Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

67793042 .. 67793878

Gene Structure 837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0550800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCATTGGCGAGCTGCAAACAATCTCTTGCCAACAAGAGCCTGTCTAACAACAAAGGGATACACAGGTGATACCAGCGGCGTCCTTTGTAGTCAGAGGTTAGAAGATGTATCTCATATACTGTGCAAATGCCTTATTTCAGTTGAGCTCCTATCTTCCCCTCTTCTTAATCTCCAGCAACCCTTGCTACCTTCTATAAACTTCAAAGAATGGCTATTGGATTGTGCATTGAATCTGAATCTTGCTACCTTTGAAAAGTTGATGATGGTCTTATGGTCTGTGTGGAAGAATCGAAACAGTAAACTCTGGGATGTTGTGGCTCAAACAGCACCTAATATTCTTCTATACTCCATGGCTTGGTTGGAAGAGTTCCACAAAGCTCGTGATGTGCACAATAACACAGAGCTCTTAGCCATTAGGGAGGGTCTTGATATAGTTCGATCACTAAATCTGCAGAATGTCACTTTAGAAAGTGACTGTTTGGAAGCAGTACAATTGATCACTCGTGAGGACCACGACTGTGATGAGCAAAGAGCTGTGTTGGATGACATTGCTGTCTTTATGACTGCACTTCCAGGTGTAGAGATTAAGCATGCCTCTCGTACTTGTAACAATGTGGCACATAGATTAGCTGCTATTGCTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

216

Amino Acids

24.43

Weight (kDa)

5.49

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	2 - 48	8.1e-06	zinc-binding in reverse transcriptase
RVT_3	PF13456	132 - 212	7.1e-14	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AccB7I	CCANNNNNTGG	1 cut(s)	357
AciI	CCGC	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	2 cut(s)	492, 604
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	4 cut(s)	205, 232, 254, 647
AjnI	CCWGG	1 cut(s)	574
AleI	CACNNNNGTG	1 cut(s)	519
AluBI	AGCT	6 cut(s)	14, 148, 380, 406, 536, 632
AluI	AGCT	6 cut(s)	14, 148, 380, 406, 536, 632
Alw21I	GWGCWC	3 cut(s)	150, 393, 408
Alw44I	GTGCAC	1 cut(s)	389
ApaLI	GTGCAC	1 cut(s)	389
ApeKI	GCWGC	2 cut(s)	14, 632
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	511
BaeGI	GKGCMC	1 cut(s)	393
BaeI	ACNNNNGTAYC	2 cut(s)	52, 85
BanII	GRGCYC	2 cut(s)	150, 408
BauI	CACGAG	2 cut(s)	381, 504
Bbv12I	GWGCWC	3 cut(s)	150, 393, 408
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	1 cut(s)	576
BciVI	GTATCC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	3 cut(s)	15, 79, 633
BlsI	GCNGC	3 cut(s)	16, 80, 634
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	576
BpmI	CTGGAG	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	316, 550
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	549
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	619
BsgI	GTGCAG	1 cut(s)	552
BsiHKAI	GWGCWC	3 cut(s)	150, 393, 408
BslI	CCNNNNNNNGG	1 cut(s)	357
Bsp1286I	GDGCHC	3 cut(s)	150, 393, 408
Bsp143I	GATC	2 cut(s)	440, 498
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	456
BsrDI	GCAATG	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	2 cut(s)	440, 498
BssNI	GRCGYC	1 cut(s)	81
BssSI	CACGAG	2 cut(s)	381, 504
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	2 cut(s)	381, 504
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	4 cut(s)	123, 299, 479, 521
Bst6I	CTCTTC	2 cut(s)	168, 360
BstACI	GRCGYC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	12, 594
BstDEI	CTNAG	1 cut(s)	409
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	316, 550
BstKTI	GATC	2 cut(s)	443, 501
BstMBI	GATC	2 cut(s)	440, 498
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 326, 638
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	1 cut(s)	452
BstSLI	GKGCMC	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	619
BsuI	GTATCC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	316, 550
Cac8I	GCNNGC	2 cut(s)	12, 594
Cfr13I	GGNCC	1 cut(s)	511
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	491, 603
CviAII	CATG	2 cut(s)	352, 593
CviQI	GTAC	2 cut(s)	491, 603
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	2 cut(s)	442, 500
DpnII	GATC	2 cut(s)	440, 498
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
Eam1104I	CTCTTC	2 cut(s)	168, 360
EarI	CTCTTC	2 cut(s)	168, 360
Ecl136II	GAGCTC	2 cut(s)	148, 406
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	2 cut(s)	150, 408
Eco47I	GGWCC	1 cut(s)	511
Eco53kI	GAGCTC	2 cut(s)	148, 406
EcoICRI	GAGCTC	2 cut(s)	148, 406
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	351
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	150, 408
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	2 cut(s)	355, 596
FatI	CATG	2 cut(s)	351, 592
FbaI	TGATCA	1 cut(s)	498
Fnu4HI	GCNGC	3 cut(s)	15, 79, 633
FokI	GGATG	2 cut(s)	323, 557
FriOI	GRGCYC	2 cut(s)	150, 408
Fsp4HI	GCNGC	3 cut(s)	15, 79, 633
GluI	GCNGC	3 cut(s)	15, 79, 633
GsuI	CTGGAG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	355, 596
HinfI	GANTC	3 cut(s)	232, 238, 289
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	302, 391
Hpy188I	TCNGA	2 cut(s)	96, 237
Hpy188III	TCNNGA	3 cut(s)	383, 428, 506
Hpy8I	GTNNAC	2 cut(s)	302, 391
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	4 cut(s)	123, 299, 479, 521
HpyCH4V	TGCA	7 cut(s)	4, 17, 126, 227, 391, 454, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 326, 638
HpyF3I	CTNAG	1 cut(s)	409
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	355, 596
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	2 cut(s)	440, 498
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	7 cut(s)	51, 55, 88, 188, 292, 561, 588
Lsp1109I	GCAGC	1 cut(s)	619
MaeIII	GTNAC	3 cut(s)	460, 473, 608
MalI	GATC	2 cut(s)	442, 500
MboI	GATC	2 cut(s)	440, 498
MboII	GAAGA	6 cut(s)	116, 147, 155, 298, 332, 377
MfeI	CAATTG	1 cut(s)	494
MhlI	GDGCHC	3 cut(s)	150, 393, 408
MluCI	AATT	1 cut(s)	494
MmeI	TCCRAC	2 cut(s)	342, 522
MnlI	CCTC	5 cut(s)	90, 171, 415, 502, 607
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	168, 588
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	576
MunI	CAATTG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	3 cut(s)	184, 326, 638
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	2 cut(s)	440, 498
NlaIII	CATG	2 cut(s)	355, 596
NmuCI	GTSAC	2 cut(s)	460, 473
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	596
OliI	CACNNNNGTG	1 cut(s)	519
PaeI	GCATGC	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	232, 238, 289
PflMI	CCANNNNNTGG	1 cut(s)	357
PkrI	GCNGC	3 cut(s)	16, 80, 634
Psp124BI	GAGCTC	2 cut(s)	150, 408
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	456
RsaI	GTAC	2 cut(s)	492, 604
RsaNI	GTAC	2 cut(s)	491, 603
RseI	CAYNNNNRTG	1 cut(s)	519
SacI	GAGCTC	2 cut(s)	150, 408
SaqAI	TTAA	2 cut(s)	168, 588
SatI	GCNGC	3 cut(s)	15, 79, 633
Sau3AI	GATC	2 cut(s)	440, 498
Sau96I	GGNCC	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	3 cut(s)	150, 393, 408
SfcI	CTRYAG	1 cut(s)	452
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	519
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	1 cut(s)	494
SsiI	CCGC	1 cut(s)	78
SspI	AATATT	1 cut(s)	337
SstI	GAGCTC	2 cut(s)	150, 408
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	4 cut(s)	123, 299, 479, 521
TaqI	TCGA	2 cut(s)	292, 439
TasI	AATT	1 cut(s)	494
TatI	WGTACW	1 cut(s)	490
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	3 cut(s)	232, 238, 289
Tru1I	TTAA	2 cut(s)	168, 588
Tru9I	TTAA	2 cut(s)	168, 588
TseFI	GTSAC	2 cut(s)	460, 473
TseI	GCWGC	2 cut(s)	14, 632
Tsp45I	GTSAC	2 cut(s)	460, 473
Van91I	CCANNNNNTGG	1 cut(s)	357
VneI	GTGCAC	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	511
XceI	RCATGY	1 cut(s)	596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.