Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8399817.1

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Forward (+)

446 .. 1103

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8399817.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgaagacatacccggctgagctagttttggcactgttatacaacttgtttggaacaattgtatcagcaccagtgtgtgtactaatagctgaaacaaagttaagtgcctggagactaaggcctggggtagcattggctgccattatatactcggggctctttagtacagccttgagcacccttgttaagacatggagcctaaacttgaaaggtcctgtgtatgtatcaatcttcagtccattgtcaattgtcattgctgctgcatccagtgtcatattcctcggtgataatctctttctcggcagtgttgttggagctgtaatgataagcatagggttttatggggtaatatggggacaggcaaaggaagaagaaatgaaagatcaagactatggctttgatagcttgagaggattacatagtggtaaggcaccattattggaaacctacaaagttgaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

154

Amino Acids

16.57

Weight (kDa)

6.56

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	2 cut(s)	81, 166
AgsI	TTSAA	2 cut(s)	208, 458
AjnI	CCWGG	2 cut(s)	107, 121
AleI	CACNNNNGTG	1 cut(s)	73
AluBI	AGCT	4 cut(s)	22, 89, 317, 405
AluI	AGCT	4 cut(s)	22, 89, 317, 405
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	151
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	3 cut(s)	137, 257, 260
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	212
BaeI	ACNNNNGTAYC	2 cut(s)	45, 78
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	124, 244, 247
BciT130I	CCWGG	2 cut(s)	109, 123
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	3 cut(s)	138, 258, 261
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	3 cut(s)	139, 259, 262
Bme1390I	CCNGG	3 cut(s)	14, 109, 123
Bme18I	GGWCC	1 cut(s)	212
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	197, 432
BmrFI	CCNGG	3 cut(s)	14, 109, 123
BmsI	GCATC	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	2 cut(s)	193, 427
BpuMI	CCSGG	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	122, 280
Bse1I	ACTGG	2 cut(s)	71, 267
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	109, 123
BseDI	CCNNGG	2 cut(s)	122, 280
BseGI	GGATG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	2 cut(s)	71, 267
BseXI	GCAGC	3 cut(s)	124, 244, 247
BshFI	GGCC	1 cut(s)	121
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	369
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	121
BsoBI	CYCGRG	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	159, 179
Bsp143I	GATC	1 cut(s)	382
Bsp1720I	GCTNAGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	197, 432
BspT107I	GGYRCC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	71, 267
BssECI	CCNNGG	2 cut(s)	122, 280
BssMI	GATC	1 cut(s)	382
Bst2UI	CCWGG	2 cut(s)	109, 123
Bst4CI	ACNGT	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstDEI	CTNAG	2 cut(s)	18, 116
BstF5I	GGATG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 402
BstNI	CCWGG	2 cut(s)	109, 123
BstSCI	CCNGG	3 cut(s)	12, 107, 121
BstV1I	GCAGC	3 cut(s)	124, 244, 247
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	263
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	4 cut(s)	32, 78, 274, 310
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	80, 165
CviAII	CATG	1 cut(s)	192
CviQI	GTAC	2 cut(s)	80, 165
DdeI	CTNAG	2 cut(s)	18, 116
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
Eco147I	AGGCCT	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	107, 121
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	1 cut(s)	195
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	1 cut(s)	191
Fnu4HI	GCNGC	3 cut(s)	138, 258, 261
FokI	GGATG	1 cut(s)	250
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	3 cut(s)	138, 258, 261
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	3 cut(s)	138, 258, 261
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	14
Hin1II	CATG	1 cut(s)	195
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 402
HpyF3I	CTNAG	2 cut(s)	18, 116
Hsp92II	CATG	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	195, 314
LpnPI	CCDG	9 cut(s)	27, 84, 94, 108, 121, 135, 228, 280, 344
Lsp1109I	GCAGC	3 cut(s)	124, 244, 247
LweI	GCATC	1 cut(s)	272
MaeI	CTAG	1 cut(s)	23
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	4 cut(s)	16, 223, 380, 383
MfeI	CAATTG	2 cut(s)	57, 246
MhlI	GDGCHC	2 cut(s)	159, 179
MluCI	AATT	2 cut(s)	57, 246
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	2 cut(s)	290, 404
MseI	TTAA	2 cut(s)	101, 186
MslI	CAYNNNNRTG	1 cut(s)	73
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	3 cut(s)	14, 109, 123
MunI	CAATTG	2 cut(s)	57, 246
MvaI	CCWGG	2 cut(s)	109, 123
MwoI	GCNNNNNNNGC	2 cut(s)	137, 402
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	1 cut(s)	195
NlaIV	GGNNCC	2 cut(s)	197, 432
NmeAIII	GCCGAG	1 cut(s)	279
OliI	CACNNNNGTG	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	139, 259, 262
PpuMI	RGGWCCY	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	107, 121
PspGI	CCWGG	2 cut(s)	107, 121
PspN4I	GGNNCC	2 cut(s)	197, 432
PspPI	GGNCC	1 cut(s)	212
PspPPI	RGGWCCY	1 cut(s)	212
RsaI	GTAC	2 cut(s)	81, 166
RsaNI	GTAC	2 cut(s)	80, 165
RseI	CAYNNNNRTG	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	101, 186
SatI	GCNGC	3 cut(s)	138, 258, 261
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	3 cut(s)	14, 109, 123
SduI	GDGCHC	2 cut(s)	159, 179
SetI	ASST	6 cut(s)	24, 91, 214, 319, 407, 449
SfaNI	GCATC	1 cut(s)	272
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	73
SmlI	CTYRAG	2 cut(s)	172, 406
SmoI	CTYRAG	2 cut(s)	172, 406
Sse9I	AATT	2 cut(s)	57, 246
SseBI	AGGCCT	1 cut(s)	121
SspMI	CTAG	1 cut(s)	23
StuI	AGGCCT	1 cut(s)	121
StyD4I	CCNGG	3 cut(s)	12, 107, 121
TaaI	ACNGT	1 cut(s)	36
TasI	AATT	2 cut(s)	57, 246
TatI	WGTACW	2 cut(s)	79, 164
Tru1I	TTAA	2 cut(s)	101, 186
Tru9I	TTAA	2 cut(s)	101, 186
TscAI	CASTG	4 cut(s)	39, 78, 274, 310
TseI	GCWGC	3 cut(s)	137, 257, 260
TspDTI	ATGAA	2 cut(s)	17, 392
TspRI	CASTG	4 cut(s)	39, 78, 274, 310
VpaK11BI	GGWCC	1 cut(s)	212
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.