Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

84757353 .. 84759064

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG623800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTTGTTCTTAATGTATTTACATTACGATATTGTCTCCCTGTGTGTGAGAGAAAGAGAGGAGATGGCAATGGCATGGAGGTACTATCATAAGGATGTTCTACCGTTCATCGCCATGGTTACAATGGAGTGCACTAATGTTGGGTTAAACGTCTTATTCAAAGCAGCCACCTTAAGAGGGTTGAGCTACTATGTCTTCATTGTCTACTCTTATGCAATTGGCACCATTCTTCTGTTTCCTCTGACTTTCATCTTTCGCAGAACAGAACTTCCTCCCTTCAAGCTCACTCTCCTCTTTAAACTAAAAGGATTGGATAGAAGGTGGCCTATTACTTACTGTTGGGTACCTTCTATTCTCAGCCTGGTGTATCCTTCAGACACATATCATGAAGATATACCCCCGGTTGAGCTAGTTCTGGCCTTCTTATACAACTTGTGTGGCACAATTATATTGGCACCAGTATGTTTCTTAGCTGAAAGAAACTTGAGTGCCTGGAGACCACAACCTGTTATTCCGTTGCCTGCCATTATCTACTCGGGAGAATTTGGTTCATCCGTCAGCATTCTAGTTCACATATGGGGCCTGCACTTGAAGGGTCCTGTTTATATTTCGAGCTTCAAGCCATTGTCAATTGCAATTGCTGCTGCTTTCGGTGTCATATTCCTTGGTGATGGTCTCTCTCTTGGCAGTGTTGTTGGAGCTGCAACGCTATCAATAGGTTTTTATGCAGTACTTTGGGGAAAAGGGAAAAGAAGAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

254

Amino Acids

28.7

Weight (kDa)

9.16

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	131 - 245	3.5e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	343
AccB1I	GGYRCC	3 cut(s)	221, 343, 454
AccI	GTMKAC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	3 cut(s)	83, 345, 732
AfiI	CCNNNNNNNGG	1 cut(s)	177
AflII	CTTAAG	1 cut(s)	172
AgsI	TTSAA	4 cut(s)	160, 280, 592, 619
AjnI	CCWGG	2 cut(s)	360, 491
AloI	GAACNNNNNNTCC	2 cut(s)	253, 285
AluBI	AGCT	6 cut(s)	186, 283, 409, 473, 615, 701
AluI	AGCT	6 cut(s)	186, 283, 409, 473, 615, 701
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	3 cut(s)	40, 490, 680
Alw44I	GTGCAC	1 cut(s)	130
Ama87I	CYCGRG	1 cut(s)	535
AoxI	GGCC	3 cut(s)	323, 417, 580
ApaLI	GTGCAC	1 cut(s)	130
ApeKI	GCWGC	4 cut(s)	164, 641, 644, 701
ApoI	RAATTY	1 cut(s)	542
Asp718I	GGTACC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	580, 596
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	680
AvaI	CYCGRG	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	134
BanI	GGYRCC	3 cut(s)	221, 343, 454
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	176, 628, 631, 688
BccI	CCATC	2 cut(s)	58, 665
BciT130I	CCWGG	2 cut(s)	362, 493
BciVI	GTATCC	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	3 cut(s)	40, 490, 680
BfaI	CTAG	2 cut(s)	410, 566
BfrI	CTTAAG	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	378
BisI	GCNGC	4 cut(s)	165, 642, 645, 702
BlsI	GCNGC	4 cut(s)	166, 643, 646, 703
BmcAI	AGTACT	1 cut(s)	732
Bme1390I	CCNGG	3 cut(s)	362, 401, 493
Bme18I	GGWCC	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	535
BmgT120I	GGNCC	2 cut(s)	580, 596
BmiI	GGNNCC	5 cut(s)	223, 345, 456, 581, 597
BmrFI	CCNGG	3 cut(s)	362, 401, 493
BpiI	GAAGAC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	505
BpuMI	CCSGG	1 cut(s)	401
BsaI	GGTCTC	2 cut(s)	490, 680
BsaJI	CCNNGG	3 cut(s)	114, 399, 664
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	362, 493
BseDI	CCNNGG	3 cut(s)	114, 399, 664
BseGI	GGATG	2 cut(s)	100, 551
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	370
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	2 cut(s)	74, 281
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	4 cut(s)	176, 628, 631, 688
BsgI	GTGCAG	1 cut(s)	569
BshFI	GGCC	3 cut(s)	325, 419, 582
BshNI	GGYRCC	3 cut(s)	221, 343, 454
BsiHKAI	GWGCWC	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	535
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmAI	GTCTC	3 cut(s)	40, 490, 680
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	3 cut(s)	325, 419, 582
Bso31I	GGTCTC	2 cut(s)	490, 680
BsoBI	CYCGRG	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp19I	CCATGG	1 cut(s)	114
BspANI	GGCC	3 cut(s)	325, 419, 582
BspCNI	CTCAG	1 cut(s)	369
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	5 cut(s)	223, 345, 456, 581, 597
BspT107I	GGYRCC	3 cut(s)	221, 343, 454
BspTI	CTTAAG	1 cut(s)	172
BspTNI	GGTCTC	2 cut(s)	490, 680
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	3 cut(s)	114, 399, 664
BssT1I	CCWWGG	2 cut(s)	114, 664
Bst2UI	CCWGG	2 cut(s)	362, 493
Bst4CI	ACNGT	2 cut(s)	105, 338
BstAFI	CTTAAG	1 cut(s)	172
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	522, 584
BstDEI	CTNAG	2 cut(s)	356, 469
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	100, 551
BstMAI	GTCTC	3 cut(s)	40, 490, 680
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstNI	CCWGG	2 cut(s)	362, 493
BstSCI	CCNGG	3 cut(s)	360, 399, 491
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	4 cut(s)	176, 628, 631, 688
BstV2I	GAAGAC	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	325, 419, 582
BtgI	CCRYGG	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	100, 551
BtsI	GCAGTG	1 cut(s)	694
BtsIMutI	CAGTG	1 cut(s)	694
Cac8I	GCNNGC	2 cut(s)	522, 584
CciI	TCATGA	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	580, 596
Csp6I	GTAC	3 cut(s)	82, 344, 731
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	3 cut(s)	75, 115, 386
CviQI	GTAC	3 cut(s)	82, 344, 731
DdeI	CTNAG	2 cut(s)	356, 469
DraI	TTTAAA	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	114, 664
Eco31I	GGTCTC	2 cut(s)	490, 680
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	535
EcoO109I	RGGNCCY	2 cut(s)	580, 596
EcoRII	CCWGG	2 cut(s)	360, 491
EcoT14I	CCWWGG	2 cut(s)	114, 664
ErhI	CCWWGG	2 cut(s)	114, 664
FaeI	CATG	3 cut(s)	78, 118, 389
FatI	CATG	3 cut(s)	74, 114, 385
FauNDI	CATATG	1 cut(s)	575
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	165, 642, 645, 702
FokI	GGATG	2 cut(s)	107, 538
Fsp4HI	GCNGC	4 cut(s)	165, 642, 645, 702
FspBI	CTAG	2 cut(s)	410, 566
GluI	GCNGC	4 cut(s)	165, 642, 645, 702
GsuI	CTGGAG	1 cut(s)	514
HaeIII	GGCC	3 cut(s)	325, 419, 582
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	3 cut(s)	78, 118, 389
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	3 cut(s)	132, 205, 571
Hpy188I	TCNGA	2 cut(s)	243, 376
Hpy188III	TCNNGA	2 cut(s)	386, 537
Hpy8I	GTNNAC	3 cut(s)	132, 205, 571
HpyAV	CCTTC	6 cut(s)	286, 312, 357, 381, 430, 586
HpyCH4III	ACNGT	2 cut(s)	105, 338
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	6 cut(s)	132, 215, 586, 635, 704, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	2 cut(s)	356, 469
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	78, 118, 389
KpnI	GGTACC	1 cut(s)	347
LmnI	GCTCC	1 cut(s)	698
Lsp1109I	GCAGC	4 cut(s)	176, 628, 631, 688
MaeI	CTAG	2 cut(s)	410, 566
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	118
MboII	GAAGA	4 cut(s)	187, 221, 401, 765
MfeI	CAATTG	3 cut(s)	216, 630, 636
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	6 cut(s)	216, 444, 542, 630, 636, 760
MmeI	TCCRAC	1 cut(s)	676
MnlI	CCTC	6 cut(s)	52, 72, 170, 249, 282, 302
MseI	TTAA	5 cut(s)	11, 146, 173, 297, 763
MslI	CAYNNNNRTG	3 cut(s)	93, 113, 460
MspCI	CTTAAG	1 cut(s)	172
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	3 cut(s)	362, 401, 493
MunI	CAATTG	3 cut(s)	216, 630, 636
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	2 cut(s)	362, 493
MwoI	GCNNNNNNNGC	1 cut(s)	641
NciI	CCSGG	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	575
NlaIII	CATG	3 cut(s)	78, 118, 389
NlaIV	GGNNCC	5 cut(s)	223, 345, 456, 581, 597
PagI	TCATGA	1 cut(s)	385
PctI	GAATGC	1 cut(s)	561
PkrI	GCNGC	4 cut(s)	166, 643, 646, 703
PpuMI	RGGWCCY	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	596
Psp6I	CCWGG	2 cut(s)	360, 491
PspGI	CCWGG	2 cut(s)	360, 491
PspN4I	GGNNCC	5 cut(s)	223, 345, 456, 581, 597
PspPI	GGNCC	2 cut(s)	580, 596
PspPPI	RGGWCCY	1 cut(s)	596
RsaI	GTAC	3 cut(s)	83, 345, 732
RsaNI	GTAC	3 cut(s)	82, 344, 731
RseI	CAYNNNNRTG	3 cut(s)	93, 113, 460
SaqAI	TTAA	5 cut(s)	11, 146, 173, 297, 763
SatI	GCNGC	4 cut(s)	165, 642, 645, 702
Sau96I	GGNCC	2 cut(s)	580, 596
ScaI	AGTACT	1 cut(s)	732
ScrFI	CCNGG	3 cut(s)	362, 401, 493
SduI	GDGCHC	1 cut(s)	134
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	3 cut(s)	93, 113, 460
SmlI	CTYRAG	2 cut(s)	172, 484
SmoI	CTYRAG	2 cut(s)	172, 484
Sse9I	AATT	6 cut(s)	216, 444, 542, 630, 636, 760
SspMI	CTAG	2 cut(s)	410, 566
StyD4I	CCNGG	3 cut(s)	360, 399, 491
StyI	CCWWGG	2 cut(s)	114, 664
TaaI	ACNGT	2 cut(s)	105, 338
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	611
TasI	AATT	6 cut(s)	216, 444, 542, 630, 636, 760
TatI	WGTACW	1 cut(s)	730
Tru1I	TTAA	5 cut(s)	11, 146, 173, 297, 763
Tru9I	TTAA	5 cut(s)	11, 146, 173, 297, 763
TscAI	CASTG	1 cut(s)	694
TseI	GCWGC	4 cut(s)	164, 641, 644, 701
TspDTI	ATGAA	5 cut(s)	97, 187, 238, 402, 540
TspGWI	ACGGA	2 cut(s)	504, 544
TspRI	CASTG	1 cut(s)	694
Vha464I	CTTAAG	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	1 cut(s)	542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	2 cut(s)	410, 566
ZrmI	AGTACT	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.