Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

84605463 .. 84607976

Gene Structure 2514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAATGGATGTCTGGTCACAAGGATGTTCTGCCGTTCACCACCATGATTATCGTGGAGTGCATCAAAGTGGGGTCAGGCGTCTTCTTCAAGGCAGCTGCCTTAAGAGGGTTGAGCTACTATGTTCTCATTGTCTACTCTTATGCAATTGCCACCATTCTCCTCCTCCCTCTGCTTTTCATCTTTCGCAGAACAGGGCTTCCACCATTCAAGCTCTCTCTCATATTTAAACTCTTCCTCCTTGGGATAATCGGGTTTTCGGGTAGTTTATGTGTATATAAAGGTATAGAATACAGTTCACCAACTCTTGCTTCAGCTATTGGTAACCTTTCCCCAGCTTTTATCTTCATACTTGCTGTAACCTTCAGTATGGAAAGACTAAATTGGAGAAGCAGAAGCACACGAGCCAAAGTGATGGGTACTCTAGTATCAATATCAGGCGCACTAGTAGTAGTGCTCTATAAGGCGCCCAACAATTCTATCACCTACGACTCCATCCATTCTCGGAATGTCAGAAAGGAGTGGGTAAAAGGTGGCTTATTACTTACTCTTGGATACCTTCTCTTCTCTATGTGGGCTATCCTTCAGACCCATATCATGAAGACATACCCAGATGAGCTAGTTCTGGCCTTCTTATACAACTTGTGTGGGACAATTGTATCAGCACCAACATGTTTGATAGCAGAGAAAAACTTGATTGCCTGGATATTAACACCCGGTATACCATTGCTTGCCACTATATACCCAGTAAGAAACTATCCAGTCGTGTTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

258

Amino Acids

28.66

Weight (kDa)

9.65

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	18 - 152	2.5e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	466
AccI	GTMKAC	2 cut(s)	135, 721
AcuI	CTGAAG	3 cut(s)	297, 349, 569
AcyI	GRCGYC	2 cut(s)	81, 467
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflII	CTTAAG	1 cut(s)	103
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	2 cut(s)	91, 211
AhlI	ACTAGT	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	701
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AloI	GAACNNNNNNTCC	2 cut(s)	184, 216
AluBI	AGCT	6 cut(s)	98, 117, 214, 317, 338, 619
AluI	AGCT	6 cut(s)	98, 117, 214, 317, 338, 619
Alw21I	GWGCWC	1 cut(s)	459
AoxI	GGCC	1 cut(s)	627
ApeKI	GCWGC	2 cut(s)	95, 98
AspLEI	GCGC	2 cut(s)	443, 469
AsuC2I	CCSGG	1 cut(s)	717
AsuHPI	GGTGA	3 cut(s)	31, 291, 475
BaeI	ACNNNNGTAYC	6 cut(s)	411, 411, 444, 444, 642, 675
BanI	GGYRCC	1 cut(s)	466
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	2 cut(s)	76, 608
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	85, 107
BccI	CCATC	2 cut(s)	409, 503
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	703
BciVI	GTATCC	1 cut(s)	548
BcnI	CCSGG	1 cut(s)	717
BcuI	ACTAGT	1 cut(s)	445
BfaI	CTAG	3 cut(s)	425, 446, 620
BfoI	RGCGCY	1 cut(s)	470
BfrI	CTTAAG	1 cut(s)	103
BfuI	GTATCC	1 cut(s)	548
BisI	GCNGC	2 cut(s)	96, 99
BlsI	GCNGC	2 cut(s)	97, 100
Bme1390I	CCNGG	2 cut(s)	703, 717
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	2 cut(s)	703, 717
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	740
BpiI	GAAGAC	2 cut(s)	76, 608
BpuMI	CCSGG	1 cut(s)	717
BsaHI	GRCGYC	2 cut(s)	81, 467
BsaJI	CCNNGG	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	2 cut(s)	746, 761
Bse3DI	GCAATG	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	703
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	3 cut(s)	15, 31, 495
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	725
BseNI	ACTGG	2 cut(s)	746, 761
BseRI	GAGGAG	2 cut(s)	152, 155
BseXI	GCAGC	2 cut(s)	85, 107
BseYI	CCCAGC	1 cut(s)	334
BshFI	GGCC	1 cut(s)	629
BshNI	GGYRCC	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	717
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	664
BsnI	GGCC	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	459
BspANI	GGCC	1 cut(s)	629
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	468
BspT107I	GGYRCC	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	725
BsrI	ACTGG	2 cut(s)	746, 761
BssECI	CCNNGG	1 cut(s)	241
BssNAI	GTATAC	1 cut(s)	722
BssNI	GRCGYC	2 cut(s)	81, 467
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	241
Bst1107I	GTATAC	1 cut(s)	722
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	703
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	239, 569
BstACI	GRCGYC	2 cut(s)	81, 467
BstAFI	CTTAAG	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	732
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	3 cut(s)	15, 31, 495
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	2 cut(s)	443, 469
BstNI	CCWGG	1 cut(s)	703
BstNSI	RCATGY	1 cut(s)	675
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	701, 715
BstV1I	GCAGC	2 cut(s)	85, 107
BstV2I	GAAGAC	2 cut(s)	76, 608
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstZ17I	GTATAC	1 cut(s)	722
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	1 cut(s)	629
BtsCI	GGATG	3 cut(s)	15, 31, 495
Cac8I	GCNNGC	1 cut(s)	732
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	2 cut(s)	443, 469
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	420
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	3 cut(s)	46, 598, 672
CviQI	GTAC	1 cut(s)	420
DinI	GGCGCC	1 cut(s)	468
DraI	TTTAAA	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	239, 569
EarI	CTCTTC	2 cut(s)	239, 569
Eco130I	CCWWGG	1 cut(s)	241
Eco57I	CTGAAG	3 cut(s)	297, 349, 569
Eco91I	GGTNACC	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	701
EcoT14I	CCWWGG	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	468
EheI	GGCGCC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	3 cut(s)	49, 601, 675
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	3 cut(s)	45, 597, 671
FblI	GTMKAC	2 cut(s)	135, 721
Fnu4HI	GCNGC	2 cut(s)	96, 99
FokI	GGATG	3 cut(s)	22, 38, 482
Fsp4HI	GCNGC	2 cut(s)	96, 99
FspBI	CTAG	3 cut(s)	425, 446, 620
GlaI	GCGC	2 cut(s)	442, 468
GluI	GCNGC	2 cut(s)	96, 99
GsaI	CCCAGC	1 cut(s)	338
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	629
HapII	CCGG	1 cut(s)	717
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	2 cut(s)	443, 469
Hin1I	GRCGYC	2 cut(s)	81, 467
Hin1II	CATG	3 cut(s)	49, 601, 675
Hin6I	GCGC	2 cut(s)	441, 467
HinP1I	GCGC	2 cut(s)	441, 467
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HinfI	GANTC	1 cut(s)	491
HpaI	GTTAAC	1 cut(s)	771
HpaII	CCGG	1 cut(s)	717
HphI	GGTGA	3 cut(s)	31, 291, 475
Hpy166II	GTNNAC	5 cut(s)	39, 136, 299, 722, 771
Hpy188I	TCNGA	3 cut(s)	507, 515, 588
Hpy188III	TCNNGA	1 cut(s)	598
Hpy8I	GTNNAC	5 cut(s)	39, 136, 299, 722, 771
HpyAV	CCTTC	4 cut(s)	373, 569, 593, 640
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	63, 146
Hsp92I	GRCGYC	2 cut(s)	81, 467
Hsp92II	CATG	3 cut(s)	49, 601, 675
HspAI	GCGC	2 cut(s)	441, 467
KasI	GGCGCC	1 cut(s)	466
KspAI	GTTAAC	1 cut(s)	771
Lsp1109I	GCAGC	2 cut(s)	85, 107
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	3 cut(s)	425, 446, 620
MaeIII	GTNAC	3 cut(s)	17, 323, 358
MboII	GAAGA	6 cut(s)	76, 79, 226, 337, 556, 613
MfeI	CAATTG	2 cut(s)	147, 654
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	4 cut(s)	147, 382, 475, 654
Mly113I	GGCGCC	1 cut(s)	467
MlyI	GAGTC	1 cut(s)	485
MnlI	CCTC	5 cut(s)	101, 173, 176, 180, 248
MseI	TTAA	4 cut(s)	104, 228, 710, 770
MslI	CAYNNNNRTG	4 cut(s)	24, 44, 68, 670
MspA1I	CMGCKG	1 cut(s)	98
MspCI	CTTAAG	1 cut(s)	103
MspI	CCGG	1 cut(s)	717
MspR9I	CCNGG	2 cut(s)	703, 717
MunI	CAATTG	2 cut(s)	147, 654
MvaI	CCWGG	1 cut(s)	703
NarI	GGCGCC	1 cut(s)	467
NciI	CCSGG	1 cut(s)	717
NlaIII	CATG	3 cut(s)	49, 601, 675
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	675
PagI	TCATGA	1 cut(s)	597
PciI	ACATGT	1 cut(s)	671
PkrI	GCNGC	2 cut(s)	97, 100
PleI	GAGTC	1 cut(s)	485
PluTI	GGCGCC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	485
PscI	ACATGT	1 cut(s)	671
Psp6I	CCWGG	1 cut(s)	701
PspEI	GGTNACC	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	701
PspN4I	GGNNCC	1 cut(s)	468
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
RseI	CAYNNNNRTG	4 cut(s)	24, 44, 68, 670
SaqAI	TTAA	4 cut(s)	104, 228, 710, 770
SatI	GCNGC	2 cut(s)	96, 99
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	2 cut(s)	703, 717
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	1 cut(s)	72
SfoI	GGCGCC	1 cut(s)	468
SmiMI	CAYNNNNRTG	4 cut(s)	24, 44, 68, 670
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SpeI	ACTAGT	1 cut(s)	445
Sse9I	AATT	4 cut(s)	147, 382, 475, 654
SspDI	GGCGCC	1 cut(s)	466
SspMI	CTAG	3 cut(s)	425, 446, 620
StyD4I	CCNGG	2 cut(s)	701, 715
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	296
TasI	AATT	4 cut(s)	147, 382, 475, 654
Tru1I	TTAA	4 cut(s)	104, 228, 710, 770
Tru9I	TTAA	4 cut(s)	104, 228, 710, 770
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	2 cut(s)	95, 98
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	3 cut(s)	169, 337, 614
Vha464I	CTTAAG	1 cut(s)	103
XceI	RCATGY	1 cut(s)	675
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	2 cut(s)	135, 721
XspI	CTAG	3 cut(s)	425, 446, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.