Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030505.1

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Forward (+)

1168 .. 2834

Gene Structure 1667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030505.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atggcatggaggtatgctcagaaggatttaattctgccattcaccgccatggttacaatggaatgcatctatgttgggttgaacatcttctttaaagcagccacctcaagagggttaagctactatgtcttcattgtctactcttatgcagttgctactcttcttctccttcctctacctttcatctttcgcagaacagggcttcctccattcaagctctcactcctctttgaactcttcctccttggactgacaaggtttttgggtaatttatgtctatataaaggtattgaatacagttcaccaactcttgcttctgctattggcaacctgtctccagcttttgtattcatactagctgtaatcttcaggatggaaagtctaagtttcagaagcagcagcagtcaagccaaagtcatgggcactttagtatcaatatcaggtgcaatggtagtggttctctataagggaccaactattctatccactacagcagaaaagaattgggtaaaaggtggcctattggtcgctgttgggttccttatgttctcaacctggtctatccttcagaaacatatcatgaagacaacgtgcacagatgagctagtccttgccttcttaaacaacctgtgtgggacaattatatcagcacctgtatgtttcttagaagaaaaagagttgggtgcctggatagtgaggcctggtataccgttgcttgccattttatactcgggagcctttggttcatccctcaacattctagttcacatgtggggcgtgaacgtcaagggtcctgtctatgtatcgagcttcaagccattgtcaattgccattgctgcagcttctggtgtcattttccttggtgatgatctccatcttggcatgtctgtctctttctctcttcatgttattgttgttggagctgtaatgctatccatagggttgtttgcagtactatggggaaaggcaaaggaagaagaaatgagtgaagactcttgctttggtagcttgagagggttacctatttgtaagaaacctctgttggaaagctacaaagttgaaaacatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

356

Amino Acids

38.89

Weight (kDa)

8.98

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	683
AccI	GTMKAC	2 cut(s)	138, 706
AciI	CCGC	1 cut(s)	45
AcuI	CTGAAG	2 cut(s)	352, 551
AfaI	GTAC	1 cut(s)	954
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflIII	ACRYGT	2 cut(s)	768, 1065
AgsI	TTSAA	6 cut(s)	82, 214, 233, 293, 814, 1061
AjnI	CCWGG	3 cut(s)	554, 686, 700
AjuI	GAANNNNNNNTTGG	4 cut(s)	298, 330, 1025, 1057
AloI	GAACNNNNNNTCC	4 cut(s)	187, 219, 225, 257
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	2 cut(s)	339, 895
Alw44I	GTGCAC	1 cut(s)	592
AlwNI	CAGNNNCTG	2 cut(s)	653, 845
Ama87I	CYCGRG	1 cut(s)	730
AoxI	GGCC	2 cut(s)	517, 698
ApaLI	GTGCAC	1 cut(s)	592
ApeKI	GCWGC	5 cut(s)	98, 396, 399, 836, 839
ArsI	GACNNNNNNTTYG	4 cut(s)	244, 276, 983, 1015
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	470, 791
AsuHPI	GGTGA	3 cut(s)	34, 294, 875
AvaI	CYCGRG	1 cut(s)	730
AvaII	GGWCC	2 cut(s)	470, 791
BaeGI	GKGCMC	2 cut(s)	425, 596
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BanI	GGYRCC	1 cut(s)	683
BbsI	GAAGAC	3 cut(s)	121, 590, 996
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	5 cut(s)	110, 408, 411, 823, 851
BccI	CCATC	2 cut(s)	367, 882
BciT130I	CCWGG	3 cut(s)	556, 688, 702
BcoDI	GTCTC	2 cut(s)	339, 895
BfaI	CTAG	3 cut(s)	356, 605, 761
BfmI	CTRYAG	2 cut(s)	489, 837
BisI	GCNGC	5 cut(s)	99, 397, 400, 837, 840
BlsI	GCNGC	5 cut(s)	100, 398, 401, 838, 841
BmcAI	AGTACT	1 cut(s)	954
Bme1390I	CCNGG	3 cut(s)	556, 688, 702
Bme18I	GGWCC	2 cut(s)	470, 791
BmeT110I	CYCGRG	1 cut(s)	730
BmgT120I	GGNCC	2 cut(s)	470, 791
BmiI	GGNNCC	5 cut(s)	471, 539, 685, 736, 792
BmrFI	CCNGG	3 cut(s)	556, 688, 702
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	3 cut(s)	121, 590, 996
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	321
BpuEI	CTTGAG	2 cut(s)	91, 1030
BsaBI	GATNNNNATC	1 cut(s)	873
BsaJI	CCNNGG	3 cut(s)	48, 244, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse3DI	GCAATG	2 cut(s)	453, 831
Bse8I	GATNNNNATC	1 cut(s)	873
BseBI	CCWGG	3 cut(s)	556, 688, 702
BseDI	CCNNGG	3 cut(s)	48, 244, 859
BseGI	GGATG	2 cut(s)	378, 746
BseJI	GATNNNNATC	1 cut(s)	873
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	2 cut(s)	453, 831
BseMII	CTCAG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	2 cut(s)	425, 596
BseXI	GCAGC	5 cut(s)	110, 408, 411, 823, 851
BshFI	GGCC	2 cut(s)	519, 700
BshNI	GGYRCC	1 cut(s)	683
BsiHKAI	GWGCWC	1 cut(s)	596
BsiHKCI	CYCGRG	1 cut(s)	730
BslFI	GGGAC	2 cut(s)	483, 649
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	2 cut(s)	339, 895
BsmFI	GGGAC	2 cut(s)	483, 649
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	519, 700
BsoBI	CYCGRG	1 cut(s)	730
Bsp1286I	GDGCHC	2 cut(s)	425, 596
Bsp143I	GATC	1 cut(s)	868
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	2 cut(s)	519, 700
BspCNI	CTCAG	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	5 cut(s)	471, 539, 685, 736, 792
BspMAI	CTGCAG	1 cut(s)	841
BspT107I	GGYRCC	1 cut(s)	683
BsrDI	GCAATG	2 cut(s)	453, 831
BssECI	CCNNGG	3 cut(s)	48, 244, 859
BssMI	GATC	1 cut(s)	868
BssNAI	GTATAC	1 cut(s)	707
BssT1I	CCWWGG	3 cut(s)	48, 244, 859
Bst1107I	GTATAC	1 cut(s)	707
Bst2UI	CCWGG	3 cut(s)	556, 688, 702
Bst4CI	ACNGT	2 cut(s)	299, 711
Bst6I	CTCTTC	3 cut(s)	165, 242, 906
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	3 cut(s)	18, 383, 664
BstDSI	CCRYGG	1 cut(s)	48
BstEII	GGTNACC	1 cut(s)	1017
BstF5I	GGATG	2 cut(s)	378, 746
BstKTI	GATC	1 cut(s)	871
BstMAI	GTCTC	2 cut(s)	339, 895
BstMBI	GATC	1 cut(s)	868
BstMWI	GCNNNNNNNGC	2 cut(s)	836, 1005
BstNI	CCWGG	3 cut(s)	556, 688, 702
BstNSI	RCATGY	3 cut(s)	772, 886, 1069
BstPI	GGTNACC	1 cut(s)	1017
BstSCI	CCNGG	3 cut(s)	554, 686, 700
BstSFI	CTRYAG	2 cut(s)	489, 837
BstSLI	GKGCMC	2 cut(s)	425, 596
BstV1I	GCAGC	5 cut(s)	110, 408, 411, 823, 851
BstV2I	GAAGAC	3 cut(s)	121, 590, 996
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstZ17I	GTATAC	1 cut(s)	707
BsuRI	GGCC	2 cut(s)	519, 700
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	378, 746
Cac8I	GCNNGC	1 cut(s)	717
CaiI	CAGNNNCTG	2 cut(s)	653, 845
CciI	TCATGA	1 cut(s)	579
Cfr13I	GGNCC	2 cut(s)	470, 791
CsiI	ACCWGGT	1 cut(s)	554
Csp6I	GTAC	1 cut(s)	953
CspCI	CAANNNNNGTGG	4 cut(s)	435, 470, 613, 648
CviAII	CATG	8 cut(s)	6, 49, 418, 580, 769, 883, 905, 1066
CviQI	GTAC	1 cut(s)	953
DdeI	CTNAG	3 cut(s)	18, 383, 664
DpnI	GATC	1 cut(s)	870
DpnII	GATC	1 cut(s)	868
DraI	TTTAAA	1 cut(s)	94
Eam1104I	CTCTTC	3 cut(s)	165, 242, 906
EarI	CTCTTC	3 cut(s)	165, 242, 906
Eco130I	CCWWGG	3 cut(s)	48, 244, 859
Eco147I	AGGCCT	1 cut(s)	700
Eco47I	GGWCC	2 cut(s)	470, 791
Eco57I	CTGAAG	2 cut(s)	352, 551
Eco88I	CYCGRG	1 cut(s)	730
Eco91I	GGTNACC	1 cut(s)	1017
EcoO109I	RGGNCCY	1 cut(s)	791
EcoO65I	GGTNACC	1 cut(s)	1017
EcoRII	CCWGG	3 cut(s)	554, 686, 700
EcoT14I	CCWWGG	3 cut(s)	48, 244, 859
EcoT22I	ATGCAT	1 cut(s)	68
ErhI	CCWWGG	3 cut(s)	48, 244, 859
FaeI	CATG	8 cut(s)	9, 52, 421, 583, 772, 886, 908, 1069
FaqI	GGGAC	2 cut(s)	483, 649
FatI	CATG	8 cut(s)	5, 48, 417, 579, 768, 882, 904, 1065
FblI	GTMKAC	2 cut(s)	138, 706
Fnu4HI	GCNGC	5 cut(s)	99, 397, 400, 837, 840
FokI	GGATG	2 cut(s)	385, 733
Fsp4HI	GCNGC	5 cut(s)	99, 397, 400, 837, 840
FspBI	CTAG	3 cut(s)	356, 605, 761
GluI	GCNGC	5 cut(s)	99, 397, 400, 837, 840
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	519, 700
Hin1II	CATG	8 cut(s)	9, 52, 421, 583, 772, 886, 908, 1069
HinfI	GANTC	1 cut(s)	992
HphI	GGTGA	3 cut(s)	34, 294, 875
Hpy166II	GTNNAC	6 cut(s)	139, 302, 594, 707, 766, 781
Hpy188I	TCNGA	3 cut(s)	21, 392, 570
Hpy188III	TCNNGA	4 cut(s)	108, 370, 580, 732
Hpy8I	GTNNAC	6 cut(s)	139, 302, 594, 707, 766, 781
HpyAV	CCTTC	4 cut(s)	16, 179, 575, 625
HpyCH4III	ACNGT	2 cut(s)	299, 711
HpyCH4IV	ACGT	2 cut(s)	590, 783
HpyCH4V	TGCA	6 cut(s)	66, 149, 446, 594, 839, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	836, 1005
HpyF3I	CTNAG	3 cut(s)	18, 383, 664
HpySE526I	ACGT	2 cut(s)	590, 783
Hsp92II	CATG	8 cut(s)	9, 52, 421, 583, 772, 886, 908, 1069
Kzo9I	GATC	1 cut(s)	868
LmnI	GCTCC	2 cut(s)	734, 920
Lsp1109I	GCAGC	5 cut(s)	110, 408, 411, 823, 851
LweI	GCATC	1 cut(s)	75
MabI	ACCWGGT	1 cut(s)	554
MaeI	CTAG	3 cut(s)	356, 605, 761
MaeII	ACGT	2 cut(s)	590, 783
MaeIII	GTNAC	2 cut(s)	52, 1017
MalI	GATC	1 cut(s)	870
MboI	GATC	1 cut(s)	868
MfeI	CAATTG	1 cut(s)	825
MhlI	GDGCHC	2 cut(s)	425, 596
MluCI	AATT	5 cut(s)	30, 268, 502, 639, 825
MlyI	GAGTC	1 cut(s)	986
MmeI	TCCRAC	2 cut(s)	898, 1023
Mph1103I	ATGCAT	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	4 cut(s)	29, 93, 116, 620
MslI	CAYNNNNRTG	2 cut(s)	47, 655
MspR9I	CCNGG	3 cut(s)	556, 688, 702
MunI	CAATTG	1 cut(s)	825
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	3 cut(s)	556, 688, 702
MwoI	GCNNNNNNNGC	2 cut(s)	836, 1005
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	868
NlaIII	CATG	8 cut(s)	9, 52, 421, 583, 772, 886, 908, 1069
NlaIV	GGNNCC	5 cut(s)	471, 539, 685, 736, 792
NsiI	ATGCAT	1 cut(s)	68
NspI	RCATGY	3 cut(s)	772, 886, 1069
PagI	TCATGA	1 cut(s)	579
PceI	AGGCCT	1 cut(s)	700
PciI	ACATGT	2 cut(s)	768, 1065
PctI	GAATGC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	86
PkrI	GCNGC	5 cut(s)	100, 398, 401, 838, 841
PleI	GAGTC	1 cut(s)	986
PpsI	GAGTC	1 cut(s)	986
PpuMI	RGGWCCY	1 cut(s)	791
PscI	ACATGT	2 cut(s)	768, 1065
Psp5II	RGGWCCY	1 cut(s)	791
Psp6I	CCWGG	3 cut(s)	554, 686, 700
PspEI	GGTNACC	1 cut(s)	1017
PspGI	CCWGG	3 cut(s)	554, 686, 700
PspN4I	GGNNCC	5 cut(s)	471, 539, 685, 736, 792
PspPI	GGNCC	2 cut(s)	470, 791
PspPPI	RGGWCCY	1 cut(s)	791
PstI	CTGCAG	1 cut(s)	841
PstNI	CAGNNNCTG	2 cut(s)	653, 845
RsaI	GTAC	1 cut(s)	954
RsaNI	GTAC	1 cut(s)	953
RseI	CAYNNNNRTG	2 cut(s)	47, 655
SaqAI	TTAA	4 cut(s)	29, 93, 116, 620
SatI	GCNGC	5 cut(s)	99, 397, 400, 837, 840
Sau3AI	GATC	1 cut(s)	868
Sau96I	GGNCC	2 cut(s)	470, 791
ScaI	AGTACT	1 cut(s)	954
SchI	GAGTC	1 cut(s)	986
ScrFI	CCNGG	3 cut(s)	556, 688, 702
SduI	GDGCHC	2 cut(s)	425, 596
SexAI	ACCWGGT	1 cut(s)	554
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	2 cut(s)	489, 837
SinI	GGWCC	2 cut(s)	470, 791
SmiMI	CAYNNNNRTG	2 cut(s)	47, 655
SmlI	CTYRAG	2 cut(s)	106, 1009
SmoI	CTYRAG	2 cut(s)	106, 1009
Sse9I	AATT	5 cut(s)	30, 268, 502, 639, 825
SseBI	AGGCCT	1 cut(s)	700
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	3 cut(s)	356, 605, 761
StuI	AGGCCT	1 cut(s)	700
StyD4I	CCNGG	3 cut(s)	554, 686, 700
StyI	CCWWGG	3 cut(s)	48, 244, 859
TaaI	ACNGT	2 cut(s)	299, 711
TaiI	ACGT	2 cut(s)	593, 786
TaqI	TCGA	1 cut(s)	806
TasI	AATT	5 cut(s)	30, 268, 502, 639, 825
TatI	WGTACW	1 cut(s)	952
Tru1I	TTAA	4 cut(s)	29, 93, 116, 620
Tru9I	TTAA	4 cut(s)	29, 93, 116, 620
TseI	GCWGC	5 cut(s)	98, 396, 399, 836, 839
TspDTI	ATGAA	6 cut(s)	121, 172, 340, 596, 735, 893
VneI	GTGCAC	1 cut(s)	592
VpaK11BI	GGWCC	2 cut(s)	470, 791
XceI	RCATGY	3 cut(s)	772, 886, 1069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XmiI	GTMKAC	2 cut(s)	138, 706
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	3 cut(s)	356, 605, 761
ZrmI	AGTACT	1 cut(s)	954
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.