Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

84557855 .. 84558916

Gene Structure 1062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53821

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCAGGGAGGTCCTGTTACAGAGATGTGTTGCCCTTTACAGCCATGGTTACAGTGGAGATCACCAATGTTGGCTTAAACATCTTATTCAAGTCAGCAACCTCAAAAGGGTTGAGTAACTATGTCTTCATTGTCTACTCTTATGCATTTGCCACTGTTCTTCTTCTCCCTCTTCCTTTCATTTTTCCCAGCAGAACAAGGCTTCCTCCATTCAAGCTCTCTCTTCTCGTTAAAGCTTTCCTACTTGGATTGATCGGGTTTGTGGCAAATTTATGTGCATATAAAGGTATAGATTACGGTTCACCAACTCTTGCTTCAGCTATGAGCAACCTCTCTCCGGCTTTTACATTCATACTTGCCGTCATCTTCAGAATGGAAAGGCTGAGTGTGAGAAGCATCAGCACCCAAGCCAAAGTCATGGGTACTTTAGTGTCAATATCAGGTGCTCTAGTGGTAGTTCTCTATAGAGGCCCAACAGTTCTATCCAATACATCAGAAAAGGATTGGGTAAAAAGTGGCATATTACTTACTGTTGGGTACCTTCTGTTCTCTACCTGGTCAATCCTTCAGGTAATTTCCACAAGCCTAGTAATACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

199

Amino Acids

21.69

Weight (kDa)

9.91

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	25 - 153	1.9e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	537
AccI	GTMKAC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	3 cut(s)	300, 352, 551
AfaI	GTAC	2 cut(s)	424, 539
AfiI	CCNNNNNNNGG	2 cut(s)	108, 337
AgsI	TTSAA	2 cut(s)	91, 214
AjnI	CCWGG	1 cut(s)	554
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AloI	GAACNNNNNNTCC	2 cut(s)	187, 219
AluBI	AGCT	3 cut(s)	217, 236, 320
AluI	AGCT	3 cut(s)	217, 236, 320
Alw21I	GWGCWC	1 cut(s)	448
AoxI	GGCC	1 cut(s)	469
ApoI	RAATTY	1 cut(s)	268
Asp718I	GGTACC	1 cut(s)	537
AspS9I	GGNCC	2 cut(s)	12, 470
AsuHPI	GGTGA	2 cut(s)	55, 294
AvaII	GGWCC	1 cut(s)	12
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BanI	GGYRCC	1 cut(s)	537
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	448
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	556
BfaI	CTAG	2 cut(s)	449, 587
BfmI	CTRYAG	1 cut(s)	463
Bme1390I	CCNGG	1 cut(s)	556
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	2 cut(s)	12, 470
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	1 cut(s)	556
BmsI	GCATC	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	45
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 337
BseBI	CCWGG	1 cut(s)	556
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	108, 337
BseMII	CTCAG	1 cut(s)	374
BseYI	CCCAGC	1 cut(s)	188
BshFI	GGCC	1 cut(s)	471
BshNI	GGYRCC	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	108, 337
BsnI	GGCC	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	2 cut(s)	60, 252
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	537
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	60, 252
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	556
Bst4CI	ACNGT	5 cut(s)	55, 157, 299, 478, 532
Bst6I	CTCTTC	2 cut(s)	177, 228
BstDEI	CTNAG	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	45
BstKTI	GATC	2 cut(s)	63, 255
BstMBI	GATC	2 cut(s)	60, 252
BstNI	CCWGG	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	554
BstSFI	CTRYAG	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	60, 153
Cfr13I	GGNCC	2 cut(s)	12, 470
CsiI	ACCWGGT	1 cut(s)	554
Csp6I	GTAC	2 cut(s)	423, 538
CviAII	CATG	2 cut(s)	46, 418
CviQI	GTAC	2 cut(s)	423, 538
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	2 cut(s)	62, 254
DpnII	GATC	2 cut(s)	60, 252
Eam1104I	CTCTTC	2 cut(s)	177, 228
EarI	CTCTTC	2 cut(s)	177, 228
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	12
Eco57I	CTGAAG	3 cut(s)	300, 352, 551
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	49, 421
FatI	CATG	2 cut(s)	45, 417
FblI	GTMKAC	1 cut(s)	135
FspBI	CTAG	2 cut(s)	449, 587
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	471
HapII	CCGG	1 cut(s)	338
Hin1II	CATG	2 cut(s)	49, 421
HindIII	AAGCTT	1 cut(s)	234
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	2 cut(s)	55, 294
Hpy166II	GTNNAC	2 cut(s)	136, 302
Hpy188I	TCNGA	2 cut(s)	371, 496
Hpy8I	GTNNAC	2 cut(s)	136, 302
HpyAV	CCTTC	2 cut(s)	551, 575
HpyCH4III	ACNGT	5 cut(s)	55, 157, 299, 478, 532
HpyCH4V	TGCA	2 cut(s)	146, 278
HpyF3I	CTNAG	1 cut(s)	383
Hsp92II	CATG	2 cut(s)	49, 421
KpnI	GGTACC	1 cut(s)	541
Kzo9I	GATC	2 cut(s)	60, 252
LpnPI	CCDG	7 cut(s)	28, 202, 351, 426, 541, 554, 568
LweI	GCATC	1 cut(s)	405
MabI	ACCWGGT	1 cut(s)	554
MaeI	CTAG	2 cut(s)	449, 587
MaeIII	GTNAC	3 cut(s)	17, 49, 116
MalI	GATC	2 cut(s)	62, 254
MboI	GATC	2 cut(s)	60, 252
MboII	GAAGA	6 cut(s)	118, 152, 155, 164, 215, 358
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	2 cut(s)	268, 573
MnlI	CCTC	6 cut(s)	3, 112, 180, 216, 341, 461
Mph1103I	ATGCAT	1 cut(s)	148
MseI	TTAA	3 cut(s)	77, 231, 598
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	556
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	60, 252
NlaIII	CATG	2 cut(s)	49, 421
NlaIV	GGNNCC	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	554
PspN4I	GGNNCC	1 cut(s)	539
PspPI	GGNCC	2 cut(s)	12, 470
PspPPI	RGGWCCY	1 cut(s)	12
PsrI	GAACNNNNNNTAC	2 cut(s)	530, 562
RsaI	GTAC	2 cut(s)	424, 539
RsaNI	GTAC	2 cut(s)	423, 538
SaqAI	TTAA	3 cut(s)	77, 231, 598
Sau3AI	GATC	2 cut(s)	60, 252
Sau96I	GGNCC	2 cut(s)	12, 470
ScrFI	CCNGG	1 cut(s)	556
SduI	GDGCHC	1 cut(s)	448
SexAI	ACCWGGT	1 cut(s)	554
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	12
Sse9I	AATT	2 cut(s)	268, 573
SspMI	CTAG	2 cut(s)	449, 587
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	5 cut(s)	55, 157, 299, 478, 532
TasI	AATT	2 cut(s)	268, 573
Tru1I	TTAA	3 cut(s)	77, 231, 598
Tru9I	TTAA	3 cut(s)	77, 231, 598
TscAI	CASTG	2 cut(s)	60, 160
TspDTI	ATGAA	3 cut(s)	118, 169, 340
TspRI	CASTG	2 cut(s)	60, 160
VpaK11BI	GGWCC	1 cut(s)	12
XapI	RAATTY	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	449, 587
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.