBI	GATC	2 cut(s)	113, 335
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 187, 362
BstV1I	GCAGC	2 cut(s)	247, 305
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
Bsu15I	ATCGAT	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	356
BsuTUI	ATCGAT	1 cut(s)	116
BtgZI	GCGATG	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	76, 175
Cac8I	GCNNGC	1 cut(s)	44
CfoI	GCGC	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	8
ClaI	ATCGAT	1 cut(s)	116
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	2 cut(s)	115, 337
DpnII	GATC	2 cut(s)	113, 335
EaeI	YGGCCR	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	8
FaiI	YATR	1 cut(s)	60
FauI	CCCGC	1 cut(s)	111
Fnu4HI	GCNGC	4 cut(s)	107, 144, 236, 294
FokI	GGATG	2 cut(s)	83, 182
Fsp4HI	GCNGC	4 cut(s)	107, 144, 236, 294
FspBI	CTAG	2 cut(s)	162, 375
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	4 cut(s)	107, 144, 236, 294
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	132
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HindIII	AAGCTT	2 cut(s)	32, 363
HpaII	CCGG	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	39, 255, 335
Hpy188III	TCNNGA	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	189
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 187, 362
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	93
HspAI	GCGC	1 cut(s)	130
KroI	GCCGGC	1 cut(s)	42
KroNI	GCCGGC	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	113, 335
LmnI	GCTCC	2 cut(s)	306, 320
LpnPI	CCDG	4 cut(s)	24, 56, 309, 317
Lsp1109I	GCAGC	2 cut(s)	247, 305
MaeI	CTAG	2 cut(s)	162, 375
MaeII	ACGT	1 cut(s)	93
MalI	GATC	2 cut(s)	115, 337
MboI	GATC	2 cut(s)	113, 335
MboII	GAAGA	1 cut(s)	268
MflI	RGATCY	1 cut(s)	335
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	1 cut(s)	343
MluNI	TGGCCA	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	3 cut(s)	150, 160, 209
Mox20I	TGGCCA	1 cut(s)	356
MroNI	GCCGGC	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	2 cut(s)	30, 126
Msp20I	TGGCCA	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	3 cut(s)	103, 187, 362
NaeI	GCCGGC	1 cut(s)	44
NdeII	GATC	2 cut(s)	113, 335
NgoMIV	GCCGGC	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	108, 145, 237, 295
PspPI	GGNCC	1 cut(s)	8
PsuI	RGATCY	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	30, 126
SatI	GCNGC	4 cut(s)	107, 144, 236, 294
Sau3AI	GATC	2 cut(s)	113, 335
Sau96I	GGNCC	1 cut(s)	8
SetI	ASST	7 cut(s)	36, 96, 270, 282, 303, 325, 367
SinI	GGWCC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	6 cut(s)	46, 104, 107, 143, 224, 238
SspMI	CTAG	2 cut(s)	162, 375
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	116
TasI	AATT	1 cut(s)	343
TauI	GCSGC	2 cut(s)	109, 146
Tru1I	TTAA	2 cut(s)	30, 126
Tru9I	TTAA	2 cut(s)	30, 126
TseI	GCWGC	2 cut(s)	235, 293
TspDTI	ATGAA	4 cut(s)	17, 87, 186, 275
VpaK11BI	GGWCC	1 cut(s)	8
XspI	CTAG	2 cut(s)	162, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.