Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Reverse (-)

37513968 .. 37515360

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50391.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGATGGATGTCTGGTCACAACAGTGTTCTGCCATTCACCACCATGATTATAGTGGAGTGCGTCAACTTGGGGTCAGGTGTCTTCTTTAAGGCAGCTGCCCCAAGAGGGTTGAGCTACTATGTTCTCATTGTTTACTCTCATGCAATTGCCATCTTTCGCAGAACCGGGCTTCCACCATTCAAGCTCTCTCTCATATTTAACCTCTTCCTCCTCAGGATAATCGGGTTTTTGGGTAGTTTATGTGGATATAAAGGTATAGAATACAGTTCACCGACTCTTGCATGCTTCAGCTATTGGGAACCTATCTCCAGCTTTTATCTTCATACTTGCCATAACCTTCAGTGTTTACTACTCATTTTGGTCCATAAAACAAGGACACATACACGTTTTACAAAGTCAATTAATATTCAGCTTCTAGTTATGGAAAAACTGAATTGGAGAAGCAGAAGCACTCAAGCCAAAGTGATGGGTACTCTAGTAGCAATATCAGGTGCAATCGTAGTAGTGCTTTATAAAGGCCCAACAATTCTATCACCTACAACTCCATCCTTTCTCGGAATTTCAGAAACGGAGTGGGTAAGCAGTGGCCTATTACTTACTCTTGGATACCTTCTCTTCTCTGTGTGGGCTATCCTGCAGACCCATATCATGAAGACATACCCAGATGAGCTAGTTCTCACCTTCCTATACAACTTGCGTGGGACAATTGTATCAACACCAACATGTATCATAGCGGAAAAAAACTTGATTGCCTGGAAGCTAACATCCGGTATACCATTGCTTGCCACACTATATACTCAGACTATCCATTCATGTGTTAGCTTGATATACAATGTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

282

Amino Acids

31.31

Weight (kDa)

9.41

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AccI	GTMKAC	1 cut(s)	775
AciI	CCGC	1 cut(s)	737
AcsI	RAATTY	1 cut(s)	561
AcuI	CTGAAG	2 cut(s)	274, 326
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflIII	ACRYGT	2 cut(s)	386, 725
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	755
AleI	CACNNNNGTG	1 cut(s)	24
AloI	GAACNNNNNNTCC	2 cut(s)	157, 189
AluBI	AGCT	9 cut(s)	98, 117, 187, 294, 315, 415, 673, 763, 825
AluI	AGCT	9 cut(s)	98, 117, 187, 294, 315, 415, 673, 763, 825
AoxI	GGCC	2 cut(s)	520, 589
ApeKI	GCWGC	2 cut(s)	95, 98
ApoI	RAATTY	1 cut(s)	561
AseI	ATTAAT	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	364, 521
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	4 cut(s)	31, 264, 528, 673
AvaII	GGWCC	1 cut(s)	364
AxyI	CCTNAGG	1 cut(s)	215
BaeI	ACNNNNGTAYC	4 cut(s)	465, 498, 696, 729
BbsI	GAAGAC	2 cut(s)	76, 662
BbvI	GCAGC	2 cut(s)	85, 107
BccI	CCATC	3 cut(s)	161, 463, 556
BciT130I	CCWGG	1 cut(s)	757
BciVI	GTATCC	1 cut(s)	602
BcnI	CCSGG	1 cut(s)	169
BfaI	CTAG	4 cut(s)	419, 479, 674, 844
BfmI	CTRYAG	1 cut(s)	638
BfuI	GTATCC	1 cut(s)	602
BisI	GCNGC	2 cut(s)	96, 99
BlsI	GCNGC	2 cut(s)	97, 100
Bme1390I	CCNGG	2 cut(s)	169, 757
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	2 cut(s)	364, 521
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	2 cut(s)	169, 757
BpiI	GAAGAC	2 cut(s)	76, 662
BpmI	CTGGAG	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	441
BpuMI	CCSGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	770
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse21I	CCTNAGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	779
BseBI	CCWGG	1 cut(s)	757
BseGI	GGATG	4 cut(s)	11, 15, 548, 767
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	779
BseMII	CTCAG	2 cut(s)	229, 815
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	85, 107
BshFI	GGCC	2 cut(s)	522, 591
BsiSI	CCGG	2 cut(s)	168, 771
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	718
BsnI	GGCC	2 cut(s)	522, 591
BspACI	CCGC	1 cut(s)	737
BspANI	GGCC	2 cut(s)	522, 591
BspCNI	CTCAG	2 cut(s)	228, 814
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	642
BsrDI	GCAATG	1 cut(s)	779
BssNAI	GTATAC	1 cut(s)	776
Bst1107I	GTATAC	1 cut(s)	776
Bst2UI	CCWGG	1 cut(s)	757
Bst4CI	ACNGT	2 cut(s)	26, 269
Bst6I	CTCTTC	2 cut(s)	212, 623
BstC8I	GCNNGC	2 cut(s)	286, 786
BstDEI	CTNAG	2 cut(s)	215, 801
BstF5I	GGATG	4 cut(s)	11, 15, 548, 767
BstNI	CCWGG	1 cut(s)	757
BstNSI	RCATGY	2 cut(s)	288, 729
BstSCI	CCNGG	2 cut(s)	167, 755
BstSFI	CTRYAG	1 cut(s)	638
BstV1I	GCAGC	2 cut(s)	85, 107
BstV2I	GAAGAC	2 cut(s)	76, 662
BstXI	CCANNNNNNTGG	1 cut(s)	469
BstZ17I	GTATAC	1 cut(s)	776
Bsu36I	CCTNAGG	1 cut(s)	215
BsuI	GTATCC	1 cut(s)	602
BsuRI	GGCC	2 cut(s)	522, 591
BtsCI	GGATG	4 cut(s)	11, 15, 548, 767
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	3 cut(s)	31, 350, 592
Cac8I	GCNNGC	2 cut(s)	286, 786
CciI	TCATGA	1 cut(s)	651
Cfr13I	GGNCC	2 cut(s)	364, 521
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	474
CspCI	CAANNNNNGTGG	2 cut(s)	682, 717
CviAII	CATG	6 cut(s)	46, 143, 285, 652, 726, 816
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	2 cut(s)	215, 801
Eam1104I	CTCTTC	2 cut(s)	212, 623
EarI	CTCTTC	2 cut(s)	212, 623
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	2 cut(s)	274, 326
Eco81I	CCTNAGG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	755
FaeI	CATG	6 cut(s)	49, 146, 288, 655, 729, 819
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	6 cut(s)	45, 142, 284, 651, 725, 815
FblI	GTMKAC	1 cut(s)	775
Fnu4HI	GCNGC	2 cut(s)	96, 99
FokI	GGATG	4 cut(s)	18, 22, 535, 754
Fsp4HI	GCNGC	2 cut(s)	96, 99
FspBI	CTAG	4 cut(s)	419, 479, 674, 844
GluI	GCNGC	2 cut(s)	96, 99
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	522, 591
HapII	CCGG	2 cut(s)	168, 771
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	6 cut(s)	49, 146, 288, 655, 729, 819
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	2 cut(s)	168, 771
HphI	GGTGA	4 cut(s)	31, 264, 528, 673
Hpy166II	GTNNAC	5 cut(s)	67, 136, 272, 350, 776
Hpy188I	TCNGA	3 cut(s)	560, 568, 804
Hpy188III	TCNNGA	2 cut(s)	217, 652
Hpy8I	GTNNAC	5 cut(s)	67, 136, 272, 350, 776
HpyAV	CCTTC	3 cut(s)	350, 623, 694
HpyCH4III	ACNGT	2 cut(s)	26, 269
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	4 cut(s)	146, 284, 497, 640
HpyF3I	CTNAG	2 cut(s)	215, 801
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	6 cut(s)	49, 146, 288, 655, 729, 819
Lsp1109I	GCAGC	2 cut(s)	85, 107
MaeI	CTAG	4 cut(s)	419, 479, 674, 844
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	17
MboII	GAAGA	5 cut(s)	76, 199, 314, 610, 667
MfeI	CAATTG	2 cut(s)	147, 708
MluCI	AATT	6 cut(s)	147, 402, 436, 528, 561, 708
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	4 cut(s)	101, 215, 221, 224
MseI	TTAA	3 cut(s)	90, 201, 405
MslI	CAYNNNNRTG	4 cut(s)	24, 44, 724, 816
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	168, 771
MspR9I	CCNGG	2 cut(s)	169, 757
MunI	CAATTG	2 cut(s)	147, 708
MvaI	CCWGG	1 cut(s)	757
NciI	CCSGG	1 cut(s)	169
NlaIII	CATG	6 cut(s)	49, 146, 288, 655, 729, 819
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	2 cut(s)	288, 729
OliI	CACNNNNGTG	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	288
PagI	TCATGA	1 cut(s)	651
PciI	ACATGT	1 cut(s)	725
PkrI	GCNGC	2 cut(s)	97, 100
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PscI	ACATGT	1 cut(s)	725
PshBI	ATTAAT	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	755
PspGI	CCWGG	1 cut(s)	755
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	364, 521
PstI	CTGCAG	1 cut(s)	642
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
RseI	CAYNNNNRTG	4 cut(s)	24, 44, 724, 816
SaqAI	TTAA	3 cut(s)	90, 201, 405
SatI	GCNGC	2 cut(s)	96, 99
Sau96I	GGNCC	2 cut(s)	364, 521
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	169, 757
SfcI	CTRYAG	1 cut(s)	638
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	4 cut(s)	24, 44, 724, 816
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
SphI	GCATGC	1 cut(s)	288
Sse9I	AATT	6 cut(s)	147, 402, 436, 528, 561, 708
SsiI	CCGC	1 cut(s)	737
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	4 cut(s)	419, 479, 674, 844
StyD4I	CCNGG	2 cut(s)	167, 755
TaaI	ACNGT	2 cut(s)	26, 269
TaiI	ACGT	1 cut(s)	391
TasI	AATT	6 cut(s)	147, 402, 436, 528, 561, 708
Tru1I	TTAA	3 cut(s)	90, 201, 405
Tru9I	TTAA	3 cut(s)	90, 201, 405
TscAI	CASTG	3 cut(s)	31, 350, 592
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	2 cut(s)	95, 98
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	3 cut(s)	314, 668, 804
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	3 cut(s)	31, 350, 592
VpaK11BI	GGWCC	1 cut(s)	364
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	1 cut(s)	561
XceI	RCATGY	2 cut(s)	288, 729
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	775
XspI	CTAG	4 cut(s)	419, 479, 674, 844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.