Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003787.1

Orthogroup ID

OG0000920

Physical Location & Seq

Genomic Coordinates Forward (+)

30382 .. 32315

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003787.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atggttacagtggagatcaccaatgttggcttaaacatcttattcaagtcagcaacctcaaaagggttgagtaactatgtcttcattgtctactcttacgcatttgccactgttcttcttctccctcttcctttcatttttcccagcagaacaaggcttcctccattcaagctctctcttctcgttaaagctttcctacttggattgatcgggtttgtggcaaatttatgtgcatataaaggtatagattacggttcaccaactcttgcttcagctatgagcaacctctctccggcttttacattcatacttgctgtcatcttcagaatggaaaggctgagtgtgagaagcatcagcacccaagccaaagtcatgggtactttagtgtcaatatcaggtgctctagtggtggttctctatagaggcccaatagttctatcctatacatcagaaaaggattgggtaaaaagtggcatattacttactgttgggtaccttctgttctctacctggtcaatccttcagacacatatcatgaagacatacccggctgagctagttttggcactgttatacaacttgtttggaacaattgtatcagcaccagtgtgtgtactaatagctgaaacaaagttaagtgcctggagactaaggcctggggtagcattggctgccattatatactcggggctctttagtacagccttgagcacccttgttaagacatggagcctaaacttgaaaggtcctgtgtatgtatcaatcttcagtccattgtcaattgtcattgctgctgcatccagtgtcatattcctcggtgataatctctttctcggcagtgttgttggagctgtaatgataagcatagggttttatggggtaatatggggacaggcaaaggaagaagaaatgaaagatcaagactatggctttgatagcttgagaggattacatagtggtaaggcaccattattggaaacctacaaagttgaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

332

Amino Acids

36.03

Weight (kDa)

9.43

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15540 AT4G15540 AT5G40230 AT5G40240 AT5G40240 AT5G40240
fragaria_vesca	FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50361 FvH4_6g50391
malus_domestica	MD09G1036800.v1.1
prunus_persica	Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1 Prupe.3G280800_v2.0.a1
pyrus_communis	pycom111g02960
rosa_chinensis	RchiOBHm_Chr2g0170711 RchiOBHm_Chr2g0170721 RchiOBHm_Chr2g0170741 RchiOBHm_Chr2g0170751 RchiOBHm_Chr2g0170771 RchiOBHm_Chr2g0170791
rosa_laevigata	RLG00000021977 RLG00000021978 RLG00000021979 RLG00000021980
rosa_multiflora	Rmu_co8399817.1_g000001 Rmu_sc0003787.1_g000001 Rmu_sc0003787.1_g000006 Rmu_sc0030505.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042170 Rroxscaffold_2G00081070 Rroxscaffold_2G00081080 Rroxscaffold_2G00081090 Rroxscaffold_2G00081100 Rroxscaffold_2G00096620 Rroxscaffold_6G00402650
rosa_rugosa	Rorug02G0550600 Rorug02G0550700 Rorug02G0550800 Rorug02G0550900 Rorug02G0551000 Rorug02G0551100 Rorug02G0551200
rosa_samantha	Rh2AG623600 Rh2AG623700 Rh2AG623800 Rh2BG634100 Rh2BG634200 Rh2BG634300 Rh2BG634400 Rh2BG634500 Rh2BG634600 Rh2CG603400 Rh2DG646600
rosa_wichuraiana	Rw2G051650 Rw2G051660 Rw2G051670 Rw2G051680 Rw2G051690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	492
AccB1I	GGYRCC	2 cut(s)	492, 964
AccI	GTMKAC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	4 cut(s)	255, 307, 506, 751
AfaI	GTAC	4 cut(s)	379, 494, 615, 700
AfiI	CCNNNNNNNGG	2 cut(s)	63, 292
AgsI	TTSAA	4 cut(s)	46, 169, 742, 992
AjnI	CCWGG	3 cut(s)	509, 641, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	253, 285
AleI	CACNNNNGTG	1 cut(s)	607
AloI	GAACNNNNNNTCC	2 cut(s)	142, 174
AluBI	AGCT	7 cut(s)	172, 191, 275, 556, 623, 851, 939
AluI	AGCT	7 cut(s)	172, 191, 275, 556, 623, 851, 939
Alw21I	GWGCWC	2 cut(s)	403, 713
Alw26I	GTCTC	1 cut(s)	640
Ama87I	CYCGRG	1 cut(s)	685
AoxI	GGCC	2 cut(s)	424, 653
ApeKI	GCWGC	3 cut(s)	671, 791, 794
ApoI	RAATTY	1 cut(s)	223
ArsI	GACNNNNNNTTYG	2 cut(s)	914, 946
Asp718I	GGTACC	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	425, 746
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	3 cut(s)	10, 249, 830
AvaI	CYCGRG	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	746
BaeI	ACNNNNGTAYC	4 cut(s)	369, 402, 579, 612
BanI	GGYRCC	2 cut(s)	492, 964
BanII	GRGCYC	1 cut(s)	693
BbsI	GAAGAC	2 cut(s)	73, 545
Bbv12I	GWGCWC	2 cut(s)	403, 713
BbvI	GCAGC	3 cut(s)	658, 778, 781
BciT130I	CCWGG	3 cut(s)	511, 643, 657
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	2 cut(s)	404, 557
BfmI	CTRYAG	1 cut(s)	418
BisI	GCNGC	3 cut(s)	672, 792, 795
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	3 cut(s)	673, 793, 796
Bme1390I	CCNGG	4 cut(s)	511, 548, 643, 657
Bme18I	GGWCC	1 cut(s)	746
BmeT110I	CYCGRG	1 cut(s)	685
BmgT120I	GGNCC	2 cut(s)	425, 746
BmiI	GGNNCC	3 cut(s)	494, 731, 966
BmrFI	CCNGG	4 cut(s)	511, 548, 643, 657
BmsI	GCATC	2 cut(s)	360, 806
BpiI	GAAGAC	2 cut(s)	73, 545
BpmI	CTGGAG	1 cut(s)	664
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	727, 961
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	656, 814
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 292
Bse1I	ACTGG	2 cut(s)	605, 801
Bse3DI	GCAATG	1 cut(s)	786
BseBI	CCWGG	3 cut(s)	511, 643, 657
BseDI	CCNNGG	2 cut(s)	656, 814
BseGI	GGATG	1 cut(s)	797
BseLI	CCNNNNNNNGG	2 cut(s)	63, 292
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	2 cut(s)	329, 543
BseNI	ACTGG	2 cut(s)	605, 801
BseXI	GCAGC	3 cut(s)	658, 778, 781
BseYI	CCCAGC	1 cut(s)	143
BshFI	GGCC	2 cut(s)	426, 655
BshNI	GGYRCC	2 cut(s)	492, 964
BsiHKAI	GWGCWC	2 cut(s)	403, 713
BsiHKCI	CYCGRG	1 cut(s)	685
BsiSI	CCGG	2 cut(s)	293, 548
BslFI	GGGAC	1 cut(s)	903
BslI	CCNNNNNNNGG	2 cut(s)	63, 292
BsmAI	GTCTC	1 cut(s)	640
BsmFI	GGGAC	1 cut(s)	903
BsnI	GGCC	2 cut(s)	426, 655
BsoBI	CYCGRG	1 cut(s)	685
Bsp1286I	GDGCHC	3 cut(s)	403, 693, 713
Bsp143I	GATC	3 cut(s)	15, 207, 916
Bsp1720I	GCTNAGC	1 cut(s)	552
BspANI	GGCC	2 cut(s)	426, 655
BspCNI	CTCAG	2 cut(s)	330, 544
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	3 cut(s)	494, 731, 966
BspT107I	GGYRCC	2 cut(s)	492, 964
BsrDI	GCAATG	1 cut(s)	786
BsrI	ACTGG	2 cut(s)	605, 801
BssECI	CCNNGG	2 cut(s)	656, 814
BssMI	GATC	3 cut(s)	15, 207, 916
Bst2UI	CCWGG	3 cut(s)	511, 643, 657
Bst4CI	ACNGT	5 cut(s)	10, 112, 254, 487, 570
Bst6I	CTCTTC	2 cut(s)	132, 183
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstDEI	CTNAG	3 cut(s)	338, 552, 650
BstF5I	GGATG	1 cut(s)	797
BstKTI	GATC	3 cut(s)	18, 210, 919
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	3 cut(s)	15, 207, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	671, 936
BstNI	CCWGG	3 cut(s)	511, 643, 657
BstSCI	CCNGG	4 cut(s)	509, 546, 641, 655
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	3 cut(s)	658, 778, 781
BstV2I	GAAGAC	2 cut(s)	73, 545
BstXI	CCANNNNNNTGG	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	426, 655
BtsCI	GGATG	1 cut(s)	797
BtsI	GCAGTG	1 cut(s)	844
BtsIMutI	CAGTG	6 cut(s)	15, 108, 566, 612, 808, 844
CciI	TCATGA	1 cut(s)	534
Cfr13I	GGNCC	2 cut(s)	425, 746
CsiI	ACCWGGT	1 cut(s)	509
Csp6I	GTAC	4 cut(s)	378, 493, 614, 699
CviAII	CATG	3 cut(s)	373, 535, 726
CviQI	GTAC	4 cut(s)	378, 493, 614, 699
DdeI	CTNAG	3 cut(s)	338, 552, 650
DpnI	GATC	3 cut(s)	17, 209, 918
DpnII	GATC	3 cut(s)	15, 207, 916
Eam1104I	CTCTTC	2 cut(s)	132, 183
EarI	CTCTTC	2 cut(s)	132, 183
Eco147I	AGGCCT	1 cut(s)	655
Eco24I	GRGCYC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	746
Eco57I	CTGAAG	4 cut(s)	255, 307, 506, 751
Eco88I	CYCGRG	1 cut(s)	685
EcoO109I	RGGNCCY	1 cut(s)	746
EcoRII	CCWGG	3 cut(s)	509, 641, 655
EcoT38I	GRGCYC	1 cut(s)	693
FaeI	CATG	3 cut(s)	376, 538, 729
FaqI	GGGAC	1 cut(s)	903
FatI	CATG	3 cut(s)	372, 534, 725
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	672, 792, 795
FokI	GGATG	1 cut(s)	784
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	3 cut(s)	672, 792, 795
FspBI	CTAG	2 cut(s)	404, 557
GluI	GCNGC	3 cut(s)	672, 792, 795
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	664
HaeIII	GGCC	2 cut(s)	426, 655
HapII	CCGG	2 cut(s)	293, 548
Hin1II	CATG	3 cut(s)	376, 538, 729
HindIII	AAGCTT	1 cut(s)	189
HpaII	CCGG	2 cut(s)	293, 548
HphI	GGTGA	3 cut(s)	10, 249, 830
Hpy166II	GTNNAC	3 cut(s)	91, 257, 614
Hpy188I	TCNGA	3 cut(s)	326, 451, 525
Hpy188III	TCNNGA	2 cut(s)	535, 920
Hpy8I	GTNNAC	3 cut(s)	91, 257, 614
HpyAV	CCTTC	2 cut(s)	506, 530
HpyCH4III	ACNGT	5 cut(s)	10, 112, 254, 487, 570
HpyCH4V	TGCA	2 cut(s)	233, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	671, 936
HpyF3I	CTNAG	3 cut(s)	338, 552, 650
Hsp92II	CATG	3 cut(s)	376, 538, 729
KpnI	GGTACC	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	15, 207, 916
LmnI	GCTCC	2 cut(s)	729, 848
Lsp1109I	GCAGC	3 cut(s)	658, 778, 781
LweI	GCATC	2 cut(s)	360, 806
MabI	ACCWGGT	1 cut(s)	509
MaeI	CTAG	2 cut(s)	404, 557
MaeIII	GTNAC	2 cut(s)	4, 71
MalI	GATC	3 cut(s)	17, 209, 918
MboI	GATC	3 cut(s)	15, 207, 916
MfeI	CAATTG	2 cut(s)	591, 780
MhlI	GDGCHC	3 cut(s)	403, 693, 713
MluCI	AATT	3 cut(s)	223, 591, 780
MmeI	TCCRAC	1 cut(s)	826
MnlI	CCTC	7 cut(s)	67, 135, 171, 296, 416, 824, 938
MseI	TTAA	4 cut(s)	32, 186, 635, 720
MslI	CAYNNNNRTG	1 cut(s)	607
MspI	CCGG	2 cut(s)	293, 548
MspR9I	CCNGG	4 cut(s)	511, 548, 643, 657
MunI	CAATTG	2 cut(s)	591, 780
MvaI	CCWGG	3 cut(s)	511, 643, 657
MwoI	GCNNNNNNNGC	2 cut(s)	671, 936
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	3 cut(s)	15, 207, 916
NlaIII	CATG	3 cut(s)	376, 538, 729
NlaIV	GGNNCC	3 cut(s)	494, 731, 966
NmeAIII	GCCGAG	1 cut(s)	813
OliI	CACNNNNGTG	1 cut(s)	607
PagI	TCATGA	1 cut(s)	534
PceI	AGGCCT	1 cut(s)	655
PkrI	GCNGC	3 cut(s)	673, 793, 796
PpuMI	RGGWCCY	1 cut(s)	746
Psp5II	RGGWCCY	1 cut(s)	746
Psp6I	CCWGG	3 cut(s)	509, 641, 655
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	3 cut(s)	509, 641, 655
PspN4I	GGNNCC	3 cut(s)	494, 731, 966
PspPI	GGNCC	2 cut(s)	425, 746
PspPPI	RGGWCCY	1 cut(s)	746
PsrI	GAACNNNNNNTAC	2 cut(s)	485, 517
RsaI	GTAC	4 cut(s)	379, 494, 615, 700
RsaNI	GTAC	4 cut(s)	378, 493, 614, 699
RseI	CAYNNNNRTG	1 cut(s)	607
SaqAI	TTAA	4 cut(s)	32, 186, 635, 720
SatI	GCNGC	3 cut(s)	672, 792, 795
Sau3AI	GATC	3 cut(s)	15, 207, 916
Sau96I	GGNCC	2 cut(s)	425, 746
ScrFI	CCNGG	4 cut(s)	511, 548, 643, 657
SduI	GDGCHC	3 cut(s)	403, 693, 713
SexAI	ACCWGGT	1 cut(s)	509
SfaNI	GCATC	2 cut(s)	360, 806
SfcI	CTRYAG	1 cut(s)	418
SinI	GGWCC	1 cut(s)	746
SmiMI	CAYNNNNRTG	1 cut(s)	607
SmlI	CTYRAG	2 cut(s)	706, 940
SmoI	CTYRAG	2 cut(s)	706, 940
Sse9I	AATT	3 cut(s)	223, 591, 780
SseBI	AGGCCT	1 cut(s)	655
SspMI	CTAG	2 cut(s)	404, 557
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	4 cut(s)	509, 546, 641, 655
TaaI	ACNGT	5 cut(s)	10, 112, 254, 487, 570
TasI	AATT	3 cut(s)	223, 591, 780
TatI	WGTACW	2 cut(s)	613, 698
Tru1I	TTAA	4 cut(s)	32, 186, 635, 720
Tru9I	TTAA	4 cut(s)	32, 186, 635, 720
TscAI	CASTG	6 cut(s)	15, 115, 573, 612, 808, 844
TseI	GCWGC	3 cut(s)	671, 791, 794
TspDTI	ATGAA	5 cut(s)	73, 124, 295, 551, 926
TspRI	CASTG	6 cut(s)	15, 115, 573, 612, 808, 844
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	404, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.