Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

85585912 .. 85587894

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG634100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCAGGGAGGTCCTGTTACAGAGATGTGTTGCCCTTTACAGCCATGGTTACAGTGGAGAGCACCAATGTTGGCTTAAACATCTTATTCAAGTCAGCAACCTCAAAAGGGTTGAGTAACTATGTCTTCATTGTCTACTCTTATGCACTTGCCACTGTTCTTCTTCTCCCTCTTCCTTTCATTTTTCCCAGAACAAGGCTTCCTCCATTCAAGCTCTCTCTTCTCGTTAAAGCTTTCCTACTTGGATTGATCGGGTTTGTGGCAAATTTATGTGCATATAAAGGTATAGATTACGGTTCACCAACTCTTGCTTCAGCTATGAGCAACCTCTCTCCGGCTTTTACATTCATACTTGCCGTCATCTTCAGAATGGAAAGGCTGAGTGTGAGAAGCATCAGCACCCAAGCCAAAGTCATGGGTACTTTAGTGTCAATATCAGGTGCTCTAGTGGTGGTTCTCTATAGAGGCCCAACAGTTCTATCCAATACATCAGAAAAGGATTGGGTAAAAAGTGGCATATTACTTACTGTTGGGTACCTTCTGTTCTCTACCTGGTCAATCCTTCAGACACATATCATGAAGACATACCCGGCTGAGCTAGTTTTGGCACTGTTATACAACTTGTTTGGAACAATTATATCAGCACCAGTGTGTGTACTAATAGCTGAAACAAAGTTAAGTGCCTGGAGACTAAGGCCTGGGGTAGCATTGGCTGCCATTATATACTCGGGGCTCTTTAGTTCAGCCTTGAGCACCCTTGTTAAGACATGGAGCCTAAACTTGAAAGGTCCTGTGTATGTATCAATCTTCAGCCCAATGTCAATTGTCATTGCTGCTGCATCCAGTGTCATATTCCTCGGTGATAATCTCTTTCTCGGCAGTGTTGTTGGAGCTGTAATGATATGCATAGGGTTTTATGGGGTAATATGGGGACAGGCAAAGGAAGAAGAAATGAAAGATCAAGACTATGGCTTTGATAGCTTGAGAGGGTTACATGGTGGTAAGGCACCATTATTGGAAACCTACAAAGTTGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

346

Amino Acids

37.5

Weight (kDa)

9.39

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	25 - 152	7.5e-12	EamA-like transporter family
EamA	PF00892	173 - 309	4.4e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	534
AccB1I	GGYRCC	2 cut(s)	534, 1006
AccI	GTMKAC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	4 cut(s)	297, 349, 548, 793
AfaI	GTAC	3 cut(s)	421, 536, 657
AfiI	CCNNNNNNNGG	3 cut(s)	108, 195, 334
AgsI	TTSAA	4 cut(s)	91, 211, 784, 1034
AjnI	CCWGG	3 cut(s)	551, 683, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AleI	CACNNNNGTG	1 cut(s)	649
AloI	GAACNNNNNNTCC	2 cut(s)	184, 216
AluBI	AGCT	7 cut(s)	214, 233, 317, 598, 665, 893, 981
AluI	AGCT	7 cut(s)	214, 233, 317, 598, 665, 893, 981
Alw21I	GWGCWC	3 cut(s)	65, 445, 755
Alw26I	GTCTC	1 cut(s)	682
Ama87I	CYCGRG	1 cut(s)	727
AoxI	GGCC	2 cut(s)	466, 695
ApeKI	GCWGC	3 cut(s)	713, 833, 836
ApoI	RAATTY	1 cut(s)	265
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
Asp718I	GGTACC	1 cut(s)	534
AspS9I	GGNCC	3 cut(s)	12, 467, 788
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	291, 872
AvaI	CYCGRG	1 cut(s)	727
AvaII	GGWCC	2 cut(s)	12, 788
BaeI	ACNNNNGTAYC	2 cut(s)	411, 444
BanI	GGYRCC	2 cut(s)	534, 1006
BanII	GRGCYC	1 cut(s)	735
BbsI	GAAGAC	2 cut(s)	118, 587
Bbv12I	GWGCWC	3 cut(s)	65, 445, 755
BbvI	GCAGC	3 cut(s)	700, 820, 823
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	3 cut(s)	553, 685, 699
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	682
BfaI	CTAG	2 cut(s)	446, 599
BfmI	CTRYAG	1 cut(s)	460
BisI	GCNGC	3 cut(s)	714, 834, 837
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	3 cut(s)	715, 835, 838
Bme1390I	CCNGG	4 cut(s)	553, 590, 685, 699
Bme18I	GGWCC	2 cut(s)	12, 788
BmeT110I	CYCGRG	1 cut(s)	727
BmgT120I	GGNCC	3 cut(s)	12, 467, 788
BmiI	GGNNCC	3 cut(s)	536, 773, 1008
BmrFI	CCNGG	4 cut(s)	553, 590, 685, 699
BmsI	GCATC	2 cut(s)	402, 848
BpiI	GAAGAC	2 cut(s)	118, 587
BpmI	CTGGAG	1 cut(s)	706
Bpu1102I	GCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	2 cut(s)	769, 1003
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	3 cut(s)	45, 698, 856
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 195, 334
Bse1I	ACTGG	2 cut(s)	647, 843
Bse3DI	GCAATG	1 cut(s)	828
BseBI	CCWGG	3 cut(s)	553, 685, 699
BseDI	CCNNGG	3 cut(s)	45, 698, 856
BseGI	GGATG	1 cut(s)	839
BseLI	CCNNNNNNNGG	3 cut(s)	108, 195, 334
BseMI	GCAATG	1 cut(s)	828
BseMII	CTCAG	2 cut(s)	371, 585
BseNI	ACTGG	2 cut(s)	647, 843
BseXI	GCAGC	3 cut(s)	700, 820, 823
BshFI	GGCC	2 cut(s)	468, 697
BshNI	GGYRCC	2 cut(s)	534, 1006
BsiHKAI	GWGCWC	3 cut(s)	65, 445, 755
BsiHKCI	CYCGRG	1 cut(s)	727
BsiSI	CCGG	2 cut(s)	335, 590
BslFI	GGGAC	1 cut(s)	945
BslI	CCNNNNNNNGG	3 cut(s)	108, 195, 334
BsmAI	GTCTC	1 cut(s)	682
BsmFI	GGGAC	1 cut(s)	945
BsnI	GGCC	2 cut(s)	468, 697
BsoBI	CYCGRG	1 cut(s)	727
Bsp1286I	GDGCHC	4 cut(s)	65, 445, 735, 755
Bsp143I	GATC	2 cut(s)	249, 958
Bsp1720I	GCTNAGC	1 cut(s)	594
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	2 cut(s)	468, 697
BspCNI	CTCAG	2 cut(s)	372, 586
BspHI	TCATGA	1 cut(s)	576
BspLI	GGNNCC	3 cut(s)	536, 773, 1008
BspT107I	GGYRCC	2 cut(s)	534, 1006
BsrDI	GCAATG	1 cut(s)	828
BsrI	ACTGG	2 cut(s)	647, 843
BssECI	CCNNGG	3 cut(s)	45, 698, 856
BssMI	GATC	2 cut(s)	249, 958
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	553, 685, 699
Bst4CI	ACNGT	6 cut(s)	55, 157, 296, 475, 529, 612
Bst6I	CTCTTC	2 cut(s)	177, 225
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstDEI	CTNAG	3 cut(s)	380, 594, 692
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	839
BstKTI	GATC	2 cut(s)	252, 961
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	2 cut(s)	249, 958
BstMWI	GCNNNNNNNGC	2 cut(s)	713, 978
BstNI	CCWGG	3 cut(s)	553, 685, 699
BstSCI	CCNGG	4 cut(s)	551, 588, 683, 697
BstSFI	CTRYAG	1 cut(s)	460
BstV1I	GCAGC	3 cut(s)	700, 820, 823
BstV2I	GAAGAC	2 cut(s)	118, 587
BstXI	CCANNNNNNTGG	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	468, 697
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	839
BtsI	GCAGTG	1 cut(s)	886
BtsIMutI	CAGTG	6 cut(s)	60, 153, 608, 654, 850, 886
CciI	TCATGA	1 cut(s)	576
Cfr13I	GGNCC	3 cut(s)	12, 467, 788
CsiI	ACCWGGT	1 cut(s)	551
Csp6I	GTAC	3 cut(s)	420, 535, 656
CviAII	CATG	5 cut(s)	46, 415, 577, 768, 995
CviQI	GTAC	3 cut(s)	420, 535, 656
DdeI	CTNAG	3 cut(s)	380, 594, 692
DpnI	GATC	2 cut(s)	251, 960
DpnII	GATC	2 cut(s)	249, 958
Eam1104I	CTCTTC	2 cut(s)	177, 225
EarI	CTCTTC	2 cut(s)	177, 225
Eco130I	CCWWGG	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	697
Eco24I	GRGCYC	1 cut(s)	735
Eco47I	GGWCC	2 cut(s)	12, 788
Eco57I	CTGAAG	4 cut(s)	297, 349, 548, 793
Eco88I	CYCGRG	1 cut(s)	727
EcoO109I	RGGNCCY	2 cut(s)	12, 788
EcoRII	CCWGG	3 cut(s)	551, 683, 697
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	908
EcoT38I	GRGCYC	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	5 cut(s)	49, 418, 580, 771, 998
FaqI	GGGAC	1 cut(s)	945
FatI	CATG	5 cut(s)	45, 414, 576, 767, 994
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	714, 834, 837
FokI	GGATG	1 cut(s)	826
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	3 cut(s)	714, 834, 837
FspBI	CTAG	2 cut(s)	446, 599
GluI	GCNGC	3 cut(s)	714, 834, 837
GsuI	CTGGAG	1 cut(s)	706
HaeIII	GGCC	2 cut(s)	468, 697
HapII	CCGG	2 cut(s)	335, 590
Hin1II	CATG	5 cut(s)	49, 418, 580, 771, 998
HindIII	AAGCTT	1 cut(s)	231
HpaII	CCGG	2 cut(s)	335, 590
HphI	GGTGA	2 cut(s)	291, 872
Hpy166II	GTNNAC	3 cut(s)	136, 299, 656
Hpy188I	TCNGA	3 cut(s)	368, 493, 567
Hpy188III	TCNNGA	2 cut(s)	577, 962
Hpy8I	GTNNAC	3 cut(s)	136, 299, 656
HpyAV	CCTTC	2 cut(s)	548, 572
HpyCH4III	ACNGT	6 cut(s)	55, 157, 296, 475, 529, 612
HpyCH4V	TGCA	4 cut(s)	146, 275, 839, 906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	713, 978
HpyF3I	CTNAG	3 cut(s)	380, 594, 692
Hsp92II	CATG	5 cut(s)	49, 418, 580, 771, 998
KpnI	GGTACC	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	249, 958
LmnI	GCTCC	2 cut(s)	771, 890
Lsp1109I	GCAGC	3 cut(s)	700, 820, 823
LweI	GCATC	2 cut(s)	402, 848
MabI	ACCWGGT	1 cut(s)	551
MaeI	CTAG	2 cut(s)	446, 599
MaeIII	GTNAC	4 cut(s)	17, 49, 116, 990
MalI	GATC	2 cut(s)	251, 960
MboI	GATC	2 cut(s)	249, 958
MfeI	CAATTG	1 cut(s)	822
MhlI	GDGCHC	4 cut(s)	65, 445, 735, 755
MluCI	AATT	3 cut(s)	265, 633, 822
MmeI	TCCRAC	1 cut(s)	868
MnlI	CCTC	8 cut(s)	3, 112, 180, 213, 338, 458, 866, 980
Mph1103I	ATGCAT	1 cut(s)	908
MseI	TTAA	4 cut(s)	77, 228, 677, 762
MslI	CAYNNNNRTG	1 cut(s)	649
MspI	CCGG	2 cut(s)	335, 590
MspR9I	CCNGG	4 cut(s)	553, 590, 685, 699
MunI	CAATTG	1 cut(s)	822
MvaI	CCWGG	3 cut(s)	553, 685, 699
MwoI	GCNNNNNNNGC	2 cut(s)	713, 978
NciI	CCSGG	1 cut(s)	590
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	249, 958
NlaIII	CATG	5 cut(s)	49, 418, 580, 771, 998
NlaIV	GGNNCC	3 cut(s)	536, 773, 1008
NmeAIII	GCCGAG	1 cut(s)	855
NsiI	ATGCAT	1 cut(s)	908
OliI	CACNNNNGTG	1 cut(s)	649
PagI	TCATGA	1 cut(s)	576
PceI	AGGCCT	1 cut(s)	697
PkrI	GCNGC	3 cut(s)	715, 835, 838
PpuMI	RGGWCCY	2 cut(s)	12, 788
Psp5II	RGGWCCY	2 cut(s)	12, 788
Psp6I	CCWGG	3 cut(s)	551, 683, 697
PspGI	CCWGG	3 cut(s)	551, 683, 697
PspN4I	GGNNCC	3 cut(s)	536, 773, 1008
PspPI	GGNCC	3 cut(s)	12, 467, 788
PspPPI	RGGWCCY	2 cut(s)	12, 788
PsrI	GAACNNNNNNTAC	2 cut(s)	527, 559
RsaI	GTAC	3 cut(s)	421, 536, 657
RsaNI	GTAC	3 cut(s)	420, 535, 656
RseI	CAYNNNNRTG	1 cut(s)	649
SaqAI	TTAA	4 cut(s)	77, 228, 677, 762
SatI	GCNGC	3 cut(s)	714, 834, 837
Sau3AI	GATC	2 cut(s)	249, 958
Sau96I	GGNCC	3 cut(s)	12, 467, 788
ScrFI	CCNGG	4 cut(s)	553, 590, 685, 699
SduI	GDGCHC	4 cut(s)	65, 445, 735, 755
SexAI	ACCWGGT	1 cut(s)	551
SfaNI	GCATC	2 cut(s)	402, 848
SfcI	CTRYAG	1 cut(s)	460
SinI	GGWCC	2 cut(s)	12, 788
SmiMI	CAYNNNNRTG	1 cut(s)	649
SmlI	CTYRAG	2 cut(s)	748, 982
SmoI	CTYRAG	2 cut(s)	748, 982
Sse9I	AATT	3 cut(s)	265, 633, 822
SseBI	AGGCCT	1 cut(s)	697
SspMI	CTAG	2 cut(s)	446, 599
StuI	AGGCCT	1 cut(s)	697
StyD4I	CCNGG	4 cut(s)	551, 588, 683, 697
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	6 cut(s)	55, 157, 296, 475, 529, 612
TasI	AATT	3 cut(s)	265, 633, 822
TatI	WGTACW	1 cut(s)	655
Tru1I	TTAA	4 cut(s)	77, 228, 677, 762
Tru9I	TTAA	4 cut(s)	77, 228, 677, 762
TscAI	CASTG	6 cut(s)	60, 160, 615, 654, 850, 886
TseI	GCWGC	3 cut(s)	713, 833, 836
TspDTI	ATGAA	5 cut(s)	118, 169, 337, 593, 968
TspRI	CASTG	6 cut(s)	60, 160, 615, 654, 850, 886
VpaK11BI	GGWCC	2 cut(s)	12, 788
XapI	RAATTY	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	446, 599
Zsp2I	ATGCAT	1 cut(s)	908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.