Rroxscaffold_2G00081090

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
4078059 .. 4081317
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081090.1

Sequence Viewer

Length: 465 bp
ATGGCAGGGAGGTCTTGTTACAGGGATGGGTTGCCCTTTGCAGCCATGATTACAGTGGAGAGCACCAACGTCGGCTTAAACATCTTATTCAAGTCAGCAACCTCAAAAGGGTTGAGTTATTATGTATTCATTGTCTACTCCTATGCATTTGCCACTGTTCTTCTCCTCCCTCTTCCTTTCATTTTTCCCAGAACGAGGCTTCCTCCATTGAACTTCTCTCTTCTCTTTAAAGCTTTCCTCCTTGGACTGATCGGGTTTGTGGCAAATATATGTGCATATAAAGGTATAGATTACAGTTCACCAACTCTTAGCTTCAGCTGTGAGCAACCTCACTCCGGCTTTTACATTCATACTCGCCGTCATCTTCAGGATGGAAAGGCTGAGTTTGAGAAGCACCAACACTCAAGCCAAAGTCATGGGTACTATAGTGTTAATATCAGGTGGTCTTGTAGTGGTTCTCTGTAA

Protein Analysis

154

Amino Acids

17.28

Weight (kDa)

9.25

Isoelectric Point (pI)

60.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AcuI CTGAAG 2 cut(s) 298, 350
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 3 cut(s) 108, 195, 335
AgsI TTSAA 2 cut(s) 91, 211
AloI GAACNNNNNNTCC 2 cut(s) 184, 216
AluBI AGCT 3 cut(s) 233, 312, 318
AluI AGCT 3 cut(s) 233, 312, 318
Alw21I GWGCWC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 291
BaeI ACNNNNGTAYC 2 cut(s) 412, 445
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 53
BccI CCATC 2 cut(s) 20, 365
BceAI ACGGC 1 cut(s) 342
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BfmI CTRYAG 1 cut(s) 424
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BpuEI CTTGAG 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 241
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 195, 335
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 2 cut(s) 31, 376
BseLI CCNNNNNNNGG 3 cut(s) 108, 195, 335
BseMII CTCAG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 336
BslI CCNNNNNNNGG 3 cut(s) 108, 195, 335
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 241
Bst4CI ACNGT 3 cut(s) 55, 157, 296
Bst6I CTCTTC 2 cut(s) 177, 225
BstDEI CTNAG 2 cut(s) 308, 381
BstF5I GGATG 2 cut(s) 31, 376
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 424
BstV1I GCAGC 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 416
BtsCI GGATG 2 cut(s) 31, 376
BtsIMutI CAGTG 2 cut(s) 60, 153
Csp6I GTAC 1 cut(s) 421
CviAII CATG 2 cut(s) 46, 416
CviJI RGCY 9 cut(s) 44, 75, 199, 233, 312, 318, 339, 380, 408
CviKI_1 RGCY 9 cut(s) 44, 75, 199, 233, 312, 318, 339, 380, 408
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 2 cut(s) 308, 381
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
DraI TTTAAA 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 177, 225
EarI CTCTTC 2 cut(s) 177, 225
Eco130I CCWWGG 1 cut(s) 241
Eco57I CTGAAG 2 cut(s) 298, 350
EcoT14I CCWWGG 1 cut(s) 241
EcoT22I ATGCAT 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 2 cut(s) 49, 419
FatI CATG 2 cut(s) 45, 415
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 2 cut(s) 38, 383
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
HapII CCGG 1 cut(s) 336
Hin1II CATG 2 cut(s) 49, 419
HindIII AAGCTT 1 cut(s) 231
HpaII CCGG 1 cut(s) 336
HphI GGTGA 1 cut(s) 291
Hpy166II GTNNAC 2 cut(s) 136, 299
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 2 cut(s) 136, 299
Hpy99I CGWCG 1 cut(s) 74
HpyCH4III ACNGT 3 cut(s) 55, 157, 296
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 41, 146, 275
HpyF3I CTNAG 2 cut(s) 308, 381
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 2 cut(s) 49, 419
Kzo9I GATC 1 cut(s) 249
LpnPI CCDG 5 cut(s) 7, 202, 349, 353, 424
Lsp1109I GCAGC 1 cut(s) 53
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 4 cut(s) 152, 164, 212, 356
MhlI GDGCHC 1 cut(s) 65
MnlI CCTC 8 cut(s) 3, 112, 176, 180, 189, 213, 248, 339
Mph1103I ATGCAT 1 cut(s) 148
MseI TTAA 3 cut(s) 77, 228, 432
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 1 cut(s) 336
NdeII GATC 1 cut(s) 249
NlaIII CATG 2 cut(s) 49, 419
NsiI ATGCAT 1 cut(s) 148
PkrI GCNGC 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 318
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SaqAI TTAA 3 cut(s) 77, 228, 432
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 249
SduI GDGCHC 1 cut(s) 65
SetI ASST 9 cut(s) 14, 72, 104, 235, 286, 314, 320, 331, 443
SfcI CTRYAG 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 3 cut(s) 55, 157, 296
TaiI ACGT 1 cut(s) 72
Tru1I TTAA 3 cut(s) 77, 228, 432
Tru9I TTAA 3 cut(s) 77, 228, 432
TscAI CASTG 2 cut(s) 60, 160
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 118, 169, 338
TspRI CASTG 2 cut(s) 60, 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.