Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

79707467 .. 79709142

Gene Structure 1676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021978

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCATGGAGGTATGCTCAGAAGGATGTAATTCTGCCATTCACCGCCATGGTTACAATGAAGTGCATCTATGTTGGGTTGAACATCTTCTTTAAAGCAGCCACCTCAAGAGGGTTAAGCTACTATGTCTTCATTGTCTACTCTTATGCAGTTGCTACTCTTCTTCTCCTTCCTCTACCTTTCATCTTTCGCAGAACAGGGCTTCCTCCATTCAAGCTCTCACTCCTCTTTGAACTTTTCCTCCTTGGACTGACAAGGATGGAAAGGCTAAGTTTCAGAAGCAGCAGCAGTCAAGCCAAAGTCATGGGCACTTTAGTATCAATATCAGGTGCAATGGTAGTGGTTCTCTATAAGGGACCAACTATTCTATCCACTACGGCAGAAAAGAATTGGGTAAAAGGTGGCCTATTAGTCGCTGTTGGGTTCCTTATGTTCTCAACCTGGTCTATCCTTCAGAAACATATCATGAAGACAACGTGCACAGATGAGCTAGTCCTTGCCTTCTTAAACAACCTGTGTGGGACAATCATATCAGCACCTGTATGTTTCTTAGAAGAAAAAGAGTTGGGTGCCTGGATGGTGAGGCCTGGTATACCGTTGCTTGCCATTTTATACTCGGGAGCCTTTGGTTCATCCCTCAACATTCTAGTTCACATGTGGGGCGTGAACGTCAAGGGTCCTGTCTATGTATCGAGCTTCAAGCCATTGTCAATTGCCATTGCTGCAGCCTCTGGTGTCATTTTCCTTGGTGATGATCTCCATCTTGGCATTGTTGTTGGAGCTGTAATGCTATCCATAGGGTTGTTTGCAGTACTATGGGGAAAGGCGAAGGAAGAAGAAGAAATGAGTGAAGACTCTGGCTTTGGTAGCTTGAGAGGGTTACCTATTTGTAAGAAACCTCTGTTGGAAAGCTACAAAGTTGAAAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

311

Amino Acids

33.97

Weight (kDa)

9.21

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	133 - 272	3.9e-10	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	569
AccI	GTMKAC	2 cut(s)	138, 592
AciI	CCGC	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	813
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflIII	ACRYGT	2 cut(s)	654, 927
AgsI	TTSAA	5 cut(s)	82, 214, 233, 700, 923
AjnI	CCWGG	3 cut(s)	440, 572, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	887, 919
AloI	GAACNNNNNNTCC	4 cut(s)	187, 219, 225, 257
AluBI	AGCT	7 cut(s)	120, 217, 490, 696, 782, 870, 912
AluI	AGCT	7 cut(s)	120, 217, 490, 696, 782, 870, 912
Alw21I	GWGCWC	1 cut(s)	482
Alw44I	GTGCAC	1 cut(s)	478
AlwNI	CAGNNNCTG	2 cut(s)	539, 731
Ama87I	CYCGRG	1 cut(s)	616
AoxI	GGCC	2 cut(s)	403, 584
ApaLI	GTGCAC	1 cut(s)	478
ApeKI	GCWGC	5 cut(s)	98, 282, 285, 722, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	845, 877
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	356, 677
AsuHPI	GGTGA	3 cut(s)	34, 592, 761
AvaI	CYCGRG	1 cut(s)	616
AvaII	GGWCC	2 cut(s)	356, 677
BaeGI	GKGCMC	2 cut(s)	311, 482
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BanI	GGYRCC	1 cut(s)	569
BbsI	GAAGAC	3 cut(s)	121, 476, 858
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	5 cut(s)	110, 294, 297, 709, 737
BccI	CCATC	3 cut(s)	253, 571, 768
BceAI	ACGGC	1 cut(s)	393
BciT130I	CCWGG	3 cut(s)	442, 574, 588
BfaI	CTAG	2 cut(s)	491, 647
BfmI	CTRYAG	1 cut(s)	723
BisI	GCNGC	5 cut(s)	99, 283, 286, 723, 726
BlsI	GCNGC	5 cut(s)	100, 284, 287, 724, 727
BmcAI	AGTACT	1 cut(s)	813
Bme1390I	CCNGG	3 cut(s)	442, 574, 588
Bme18I	GGWCC	2 cut(s)	356, 677
BmeT110I	CYCGRG	1 cut(s)	616
BmgT120I	GGNCC	2 cut(s)	356, 677
BmiI	GGNNCC	5 cut(s)	357, 425, 571, 622, 678
BmrFI	CCNGG	3 cut(s)	442, 574, 588
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	3 cut(s)	121, 476, 858
BplI	GAGNNNNNCTC	1 cut(s)	33
BpuEI	CTTGAG	2 cut(s)	91, 892
BsaBI	GATNNNNATC	1 cut(s)	759
BsaJI	CCNNGG	3 cut(s)	48, 244, 745
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse3DI	GCAATG	2 cut(s)	339, 717
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	3 cut(s)	442, 574, 588
BseDI	CCNNGG	3 cut(s)	48, 244, 745
BseGI	GGATG	4 cut(s)	31, 264, 582, 632
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	2 cut(s)	339, 717
BseMII	CTCAG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	2 cut(s)	311, 482
BseXI	GCAGC	5 cut(s)	110, 294, 297, 709, 737
BshFI	GGCC	2 cut(s)	405, 586
BshNI	GGYRCC	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	482
BsiHKCI	CYCGRG	1 cut(s)	616
BslFI	GGGAC	2 cut(s)	369, 535
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	369, 535
BsnI	GGCC	2 cut(s)	405, 586
BsoBI	CYCGRG	1 cut(s)	616
Bsp1286I	GDGCHC	2 cut(s)	311, 482
Bsp143I	GATC	1 cut(s)	754
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	2 cut(s)	405, 586
BspCNI	CTCAG	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	5 cut(s)	357, 425, 571, 622, 678
BspMAI	CTGCAG	1 cut(s)	727
BspT107I	GGYRCC	1 cut(s)	569
BsrDI	GCAATG	2 cut(s)	339, 717
BssECI	CCNNGG	3 cut(s)	48, 244, 745
BssMI	GATC	1 cut(s)	754
BssNAI	GTATAC	1 cut(s)	593
BssT1I	CCWWGG	3 cut(s)	48, 244, 745
Bst1107I	GTATAC	1 cut(s)	593
Bst2UI	CCWGG	3 cut(s)	442, 574, 588
Bst4CI	ACNGT	1 cut(s)	597
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	3 cut(s)	18, 269, 550
BstDSI	CCRYGG	1 cut(s)	48
BstEII	GGTNACC	1 cut(s)	879
BstF5I	GGATG	4 cut(s)	31, 264, 582, 632
BstKTI	GATC	1 cut(s)	757
BstMBI	GATC	1 cut(s)	754
BstMWI	GCNNNNNNNGC	2 cut(s)	722, 867
BstNI	CCWGG	3 cut(s)	442, 574, 588
BstNSI	RCATGY	2 cut(s)	658, 931
BstPI	GGTNACC	1 cut(s)	879
BstSCI	CCNGG	3 cut(s)	440, 572, 586
BstSFI	CTRYAG	1 cut(s)	723
BstSLI	GKGCMC	2 cut(s)	311, 482
BstV1I	GCAGC	5 cut(s)	110, 294, 297, 709, 737
BstV2I	GAAGAC	3 cut(s)	121, 476, 858
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstZ17I	GTATAC	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	405, 586
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	4 cut(s)	31, 264, 582, 632
Cac8I	GCNNGC	1 cut(s)	603
CaiI	CAGNNNCTG	2 cut(s)	539, 731
CciI	TCATGA	1 cut(s)	465
Cfr13I	GGNCC	2 cut(s)	356, 677
CsiI	ACCWGGT	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	812
CspCI	CAANNNNNGTGG	4 cut(s)	321, 356, 499, 534
CviAII	CATG	6 cut(s)	6, 49, 304, 466, 655, 928
CviQI	GTAC	1 cut(s)	812
DdeI	CTNAG	3 cut(s)	18, 269, 550
DpnI	GATC	1 cut(s)	756
DpnII	GATC	1 cut(s)	754
DraI	TTTAAA	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	3 cut(s)	48, 244, 745
Eco147I	AGGCCT	1 cut(s)	586
Eco47I	GGWCC	2 cut(s)	356, 677
Eco57I	CTGAAG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	616
Eco91I	GGTNACC	1 cut(s)	879
EcoO109I	RGGNCCY	1 cut(s)	677
EcoO65I	GGTNACC	1 cut(s)	879
EcoRII	CCWGG	3 cut(s)	440, 572, 586
EcoT14I	CCWWGG	3 cut(s)	48, 244, 745
ErhI	CCWWGG	3 cut(s)	48, 244, 745
FaeI	CATG	6 cut(s)	9, 52, 307, 469, 658, 931
FaqI	GGGAC	2 cut(s)	369, 535
FatI	CATG	6 cut(s)	5, 48, 303, 465, 654, 927
FblI	GTMKAC	2 cut(s)	138, 592
Fnu4HI	GCNGC	5 cut(s)	99, 283, 286, 723, 726
FokI	GGATG	4 cut(s)	38, 271, 589, 619
Fsp4HI	GCNGC	5 cut(s)	99, 283, 286, 723, 726
FspBI	CTAG	2 cut(s)	491, 647
GluI	GCNGC	5 cut(s)	99, 283, 286, 723, 726
HaeIII	GGCC	2 cut(s)	405, 586
Hin1II	CATG	6 cut(s)	9, 52, 307, 469, 658, 931
HinfI	GANTC	1 cut(s)	854
HphI	GGTGA	3 cut(s)	34, 592, 761
Hpy166II	GTNNAC	5 cut(s)	139, 480, 593, 652, 667
Hpy188I	TCNGA	3 cut(s)	21, 278, 456
Hpy188III	TCNNGA	3 cut(s)	108, 466, 618
Hpy8I	GTNNAC	5 cut(s)	139, 480, 593, 652, 667
HpyAV	CCTTC	5 cut(s)	16, 179, 461, 511, 823
HpyCH4III	ACNGT	1 cut(s)	597
HpyCH4IV	ACGT	2 cut(s)	476, 669
HpyCH4V	TGCA	6 cut(s)	66, 149, 332, 480, 725, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	722, 867
HpyF3I	CTNAG	3 cut(s)	18, 269, 550
HpySE526I	ACGT	2 cut(s)	476, 669
Hsp92II	CATG	6 cut(s)	9, 52, 307, 469, 658, 931
Kzo9I	GATC	1 cut(s)	754
LmnI	GCTCC	2 cut(s)	620, 779
Lsp1109I	GCAGC	5 cut(s)	110, 294, 297, 709, 737
LweI	GCATC	1 cut(s)	75
MabI	ACCWGGT	1 cut(s)	440
MaeI	CTAG	2 cut(s)	491, 647
MaeII	ACGT	2 cut(s)	476, 669
MaeIII	GTNAC	2 cut(s)	52, 879
MalI	GATC	1 cut(s)	756
MboI	GATC	1 cut(s)	754
MfeI	CAATTG	1 cut(s)	711
MhlI	GDGCHC	2 cut(s)	311, 482
MluCI	AATT	3 cut(s)	30, 388, 711
MlyI	GAGTC	1 cut(s)	848
MmeI	TCCRAC	2 cut(s)	757, 885
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	3 cut(s)	93, 116, 506
MslI	CAYNNNNRTG	2 cut(s)	47, 541
MspR9I	CCNGG	3 cut(s)	442, 574, 588
MunI	CAATTG	1 cut(s)	711
MvaI	CCWGG	3 cut(s)	442, 574, 588
MwoI	GCNNNNNNNGC	2 cut(s)	722, 867
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	754
NlaIII	CATG	6 cut(s)	9, 52, 307, 469, 658, 931
NlaIV	GGNNCC	5 cut(s)	357, 425, 571, 622, 678
NspI	RCATGY	2 cut(s)	658, 931
PagI	TCATGA	1 cut(s)	465
PceI	AGGCCT	1 cut(s)	586
PciI	ACATGT	2 cut(s)	654, 927
PdmI	GAANNNNTTC	1 cut(s)	86
PkrI	GCNGC	5 cut(s)	100, 284, 287, 724, 727
PleI	GAGTC	1 cut(s)	848
PpsI	GAGTC	1 cut(s)	848
PpuMI	RGGWCCY	1 cut(s)	677
PscI	ACATGT	2 cut(s)	654, 927
Psp5II	RGGWCCY	1 cut(s)	677
Psp6I	CCWGG	3 cut(s)	440, 572, 586
PspEI	GGTNACC	1 cut(s)	879
PspGI	CCWGG	3 cut(s)	440, 572, 586
PspN4I	GGNNCC	5 cut(s)	357, 425, 571, 622, 678
PspPI	GGNCC	2 cut(s)	356, 677
PspPPI	RGGWCCY	1 cut(s)	677
PstI	CTGCAG	1 cut(s)	727
PstNI	CAGNNNCTG	2 cut(s)	539, 731
RsaI	GTAC	1 cut(s)	813
RsaNI	GTAC	1 cut(s)	812
RseI	CAYNNNNRTG	2 cut(s)	47, 541
SaqAI	TTAA	3 cut(s)	93, 116, 506
SatI	GCNGC	5 cut(s)	99, 283, 286, 723, 726
Sau3AI	GATC	1 cut(s)	754
Sau96I	GGNCC	2 cut(s)	356, 677
ScaI	AGTACT	1 cut(s)	813
SchI	GAGTC	1 cut(s)	848
ScrFI	CCNGG	3 cut(s)	442, 574, 588
SduI	GDGCHC	2 cut(s)	311, 482
SexAI	ACCWGGT	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	723
SinI	GGWCC	2 cut(s)	356, 677
SmiMI	CAYNNNNRTG	2 cut(s)	47, 541
SmlI	CTYRAG	2 cut(s)	106, 871
SmoI	CTYRAG	2 cut(s)	106, 871
Sse9I	AATT	3 cut(s)	30, 388, 711
SseBI	AGGCCT	1 cut(s)	586
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	2 cut(s)	491, 647
StuI	AGGCCT	1 cut(s)	586
StyD4I	CCNGG	3 cut(s)	440, 572, 586
StyI	CCWWGG	3 cut(s)	48, 244, 745
TaaI	ACNGT	1 cut(s)	597
TaiI	ACGT	2 cut(s)	479, 672
TaqI	TCGA	1 cut(s)	692
TasI	AATT	3 cut(s)	30, 388, 711
TatI	WGTACW	1 cut(s)	811
Tru1I	TTAA	3 cut(s)	93, 116, 506
Tru9I	TTAA	3 cut(s)	93, 116, 506
TseI	GCWGC	5 cut(s)	98, 282, 285, 722, 725
TspDTI	ATGAA	5 cut(s)	74, 121, 172, 482, 621
VneI	GTGCAC	1 cut(s)	478
VpaK11BI	GGWCC	2 cut(s)	356, 677
XceI	RCATGY	2 cut(s)	658, 931
XmiI	GTMKAC	2 cut(s)	138, 592
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	2 cut(s)	491, 647
ZrmI	AGTACT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.