Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

85613322 .. 85615259

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG634600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAATGGATGTCTGGTCACAAGGATGTTCTGCCGTTCACCGCCATGATTATCGTGGAGTGCATCAACGTGGGGTCAGGCATCTTCTTCAAGGCAGCTGCCTCAAGAGGGTTGAGCTACTATGTTCTCATTGTGTACTCTTATGCAATTGCCACCATTCTCCTCCTCCCTCTGCTTTTCATCTTTCGCAGAACAGGGCTTCCACCATTCAAGCTCTCTCTCATATTTAAACTCTTCCTCCTTGGGATAATCGGGTTTTCGGGTAGTTTATGTGTATATAAAGGTATAGAATACAGTTCACCAACTCTTGCTTCAGCTATTGGTAACCTTTCCCCAGCTTTTATCTTCATACTTGCTGTAACCTTCAGTATGGAAAGACTAAATTGGAGAAGCAGAAGCACACGAGCCAAAGTGATGGGTACTCTAGTATCAATATCAGGCGCACTGGTAGTGGTGCTCTATAAGGGCCCAACAATTCTATCACCTACGACTCCATCCATTCTCGGAATGTCAGAAAAGGAGTGGGTAAAAGGTGGCCTATTACTTACTCTTGGATACCTTCTCTTCTCTATGTGGGCTATCCTTCAGACCCATATCATGAAGACATACCCAGATGAGCTAGTTCTGGCCTTCTTATACAACTTGTGTGGGACAATTGTATCAGCACCAACATGTTTGATAGCAGAGAAAAACTTGATTGCCTGGAGATTAACGCCCGGTATACCATTGCTTGCCACTATATACTCGGGGTCCTTTGCTTTATCCTTTGGCATCCTTGTTCACATATGGGGCATGCACATGAAGGGTCCTGTGTATGTAGCAAGCTTCAAGCCATTATCAATTGTTATTGCTGCTGCTTCGAGTTTCATATTCCTTGGTGATGCTCTCTATCTCGGCAGTGTTGTTGGAGCTATAGTACTCTCCATAGGATTTTATGCTGTTATATGGGGAAAGGCAAAAGAAGAAAAAATGAATGAAGACTGTGTCTTACCAATAGGTAAGACACCTTTGTTGGTAGGCTACAAATCGATTGAAAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

347

Amino Acids

37.83

Weight (kDa)

9.31

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	18 - 152	5e-12	EamA-like transporter family
EamA	PF00892	177 - 315	1e-05	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	721
AciI	CCGC	1 cut(s)	42
AcuI	CTGAAG	3 cut(s)	297, 349, 569
AfaI	GTAC	3 cut(s)	137, 421, 918
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	4 cut(s)	91, 211, 829, 1034
AjnI	CCWGG	1 cut(s)	701
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AloI	GAACNNNNNNTCC	2 cut(s)	184, 216
AluBI	AGCT	8 cut(s)	98, 117, 214, 317, 338, 619, 825, 911
AluI	AGCT	8 cut(s)	98, 117, 214, 317, 338, 619, 825, 911
Alw21I	GWGCWC	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	745
AoxI	GGCC	3 cut(s)	466, 535, 627
ApaI	GGGCCC	1 cut(s)	470
ApeKI	GCWGC	4 cut(s)	95, 98, 851, 854
AspLEI	GCGC	1 cut(s)	443
AspS9I	GGNCC	4 cut(s)	466, 467, 750, 806
AsuC2I	CCSGG	1 cut(s)	717
AsuHPI	GGTGA	4 cut(s)	31, 291, 474, 890
AvaI	CYCGRG	1 cut(s)	745
AvaII	GGWCC	2 cut(s)	750, 806
BaeGI	GKGCMC	1 cut(s)	470
BaeI	ACNNNNGTAYC	6 cut(s)	411, 411, 444, 444, 642, 675
BanII	GRGCYC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	2 cut(s)	608, 984
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	4 cut(s)	85, 107, 838, 841
BccI	CCATC	2 cut(s)	409, 502
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	703
BciVI	GTATCC	1 cut(s)	548
BcnI	CCSGG	1 cut(s)	717
BfaI	CTAG	2 cut(s)	425, 620
BfmI	CTRYAG	1 cut(s)	912
BfuI	GTATCC	1 cut(s)	548
BisI	GCNGC	4 cut(s)	96, 99, 852, 855
BlsI	GCNGC	4 cut(s)	97, 100, 853, 856
BmcAI	AGTACT	1 cut(s)	918
Bme1390I	CCNGG	2 cut(s)	703, 717
Bme18I	GGWCC	2 cut(s)	750, 806
BmeT110I	CYCGRG	1 cut(s)	745
BmgT120I	GGNCC	4 cut(s)	466, 467, 750, 806
BmiI	GGNNCC	3 cut(s)	468, 751, 807
BmrFI	CCNGG	2 cut(s)	703, 717
BmsI	GCATC	4 cut(s)	72, 90, 780, 871
BpiI	GAAGAC	2 cut(s)	608, 984
BpmI	CTGGAG	1 cut(s)	724
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	717
Bsa29I	ATCGAT	1 cut(s)	1028
BsaJI	CCNNGG	2 cut(s)	241, 874
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 252, 900, 930
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	450
Bse3DI	GCAATG	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	703
BseCI	ATCGAT	1 cut(s)	1028
BseDI	CCNNGG	2 cut(s)	241, 874
BseGI	GGATG	4 cut(s)	15, 31, 494, 771
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	725
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	2 cut(s)	152, 155
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	4 cut(s)	85, 107, 838, 841
BseYI	CCCAGC	1 cut(s)	334
BshFI	GGCC	3 cut(s)	468, 537, 629
BshVI	ATCGAT	1 cut(s)	1028
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	745
BsiSI	CCGG	1 cut(s)	717
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	664
BsnI	GGCC	3 cut(s)	468, 537, 629
BsoBI	CYCGRG	1 cut(s)	745
Bsp120I	GGGCCC	1 cut(s)	466
Bsp1286I	GDGCHC	2 cut(s)	459, 470
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	3 cut(s)	468, 537, 629
BspDI	ATCGAT	1 cut(s)	1028
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	3 cut(s)	468, 751, 807
BsrDI	GCAATG	1 cut(s)	725
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	2 cut(s)	241, 874
BssNAI	GTATAC	1 cut(s)	722
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	241, 874
Bst1107I	GTATAC	1 cut(s)	722
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	703
Bst4CI	ACNGT	2 cut(s)	296, 983
Bst6I	CTCTTC	2 cut(s)	239, 569
BstC8I	GCNNGC	3 cut(s)	732, 794, 823
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	4 cut(s)	15, 31, 494, 771
BstHHI	GCGC	1 cut(s)	443
BstNI	CCWGG	1 cut(s)	703
BstNSI	RCATGY	2 cut(s)	675, 796
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	701, 715
BstSFI	CTRYAG	1 cut(s)	912
BstSLI	GKGCMC	1 cut(s)	470
BstV1I	GCAGC	4 cut(s)	85, 107, 838, 841
BstV2I	GAAGAC	2 cut(s)	608, 984
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstZ17I	GTATAC	1 cut(s)	722
Bsu15I	ATCGAT	1 cut(s)	1028
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	3 cut(s)	468, 537, 629
BsuTUI	ATCGAT	1 cut(s)	1028
BtsCI	GGATG	4 cut(s)	15, 31, 494, 771
BtsI	GCAGTG	1 cut(s)	904
BtsIMutI	CAGTG	2 cut(s)	443, 904
Cac8I	GCNNGC	3 cut(s)	732, 794, 823
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	1 cut(s)	443
Cfr13I	GGNCC	4 cut(s)	466, 467, 750, 806
ClaI	ATCGAT	1 cut(s)	1028
Csp6I	GTAC	3 cut(s)	136, 420, 917
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	5 cut(s)	46, 598, 672, 793, 799
CviQI	GTAC	3 cut(s)	136, 420, 917
DraI	TTTAAA	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	239, 569
EarI	CTCTTC	2 cut(s)	239, 569
Eco130I	CCWWGG	2 cut(s)	241, 874
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	750, 806
Eco57I	CTGAAG	3 cut(s)	297, 349, 569
Eco88I	CYCGRG	1 cut(s)	745
Eco91I	GGTNACC	1 cut(s)	323
EcoO109I	RGGNCCY	3 cut(s)	466, 750, 806
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	701
EcoT14I	CCWWGG	2 cut(s)	241, 874
EcoT38I	GRGCYC	1 cut(s)	470
ErhI	CCWWGG	2 cut(s)	241, 874
FaeI	CATG	5 cut(s)	49, 601, 675, 796, 802
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	5 cut(s)	45, 597, 671, 792, 798
FauNDI	CATATG	1 cut(s)	785
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	4 cut(s)	96, 99, 852, 855
FokI	GGATG	4 cut(s)	22, 38, 481, 758
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	4 cut(s)	96, 99, 852, 855
FspBI	CTAG	2 cut(s)	425, 620
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	4 cut(s)	96, 99, 852, 855
GsaI	CCCAGC	1 cut(s)	338
GsuI	CTGGAG	1 cut(s)	724
HaeIII	GGCC	3 cut(s)	468, 537, 629
HapII	CCGG	1 cut(s)	717
HhaI	GCGC	1 cut(s)	443
Hin1II	CATG	5 cut(s)	49, 601, 675, 796, 802
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	823
HinfI	GANTC	1 cut(s)	490
HpaII	CCGG	1 cut(s)	717
HphI	GGTGA	4 cut(s)	31, 291, 474, 890
Hpy166II	GTNNAC	5 cut(s)	39, 136, 299, 722, 781
Hpy188I	TCNGA	3 cut(s)	506, 514, 588
Hpy188III	TCNNGA	2 cut(s)	105, 598
Hpy8I	GTNNAC	5 cut(s)	39, 136, 299, 722, 781
HpyAV	CCTTC	5 cut(s)	373, 569, 593, 640, 796
HpyCH4III	ACNGT	2 cut(s)	296, 983
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	3 cut(s)	63, 146, 796
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	49, 601, 675, 796, 802
HspAI	GCGC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	908
Lsp1109I	GCAGC	4 cut(s)	85, 107, 838, 841
LweI	GCATC	4 cut(s)	72, 90, 780, 871
MaeI	CTAG	2 cut(s)	425, 620
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	3 cut(s)	17, 323, 358
MboII	GAAGA	8 cut(s)	76, 79, 226, 337, 556, 613, 974, 989
MfeI	CAATTG	3 cut(s)	147, 654, 840
MhlI	GDGCHC	2 cut(s)	459, 470
MluCI	AATT	5 cut(s)	147, 382, 474, 654, 840
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	886
MnlI	CCTC	6 cut(s)	101, 112, 173, 176, 180, 248
MseI	TTAA	2 cut(s)	228, 710
MslI	CAYNNNNRTG	5 cut(s)	24, 44, 68, 670, 797
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	717
MspR9I	CCNGG	2 cut(s)	703, 717
MunI	CAATTG	3 cut(s)	147, 654, 840
MvaI	CCWGG	1 cut(s)	703
NciI	CCSGG	1 cut(s)	717
NdeI	CATATG	1 cut(s)	785
NlaIII	CATG	5 cut(s)	49, 601, 675, 796, 802
NlaIV	GGNNCC	3 cut(s)	468, 751, 807
NmeAIII	GCCGAG	1 cut(s)	873
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	2 cut(s)	675, 796
PaeI	GCATGC	1 cut(s)	796
PagI	TCATGA	1 cut(s)	597
PciI	ACATGT	1 cut(s)	671
PflFI	GACNNNGTC	1 cut(s)	983
PkrI	GCNGC	4 cut(s)	97, 100, 853, 856
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PpuMI	RGGWCCY	2 cut(s)	750, 806
PscI	ACATGT	1 cut(s)	671
Psp5II	RGGWCCY	2 cut(s)	750, 806
Psp6I	CCWGG	1 cut(s)	701
PspEI	GGTNACC	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	701
PspN4I	GGNNCC	3 cut(s)	468, 751, 807
PspOMI	GGGCCC	1 cut(s)	466
PspPI	GGNCC	4 cut(s)	466, 467, 750, 806
PspPPI	RGGWCCY	2 cut(s)	750, 806
PsyI	GACNNNGTC	1 cut(s)	983
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	3 cut(s)	137, 421, 918
RsaNI	GTAC	3 cut(s)	136, 420, 917
RseI	CAYNNNNRTG	5 cut(s)	24, 44, 68, 670, 797
SaqAI	TTAA	2 cut(s)	228, 710
SatI	GCNGC	4 cut(s)	96, 99, 852, 855
Sau96I	GGNCC	4 cut(s)	466, 467, 750, 806
ScaI	AGTACT	1 cut(s)	918
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	2 cut(s)	703, 717
SduI	GDGCHC	2 cut(s)	459, 470
SfaNI	GCATC	4 cut(s)	72, 90, 780, 871
SfcI	CTRYAG	1 cut(s)	912
SinI	GGWCC	2 cut(s)	750, 806
SmiMI	CAYNNNNRTG	5 cut(s)	24, 44, 68, 670, 797
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SphI	GCATGC	1 cut(s)	796
Sse9I	AATT	5 cut(s)	147, 382, 474, 654, 840
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	2 cut(s)	425, 620
StyD4I	CCNGG	2 cut(s)	701, 715
StyI	CCWWGG	2 cut(s)	241, 874
TaaI	ACNGT	2 cut(s)	296, 983
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	860, 1028
TasI	AATT	5 cut(s)	147, 382, 474, 654, 840
TatI	WGTACW	2 cut(s)	135, 916
Tru1I	TTAA	2 cut(s)	228, 710
Tru9I	TTAA	2 cut(s)	228, 710
TscAI	CASTG	2 cut(s)	450, 904
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	4 cut(s)	95, 98, 851, 854
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	7 cut(s)	169, 337, 614, 815, 856, 986, 990
TspRI	CASTG	2 cut(s)	450, 904
Tth111I	GACNNNGTC	1 cut(s)	983
VpaK11BI	GGWCC	2 cut(s)	750, 806
XceI	RCATGY	2 cut(s)	675, 796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	721
XspI	CTAG	2 cut(s)	425, 620
ZrmI	AGTACT	1 cut(s)	918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.