Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

16081988 .. 16085213

Gene Structure 3226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAGAGAAGCAGGAGAAGAGAAAGTGGCGTGGAAGTACTTTACCAGAGATGTTGTGCCGTTTGCTGCGATGTTTGCGGTGGAGTGTGCCACTGTTGGGTCAAACACGCTGTTTAAGGCTGCTACTTTAAGAGGATTGAGCTTCTATGTCTTTGTCTTCTACTCTTATATTGTTTCAACACTTCTCCTTCTTCCACTTTCTGTAATCTTTGGAAGGTCAAGAAGATTACCAGCAGCTAAGTCTCCTCTTTTCTTCAAGATTTTCTTACTTGGGCTTGTTGGGTTCATGTCGCAGATTGCTGGTTGTAAAGGTATTGCATACAGTTCCCCAACTCTTGCATCTGCTATCAGCAATCTCACACCGGCTTTCACATTCACACTCGCTGTTATCTTCAGGATGGAGCAAGTAAGGTTAAGGAGCTCTGCGACTCAGGCTAAAATCATTGGTGCAATACTATCTATATCTGGTGCTCTGGTAGTTGTGCTGTATAAAGGCCCACAAGTTCTCGCCTCTGCATCTTTTACAACTGTATTACCTACCGTTACACTTCACCAGCAGTTGACCTCAATAGAGTCAAGCTGGATAATCGGAGGGCTCTTGCTTGCTTCACAGTATTTTCTTATATCCGTCTGGTATATTCTTCAGACTCGTGTCATGGAGGTTTACCCTGAAGAGATAACCGTAGTCTTCTTCTACAATTTATTTGCAACACTAATCTCAGTACCAGTATGTCTTTTTGCGGAGAGCAACTTGACTTCTTGGGTGCTTAAACCAGACATTTCCCTCGCTGCAATCATATACTCGGGAGTCTTCGTTTCATTATTCAGCGCGCTTACCCACACATGGGGTCTGCATCTGAAGGGTCCGGTATACATATCCTTGTTCAGGCCATTGTCTATTGCGATTGCAGTCGCCATGGGTGCTATATTCCTCGGCGATGCACTTCACCTTGGGAGTGTCATTGGATCAATGATATTGTGCATTGGATTCTACACTGTGATTTGGGGCAAAGCAAGAGAGGATACAATCAAAACTGTAGCTGGTTCTGAGCAGTCACCTTTGCTGCTTACACATATCATAGAAGATGGAGCCTTTCCATTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

368

Amino Acids

40.09

Weight (kDa)

9.1

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	27 - 161	1.8e-10	EamA-like transporter family
EamA	PF00892	197 - 334	1.1e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	870
AccII	CGCG	1 cut(s)	830
AciI	CCGC	2 cut(s)	77, 740
AclWI	GGATC	1 cut(s)	973
AcuI	CTGAAG	4 cut(s)	376, 626, 690, 878
AfaI	GTAC	2 cut(s)	38, 723
AfiI	CCNNNNNNNGG	4 cut(s)	96, 843, 844, 885
AgsI	TTSAA	2 cut(s)	177, 256
AluBI	AGCT	6 cut(s)	141, 236, 420, 579, 1040, 1104
AluI	AGCT	6 cut(s)	141, 236, 420, 579, 1040, 1104
Alw21I	GWGCWC	2 cut(s)	422, 472
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	973
Ama87I	CYCGRG	1 cut(s)	802
AoxI	GGCC	2 cut(s)	493, 887
ApeKI	GCWGC	5 cut(s)	65, 119, 233, 788, 1063
AspLEI	GCGC	2 cut(s)	830, 832
AspS9I	GGNCC	2 cut(s)	494, 863
AsuHPI	GGTGA	3 cut(s)	542, 938, 1047
AvaI	CYCGRG	1 cut(s)	802
AvaII	GGWCC	1 cut(s)	863
BanII	GRGCYC	2 cut(s)	422, 597
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	3 cut(s)	148, 679, 802
Bbv12I	GWGCWC	2 cut(s)	422, 472
BbvI	GCAGC	5 cut(s)	52, 106, 245, 775, 1050
BccI	CCATC	2 cut(s)	391, 1079
BceAI	ACGGC	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	1015
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	1105
BfmI	CTRYAG	1 cut(s)	1035
BfuI	GTATCC	1 cut(s)	1015
BisI	GCNGC	5 cut(s)	66, 120, 234, 789, 1064
BlsI	GCNGC	5 cut(s)	67, 121, 235, 790, 1065
BmcAI	AGTACT	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	863
BmeT110I	CYCGRG	1 cut(s)	802
BmgT120I	GGNCC	2 cut(s)	494, 863
BmiI	GGNNCC	2 cut(s)	864, 1090
BmsI	GCATC	4 cut(s)	347, 524, 862, 928
BoxI	GACNNNNGTC	1 cut(s)	650
BpiI	GAAGAC	3 cut(s)	148, 679, 802
BsaJI	CCNNGG	3 cut(s)	915, 931, 949
BsaWI	WCCGGW	1 cut(s)	865
BsaXI	ACNNNNNCTCC	2 cut(s)	798, 828
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 843, 844, 885
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	725
BseDI	CCNNGG	3 cut(s)	915, 931, 949
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	96, 843, 844, 885
BseMII	CTCAG	3 cut(s)	443, 732, 1038
BseNI	ACTGG	1 cut(s)	725
BsePI	GCGCGC	1 cut(s)	828
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	5 cut(s)	52, 106, 245, 775, 1050
Bsh1236I	CGCG	1 cut(s)	830
BshFI	GGCC	2 cut(s)	495, 889
BsiHKAI	GWGCWC	2 cut(s)	422, 472
BsiHKCI	CYCGRG	1 cut(s)	802
BsiSI	CCGG	2 cut(s)	362, 866
BslI	CCNNNNNNNGG	4 cut(s)	96, 843, 844, 885
BsmAI	GTCTC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	495, 889
BsoBI	CYCGRG	1 cut(s)	802
Bsp1286I	GDGCHC	3 cut(s)	422, 472, 597
Bsp143I	GATC	1 cut(s)	965
Bsp19I	CCATGG	1 cut(s)	915
BspACI	CCGC	2 cut(s)	77, 740
BspANI	GGCC	2 cut(s)	495, 889
BspCNI	CTCAG	3 cut(s)	442, 731, 1039
BspFNI	CGCG	1 cut(s)	830
BspLI	GGNNCC	2 cut(s)	864, 1090
BspPI	GGATC	1 cut(s)	973
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	725
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	3 cut(s)	915, 931, 949
BssHII	GCGCGC	1 cut(s)	828
BssMI	GATC	1 cut(s)	965
BssNAI	GTATAC	1 cut(s)	871
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	2 cut(s)	915, 949
Bst1107I	GTATAC	1 cut(s)	871
Bst2BI	CACGAG	1 cut(s)	648
Bst4CI	ACNGT	8 cut(s)	94, 323, 529, 541, 612, 682, 997, 1036
Bst6I	CTCTTC	2 cut(s)	12, 666
BstC8I	GCNNGC	2 cut(s)	603, 830
BstDEI	CTNAG	4 cut(s)	237, 429, 718, 1047
BstDSI	CCRYGG	1 cut(s)	915
BstENI	CCTNNNNNAGG	1 cut(s)	883
BstF5I	GGATG	1 cut(s)	402
BstFNI	CGCG	1 cut(s)	830
BstHHI	GCGC	2 cut(s)	830, 832
BstKTI	GATC	1 cut(s)	968
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	965
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 431, 920
BstPAI	GACNNNNGTC	1 cut(s)	650
BstSFI	CTRYAG	1 cut(s)	1035
BstUI	CGCG	1 cut(s)	830
BstV1I	GCAGC	5 cut(s)	52, 106, 245, 775, 1050
BstV2I	GAAGAC	3 cut(s)	148, 679, 802
BstZ17I	GTATAC	1 cut(s)	871
BsuI	GTATCC	1 cut(s)	1015
BsuRI	GGCC	2 cut(s)	495, 889
BtgI	CCRYGG	1 cut(s)	915
BtgZI	GCGATG	2 cut(s)	83, 951
BtsCI	GGATG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	90, 993
Cac8I	GCNNGC	2 cut(s)	603, 830
CfoI	GCGC	2 cut(s)	830, 832
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	494, 863
Csp6I	GTAC	2 cut(s)	37, 722
CviAII	CATG	4 cut(s)	286, 655, 843, 916
CviQI	GTAC	2 cut(s)	37, 722
DdeI	CTNAG	4 cut(s)	237, 429, 718, 1047
DpnI	GATC	1 cut(s)	967
DpnII	GATC	1 cut(s)	965
Eam1104I	CTCTTC	2 cut(s)	12, 666
EarI	CTCTTC	2 cut(s)	12, 666
Ecl136II	GAGCTC	1 cut(s)	420
Eco130I	CCWWGG	2 cut(s)	915, 949
Eco24I	GRGCYC	2 cut(s)	422, 597
Eco47I	GGWCC	1 cut(s)	863
Eco53kI	GAGCTC	1 cut(s)	420
Eco57I	CTGAAG	4 cut(s)	376, 626, 690, 878
Eco88I	CYCGRG	1 cut(s)	802
EcoICRI	GAGCTC	1 cut(s)	420
EcoNI	CCTNNNNNAGG	1 cut(s)	883
EcoT14I	CCWWGG	2 cut(s)	915, 949
EcoT38I	GRGCYC	2 cut(s)	422, 597
ErhI	CCWWGG	2 cut(s)	915, 949
FaeI	CATG	4 cut(s)	289, 658, 846, 919
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	4 cut(s)	285, 654, 842, 915
FblI	GTMKAC	1 cut(s)	870
Fnu4HI	GCNGC	5 cut(s)	66, 120, 234, 789, 1064
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	2 cut(s)	422, 597
Fsp4HI	GCNGC	5 cut(s)	66, 120, 234, 789, 1064
FspBI	CTAG	1 cut(s)	1105
GlaI	GCGC	2 cut(s)	829, 831
GluI	GCNGC	5 cut(s)	66, 120, 234, 789, 1064
HaeIII	GGCC	2 cut(s)	495, 889
HapII	CCGG	2 cut(s)	362, 866
HhaI	GCGC	2 cut(s)	830, 832
Hin1II	CATG	4 cut(s)	289, 658, 846, 919
Hin6I	GCGC	2 cut(s)	828, 830
HinP1I	GCGC	2 cut(s)	828, 830
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	5 cut(s)	427, 572, 646, 807, 987
HpaII	CCGG	2 cut(s)	362, 866
HphI	GGTGA	3 cut(s)	542, 938, 1047
Hpy166II	GTNNAC	3 cut(s)	561, 664, 871
Hpy188I	TCNGA	4 cut(s)	590, 645, 858, 1048
Hpy188III	TCNNGA	4 cut(s)	219, 256, 394, 804
Hpy8I	GTNNAC	3 cut(s)	561, 664, 871
HpyAV	CCTTC	3 cut(s)	197, 207, 853
HpyCH4III	ACNGT	8 cut(s)	94, 323, 529, 541, 612, 682, 997, 1036
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 431, 920
HpyF3I	CTNAG	4 cut(s)	237, 429, 718, 1047
Hsp92II	CATG	4 cut(s)	289, 658, 846, 919
HspAI	GCGC	2 cut(s)	828, 830
Kzo9I	GATC	1 cut(s)	965
LmnI	GCTCC	3 cut(s)	400, 417, 1088
Lsp1109I	GCAGC	5 cut(s)	52, 106, 245, 775, 1050
LweI	GCATC	4 cut(s)	347, 524, 862, 928
MaeI	CTAG	1 cut(s)	1105
MaeIII	GTNAC	2 cut(s)	541, 1053
MalI	GATC	1 cut(s)	967
MboI	GATC	1 cut(s)	965
MhlI	GDGCHC	3 cut(s)	422, 472, 597
MluCI	AATT	1 cut(s)	697
MlyI	GAGTC	4 cut(s)	421, 581, 640, 816
MnlI	CCTC	9 cut(s)	125, 255, 520, 574, 584, 652, 794, 941, 1012
MseI	TTAA	5 cut(s)	114, 128, 413, 768, 1100
MspI	CCGG	2 cut(s)	362, 866
MvnI	CGCG	1 cut(s)	830
MwoI	GCNNNNNNNGC	3 cut(s)	74, 431, 920
NcoI	CCATGG	1 cut(s)	915
NdeII	GATC	1 cut(s)	965
NlaIII	CATG	4 cut(s)	289, 658, 846, 919
NlaIV	GGNNCC	2 cut(s)	864, 1090
NmeAIII	GCCGAG	1 cut(s)	912
NmuCI	GTSAC	1 cut(s)	1053
PauI	GCGCGC	1 cut(s)	828
PfeI	GAWTC	1 cut(s)	987
PkrI	GCNGC	5 cut(s)	67, 121, 235, 790, 1065
PleI	GAGTC	4 cut(s)	421, 580, 640, 815
PpsI	GAGTC	4 cut(s)	421, 580, 640, 815
PshAI	GACNNNNGTC	1 cut(s)	650
Psp124BI	GAGCTC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	864, 1090
PspPI	GGNCC	2 cut(s)	494, 863
PteI	GCGCGC	1 cut(s)	828
RsaI	GTAC	2 cut(s)	38, 723
RsaNI	GTAC	2 cut(s)	37, 722
SacI	GAGCTC	1 cut(s)	422
SaqAI	TTAA	5 cut(s)	114, 128, 413, 768, 1100
SatI	GCNGC	5 cut(s)	66, 120, 234, 789, 1064
Sau3AI	GATC	1 cut(s)	965
Sau96I	GGNCC	2 cut(s)	494, 863
ScaI	AGTACT	1 cut(s)	38
SchI	GAGTC	4 cut(s)	421, 581, 640, 816
SduI	GDGCHC	3 cut(s)	422, 472, 597
SfaNI	GCATC	4 cut(s)	347, 524, 862, 928
SfcI	CTRYAG	1 cut(s)	1035
SinI	GGWCC	1 cut(s)	863
Sse9I	AATT	1 cut(s)	697
SsiI	CCGC	2 cut(s)	77, 740
SspMI	CTAG	1 cut(s)	1105
SstI	GAGCTC	1 cut(s)	422
StyI	CCWWGG	2 cut(s)	915, 949
TaaI	ACNGT	8 cut(s)	94, 323, 529, 541, 612, 682, 997, 1036
TasI	AATT	1 cut(s)	697
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	987
Tru1I	TTAA	5 cut(s)	114, 128, 413, 768, 1100
Tru9I	TTAA	5 cut(s)	114, 128, 413, 768, 1100
TscAI	CASTG	2 cut(s)	97, 1000
TseFI	GTSAC	1 cut(s)	1053
TseI	GCWGC	5 cut(s)	65, 119, 233, 788, 1063
Tsp45I	GTSAC	1 cut(s)	1053
TspDTI	ATGAA	2 cut(s)	274, 807
TspGWI	ACGGA	1 cut(s)	616
TspRI	CASTG	2 cut(s)	97, 1000
VpaK11BI	GGWCC	1 cut(s)	863
XagI	CCTNNNNNAGG	1 cut(s)	883
XmiI	GTMKAC	1 cut(s)	870
XspI	CTAG	1 cut(s)	1105
ZrmI	AGTACT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.