Rroxscaffold_2G00096620

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
17965330 .. 17975026
9697 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00096620.1

Sequence Viewer

Length: 366 bp
ATGGCAGGGAGGTCTTGTTACAGGGACGGGTTGCCCTTTGCAGCCATGATTACAGTGGAGAGCACCAACGTCGGCTTAAACATCTTATTCAAGTTAGCAACCTCAAAAGGGTTGAGTTTCTATGTATTCATTGTCTACTCCTATGCATTTGCCACTGTTCTTCTCCTCCCTCTTCCTTTCATTTTTCCCAGAACGAGGCTTCCTCCATTGAACTTCTCTCTTCTCTTTAAAGCTTTCCTCCTTGGACTGATCGGGTTTGTGGCAAATATATGTGCATATAAAGTTCACAGAAACAAGATTATAGAGATGTTGGAGATTGAGCATGGGATGAGATTGCCAAACTCCCCTAAAGGTTCCAGAAAGTGA

Protein Analysis

121

Amino Acids

13.59

Weight (kDa)

10.02

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 108, 195
AgsI TTSAA 2 cut(s) 91, 211
AloI GAACNNNNNNTCC 2 cut(s) 184, 216
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw21I GWGCWC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 53
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 355
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BsaJI CCNNGG 1 cut(s) 241
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 195
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 2 cut(s) 108, 195
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 65
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 108, 195
BsmFI GGGAC 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 241
Bst4CI ACNGT 2 cut(s) 55, 157
Bst6I CTCTTC 2 cut(s) 177, 225
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 333
BtsIMutI CAGTG 2 cut(s) 60, 153
CviAII CATG 2 cut(s) 46, 323
CviJI RGCY 4 cut(s) 44, 75, 199, 233
CviKI_1 RGCY 4 cut(s) 44, 75, 199, 233
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
DraI TTTAAA 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 177, 225
EarI CTCTTC 2 cut(s) 177, 225
Eco130I CCWWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 241
EcoT22I ATGCAT 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 2 cut(s) 49, 326
FaiI YATR 9 cut(s) 47, 123, 144, 269, 271, 277, 279, 302, 324
FaqI GGGAC 1 cut(s) 38
FatI CATG 2 cut(s) 45, 322
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
Hin1II CATG 2 cut(s) 49, 326
HindIII AAGCTT 1 cut(s) 231
Hpy166II GTNNAC 2 cut(s) 136, 286
Hpy188III TCNNGA 1 cut(s) 357
Hpy8I GTNNAC 2 cut(s) 136, 286
Hpy99I CGWCG 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 55, 157
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 41, 146, 275
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 2 cut(s) 49, 326
Kzo9I GATC 1 cut(s) 249
LpnPI CCDG 2 cut(s) 7, 202
Lsp1109I GCAGC 1 cut(s) 53
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 3 cut(s) 152, 164, 212
MhlI GDGCHC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 7 cut(s) 3, 112, 176, 180, 189, 213, 248
Mph1103I ATGCAT 1 cut(s) 148
MseI TTAA 2 cut(s) 77, 228
NdeII GATC 1 cut(s) 249
NlaIII CATG 2 cut(s) 49, 326
NlaIV GGNNCC 1 cut(s) 355
NsiI ATGCAT 1 cut(s) 148
PkrI GCNGC 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 355
SaqAI TTAA 2 cut(s) 77, 228
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 249
SduI GDGCHC 1 cut(s) 65
SetI ASST 5 cut(s) 14, 72, 104, 235, 355
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 55, 157
TaiI ACGT 1 cut(s) 72
Tru1I TTAA 2 cut(s) 77, 228
Tru9I TTAA 2 cut(s) 77, 228
TscAI CASTG 2 cut(s) 60, 160
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 118, 169
TspRI CASTG 2 cut(s) 60, 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.