Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Forward (+)

4064565 .. 4066432

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAATGGATGTGTGGTCACAAGGATGTTCTGCCGTTCACCGCCATGATTATCGTGGAGTGCATCAACGTGGGGTCAGGCGTCTTCTTCAAGGCAGCTGCCTCAAGAGGGTTGAGCTACTATGTTCTCATTGTCTACTCTTATGCAATTGTCACCATTCTCCTCCTCCCTCTGCCTTTCATCTTTCGCAGAACAGGGCTTCCACCATTCAAGCTCTCTCTCATATTTAAACTCTTCCTCCTTGGGATAATCGGGTTTTCGGGTAGTTTATGTGTATATAAAGGTATAGAATACAGCTCACCAACTCTTGCTTCAGCTATTGGTAACCTTTCCCCAGCTTTTATCTTCATACTTGCTGTAACCTTCAGTATGGAAAGACTAAATTGGAGAAGCAGAAGCACACGAGCCAAAGTGATGGGTACTCTAGTATCAATATCAGGCGCACTAGTAGTAGTGCTCTATAAGGGCCCAACAATTCTATCACCTACGACTCCATCCATTCTCGGAATGTCAGAAAAGGAGTGGGTAAAAGGTGGCCTATTACTTACTCTTGGATACCTTCTCTTCTCTATGTGGGCTATCCTTCAGGGGTCCTTTGTTTTATCCTTTGGCATCCTTGTTCACATATGGTTCATGCACATAAAGGGTCCTGTGTATGTAGCAAGCTTCAAGCCATTATCAATTGTTATTGCTGCTGCTTCGAGTTTCATATTCCTTGGTGATGCTCTCTATCTCGGCAGCGTTGTTGGAGCTATAGTACTCTCCATAGGATTTTATGCTGTTATATGGGGAAAAGGCAGAAGAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

270

Amino Acids

29.52

Weight (kDa)

9.94

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	22 - 152	2.9e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	1 cut(s)	42
AcuI	CTGAAG	3 cut(s)	297, 349, 569
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	2 cut(s)	421, 759
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	91, 211, 670
AhlI	ACTAGT	1 cut(s)	445
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AloI	GAACNNNNNNTCC	2 cut(s)	184, 216
AluBI	AGCT	8 cut(s)	98, 117, 214, 297, 317, 338, 666, 752
AluI	AGCT	8 cut(s)	98, 117, 214, 297, 317, 338, 666, 752
Alw21I	GWGCWC	1 cut(s)	459
AoxI	GGCC	2 cut(s)	466, 535
ApaI	GGGCCC	1 cut(s)	470
ApeKI	GCWGC	5 cut(s)	95, 98, 692, 695, 738
AspLEI	GCGC	1 cut(s)	443
AspS9I	GGNCC	4 cut(s)	466, 467, 591, 647
AsuHPI	GGTGA	5 cut(s)	31, 145, 291, 474, 731
AvaII	GGWCC	2 cut(s)	591, 647
BaeGI	GKGCMC	1 cut(s)	470
BaeI	ACNNNNGTAYC	4 cut(s)	411, 411, 444, 444
BanII	GRGCYC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	5 cut(s)	85, 107, 679, 682, 750
BccI	CCATC	2 cut(s)	409, 502
BceAI	ACGGC	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	548
BcuI	ACTAGT	1 cut(s)	445
BfaI	CTAG	2 cut(s)	425, 446
BfmI	CTRYAG	1 cut(s)	753
BfuI	GTATCC	1 cut(s)	548
BisI	GCNGC	5 cut(s)	96, 99, 693, 696, 739
BlsI	GCNGC	5 cut(s)	97, 100, 694, 697, 740
BmcAI	AGTACT	1 cut(s)	759
Bme18I	GGWCC	2 cut(s)	591, 647
BmgT120I	GGNCC	4 cut(s)	466, 467, 591, 647
BmiI	GGNNCC	3 cut(s)	468, 592, 648
BmsI	GCATC	3 cut(s)	72, 621, 712
BpiI	GAAGAC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	241, 715
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 252, 741, 771
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	241, 715
BseGI	GGATG	4 cut(s)	15, 31, 494, 612
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseRI	GAGGAG	2 cut(s)	152, 155
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	5 cut(s)	85, 107, 679, 682, 750
BseYI	CCCAGC	1 cut(s)	334
BshFI	GGCC	2 cut(s)	468, 537
BsiHKAI	GWGCWC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	108
BsnI	GGCC	2 cut(s)	468, 537
Bsp120I	GGGCCC	1 cut(s)	466
Bsp1286I	GDGCHC	2 cut(s)	459, 470
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	468, 537
BspLI	GGNNCC	3 cut(s)	468, 592, 648
BssECI	CCNNGG	2 cut(s)	241, 715
BssNI	GRCGYC	1 cut(s)	81
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	241, 715
Bst2BI	CACGAG	1 cut(s)	402
Bst6I	CTCTTC	2 cut(s)	239, 569
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	664
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	4 cut(s)	15, 31, 494, 612
BstHHI	GCGC	1 cut(s)	443
BstPI	GGTNACC	1 cut(s)	323
BstSFI	CTRYAG	1 cut(s)	753
BstSLI	GKGCMC	1 cut(s)	470
BstV1I	GCAGC	5 cut(s)	85, 107, 679, 682, 750
BstV2I	GAAGAC	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	2 cut(s)	468, 537
BtsCI	GGATG	4 cut(s)	15, 31, 494, 612
Cac8I	GCNNGC	1 cut(s)	664
CfoI	GCGC	1 cut(s)	443
Cfr13I	GGNCC	4 cut(s)	466, 467, 591, 647
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	420, 758
CviAII	CATG	2 cut(s)	46, 634
CviQI	GTAC	2 cut(s)	420, 758
DraI	TTTAAA	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	239, 569
EarI	CTCTTC	2 cut(s)	239, 569
Eco130I	CCWWGG	2 cut(s)	241, 715
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	591, 647
Eco57I	CTGAAG	3 cut(s)	297, 349, 569
Eco91I	GGTNACC	1 cut(s)	323
EcoO109I	RGGNCCY	3 cut(s)	466, 591, 647
EcoO65I	GGTNACC	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	241, 715
EcoT38I	GRGCYC	1 cut(s)	470
ErhI	CCWWGG	2 cut(s)	241, 715
FaeI	CATG	2 cut(s)	49, 637
FatI	CATG	2 cut(s)	45, 633
FauNDI	CATATG	1 cut(s)	626
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	5 cut(s)	96, 99, 693, 696, 739
FokI	GGATG	4 cut(s)	22, 38, 481, 599
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	5 cut(s)	96, 99, 693, 696, 739
FspBI	CTAG	2 cut(s)	425, 446
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	5 cut(s)	96, 99, 693, 696, 739
GsaI	CCCAGC	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	468, 537
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	443
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	49, 637
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	664
HinfI	GANTC	1 cut(s)	490
HphI	GGTGA	5 cut(s)	31, 145, 291, 474, 731
Hpy166II	GTNNAC	3 cut(s)	39, 136, 622
Hpy188I	TCNGA	2 cut(s)	506, 514
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	3 cut(s)	39, 136, 622
HpyAV	CCTTC	3 cut(s)	373, 569, 593
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	3 cut(s)	63, 146, 637
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	49, 637
HspAI	GCGC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	749
LpnPI	CCDG	6 cut(s)	63, 180, 348, 423, 572, 663
Lsp1109I	GCAGC	5 cut(s)	85, 107, 679, 682, 750
LweI	GCATC	3 cut(s)	72, 621, 712
MaeI	CTAG	2 cut(s)	425, 446
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	4 cut(s)	17, 151, 323, 358
MboII	GAAGA	6 cut(s)	76, 79, 226, 337, 556, 813
MfeI	CAATTG	2 cut(s)	147, 681
MhlI	GDGCHC	2 cut(s)	459, 470
MluCI	AATT	4 cut(s)	147, 382, 474, 681
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	727
MnlI	CCTC	6 cut(s)	101, 112, 173, 176, 180, 248
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	3 cut(s)	24, 44, 68
MspA1I	CMGCKG	1 cut(s)	98
MunI	CAATTG	2 cut(s)	147, 681
NdeI	CATATG	1 cut(s)	626
NlaIII	CATG	2 cut(s)	49, 637
NlaIV	GGNNCC	3 cut(s)	468, 592, 648
NmeAIII	GCCGAG	1 cut(s)	714
NmuCI	GTSAC	2 cut(s)	17, 151
PkrI	GCNGC	5 cut(s)	97, 100, 694, 697, 740
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PpuMI	RGGWCCY	2 cut(s)	591, 647
Psp5II	RGGWCCY	2 cut(s)	591, 647
PspEI	GGTNACC	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	468, 592, 648
PspOMI	GGGCCC	1 cut(s)	466
PspPI	GGNCC	4 cut(s)	466, 467, 591, 647
PspPPI	RGGWCCY	2 cut(s)	591, 647
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	421, 759
RsaNI	GTAC	2 cut(s)	420, 758
RseI	CAYNNNNRTG	3 cut(s)	24, 44, 68
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	5 cut(s)	96, 99, 693, 696, 739
Sau96I	GGNCC	4 cut(s)	466, 467, 591, 647
ScaI	AGTACT	1 cut(s)	759
SchI	GAGTC	1 cut(s)	484
SduI	GDGCHC	2 cut(s)	459, 470
SfaNI	GCATC	3 cut(s)	72, 621, 712
SfcI	CTRYAG	1 cut(s)	753
SinI	GGWCC	2 cut(s)	591, 647
SmiMI	CAYNNNNRTG	3 cut(s)	24, 44, 68
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SpeI	ACTAGT	1 cut(s)	445
Sse9I	AATT	4 cut(s)	147, 382, 474, 681
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	2 cut(s)	425, 446
StyI	CCWWGG	2 cut(s)	241, 715
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	701
TasI	AATT	4 cut(s)	147, 382, 474, 681
TatI	WGTACW	1 cut(s)	757
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	17, 151
TseI	GCWGC	5 cut(s)	95, 98, 692, 695, 738
Tsp45I	GTSAC	2 cut(s)	17, 151
TspDTI	ATGAA	4 cut(s)	169, 337, 622, 697
VpaK11BI	GGWCC	2 cut(s)	591, 647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	425, 446
ZrmI	AGTACT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.