Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Forward (+)

14952591 .. 14953849

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G30640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAAGTCAACGGCGGGGAAGGAAAGGTGGAGATGGGATCGGGACTCTACCCTGACTGGTCTGAGTTGACTCGAGAATGTCTTCTTGACATCTTCTCACGGCTAAGCCAGGAACAAAGATGGATTGGACCGATGCTGGTCAGCAAGAACTGGATGAACGCATGCTATGACCCGACACTAAACACCATCTTCGACCTCGAAACTCGGTTTCTGTCGTTCCCTGAGTCGATCAACTGGTGGACTCCCGAGTTTGAGGATAAAGTCGATTCATTTCTCCGATCTGTTGTTGATCGGAGTGAAGGAGGTCTCACAGAGATTCGGATCAGGCATTGTACAGAACGCTCTCTATCTTACGCCGCCGAGAGGTGCCCTAATCTAGAGGTACTTTGGATAAAGAACTGCCCAAATGTTACAGATGCGTCAATGGAGAAGATAGCTATGAACTGTCCAAATCTTAGAGAACTTGATATAAGCTACTCTTATGGCATAACTCACGAGTCTCTGATAACATTGGGGAGGAGTTGCCAAAATTTAAAGATTCTGAAACGGAATTTGTTGCCCCGGCTAGGTCCTAGCCTGCCAACAATCGTCGCGCCACTAGACTATCTGGCTACATTTCCTAGATATGGGAATATAGAGGCTAGAATAATTGGGAAATACATGACACAGCTCAAGCATTTGGAGATTCGATACTCCACATTGACTGCTAGAGGACTTGACTCGGTTTGTAAGGGATGTTCGAATCTAGAGTACATGGACTTACGCGGATGTATATCATTGACCAGAAGTGATATAAACACTAATACGTCGGGCTTGAAGAATTTGACGGAGATCATTAAGCCGGATTTCAATCCTCCGATTGCTGTTTTACGCGTTCCAAGACCTGGTAATCCAAGAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

301

Amino Acids

34.3

Weight (kDa)

5.82

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	366
AccB7I	CCANNNNNTGG	1 cut(s)	884
AccII	CGCG	3 cut(s)	593, 765, 873
AciI	CCGC	3 cut(s)	15, 357, 765
AclWI	GGATC	2 cut(s)	46, 329
AcsI	RAATTY	3 cut(s)	529, 550, 820
AfaI	GTAC	3 cut(s)	334, 384, 752
AfiI	CCNNNNNNNGG	4 cut(s)	363, 566, 626, 884
AflIII	ACRYGT	1 cut(s)	871
AgsI	TTSAA	2 cut(s)	817, 850
AjnI	CCWGG	2 cut(s)	108, 883
AluBI	AGCT	3 cut(s)	437, 474, 670
AluI	AGCT	3 cut(s)	437, 474, 670
Alw26I	GTCTC	2 cut(s)	311, 504
AlwI	GGATC	2 cut(s)	46, 329
Ama87I	CYCGRG	2 cut(s)	72, 245
ApoI	RAATTY	3 cut(s)	529, 550, 820
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	2 cut(s)	128, 569
AsuC2I	CCSGG	1 cut(s)	562
AsuII	TTCGAA	1 cut(s)	740
AvaI	CYCGRG	2 cut(s)	72, 245
AvaII	GGWCC	2 cut(s)	128, 569
BaeGI	GKGCMC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	366
BauI	CACGAG	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	74
BccI	CCATC	3 cut(s)	28, 114, 194
BceAI	ACGGC	2 cut(s)	28, 116
BciT130I	CCWGG	2 cut(s)	110, 885
BcnI	CCSGG	1 cut(s)	562
BcoDI	GTCTC	2 cut(s)	311, 504
BfaI	CTAG	8 cut(s)	377, 566, 573, 599, 621, 642, 708, 746
BisI	GCNGC	1 cut(s)	357
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	358
Bme1390I	CCNGG	3 cut(s)	110, 562, 885
Bme18I	GGWCC	2 cut(s)	128, 569
BmeT110I	CYCGRG	2 cut(s)	72, 245
BmgT120I	GGNCC	2 cut(s)	128, 569
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	3 cut(s)	110, 562, 885
BmsI	GCATC	2 cut(s)	123, 406
BpiI	GAAGAC	1 cut(s)	74
Bpu1102I	GCTNAGC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	740
BpuEI	CTTGAG	1 cut(s)	656
BpuMI	CCSGG	1 cut(s)	562
BsaBI	GATNNNNATC	3 cut(s)	320, 772, 849
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	4 cut(s)	363, 566, 626, 884
Bse1I	ACTGG	3 cut(s)	62, 155, 239
Bse8I	GATNNNNATC	3 cut(s)	320, 772, 849
BseBI	CCWGG	2 cut(s)	110, 885
BseDI	CCNNGG	1 cut(s)	560
BseGI	GGATG	3 cut(s)	159, 740, 773
BseJI	GATNNNNATC	3 cut(s)	320, 772, 849
BseLI	CCNNNNNNNGG	4 cut(s)	363, 566, 626, 884
BseMII	CTCAG	2 cut(s)	54, 213
BseNI	ACTGG	3 cut(s)	62, 155, 239
BseRI	GAGGAG	1 cut(s)	532
BseSI	GKGCMC	1 cut(s)	371
Bsh1236I	CGCG	3 cut(s)	593, 765, 873
BshNI	GGYRCC	1 cut(s)	366
BsiHKCI	CYCGRG	2 cut(s)	72, 245
BsiSI	CCGG	2 cut(s)	562, 842
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	4 cut(s)	363, 566, 626, 884
BsmAI	GTCTC	2 cut(s)	311, 504
BsmFI	GGGAC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	2 cut(s)	72, 245
Bsp119I	TTCGAA	1 cut(s)	740
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp1407I	TGTACA	1 cut(s)	332
Bsp143I	GATC	6 cut(s)	38, 228, 278, 289, 321, 831
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	3 cut(s)	15, 357, 765
BspCNI	CTCAG	2 cut(s)	55, 214
BspFNI	CGCG	3 cut(s)	593, 765, 873
BspLI	GGNNCC	1 cut(s)	368
BspPI	GGATC	2 cut(s)	46, 329
BspT104I	TTCGAA	1 cut(s)	740
BspT107I	GGYRCC	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	332
BsrI	ACTGG	3 cut(s)	62, 155, 239
BssECI	CCNNGG	1 cut(s)	560
BssMI	GATC	6 cut(s)	38, 228, 278, 289, 321, 831
BssSI	CACGAG	1 cut(s)	494
Bst2BI	CACGAG	1 cut(s)	494
Bst2UI	CCWGG	2 cut(s)	110, 885
Bst4CI	ACNGT	1 cut(s)	446
BstAUI	TGTACA	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	740
BstC8I	GCNNGC	2 cut(s)	163, 578
BstDEI	CTNAG	4 cut(s)	63, 104, 222, 455
BstF5I	GGATG	3 cut(s)	159, 740, 773
BstFNI	CGCG	3 cut(s)	593, 765, 873
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	6 cut(s)	41, 231, 281, 292, 324, 834
BstMAI	GTCTC	2 cut(s)	311, 504
BstMBI	GATC	6 cut(s)	38, 228, 278, 289, 321, 831
BstNI	CCWGG	2 cut(s)	110, 885
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	3 cut(s)	108, 560, 883
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	3 cut(s)	593, 765, 873
BstV2I	GAAGAC	1 cut(s)	74
BtsCI	GGATG	3 cut(s)	159, 740, 773
Cac8I	GCNNGC	2 cut(s)	163, 578
CfoI	GCGC	1 cut(s)	595
Cfr13I	GGNCC	2 cut(s)	128, 569
CseI	GACGC	1 cut(s)	408
CsiI	ACCWGGT	1 cut(s)	883
Csp6I	GTAC	3 cut(s)	333, 383, 751
CviAII	CATG	3 cut(s)	162, 661, 754
CviQI	GTAC	3 cut(s)	333, 383, 751
DdeI	CTNAG	4 cut(s)	63, 104, 222, 455
DpnI	GATC	6 cut(s)	40, 230, 280, 291, 323, 833
DpnII	GATC	6 cut(s)	38, 228, 278, 289, 321, 831
DraI	TTTAAA	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	2 cut(s)	128, 569
Eco88I	CYCGRG	2 cut(s)	72, 245
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	108, 883
FaeI	CATG	3 cut(s)	165, 664, 757
FalI	AAGNNNNNCTT	2 cut(s)	463, 495
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	3 cut(s)	161, 660, 753
FauI	CCCGC	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	3 cut(s)	166, 747, 780
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	8 cut(s)	377, 566, 573, 599, 621, 642, 708, 746
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	1 cut(s)	357
HapII	CCGG	2 cut(s)	562, 842
HgaI	GACGC	1 cut(s)	408
HhaI	GCGC	1 cut(s)	595
Hin1II	CATG	3 cut(s)	165, 664, 757
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HincII	GTYRAC	2 cut(s)	10, 69
HindII	GTYRAC	2 cut(s)	10, 69
HpaII	CCGG	2 cut(s)	562, 842
Hpy166II	GTNNAC	3 cut(s)	10, 69, 240
Hpy188I	TCNGA	7 cut(s)	64, 278, 294, 321, 504, 543, 858
Hpy188III	TCNNGA	7 cut(s)	42, 74, 86, 245, 377, 494, 746
Hpy8I	GTNNAC	3 cut(s)	10, 69, 240
Hpy99I	CGWCG	2 cut(s)	593, 811
HpyAV	CCTTC	2 cut(s)	14, 293
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	806
HpyF3I	CTNAG	4 cut(s)	63, 104, 222, 455
HpySE526I	ACGT	1 cut(s)	806
Hsp92II	CATG	3 cut(s)	165, 664, 757
HspAI	GCGC	1 cut(s)	593
Kzo9I	GATC	6 cut(s)	38, 228, 278, 289, 321, 831
LweI	GCATC	2 cut(s)	123, 406
MabI	ACCWGGT	1 cut(s)	883
MaeI	CTAG	8 cut(s)	377, 566, 573, 599, 621, 642, 708, 746
MaeII	ACGT	1 cut(s)	806
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	6 cut(s)	40, 230, 280, 291, 323, 833
MboI	GATC	6 cut(s)	38, 228, 278, 289, 321, 831
MboII	GAAGA	5 cut(s)	74, 85, 181, 442, 829
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	4 cut(s)	529, 550, 648, 820
MluI	ACGCGT	1 cut(s)	871
MlyI	GAGTC	6 cut(s)	39, 64, 233, 235, 506, 713
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	2 cut(s)	533, 837
MspI	CCGG	2 cut(s)	562, 842
MspR9I	CCNGG	3 cut(s)	110, 562, 885
MvaI	CCWGG	2 cut(s)	110, 885
MvnI	CGCG	3 cut(s)	593, 765, 873
NciI	CCSGG	1 cut(s)	562
NdeII	GATC	6 cut(s)	38, 228, 278, 289, 321, 831
NlaIII	CATG	3 cut(s)	165, 664, 757
NlaIV	GGNNCC	1 cut(s)	368
NmeAIII	GCCGAG	1 cut(s)	385
NspI	RCATGY	1 cut(s)	165
NspV	TTCGAA	1 cut(s)	740
PaeI	GCATGC	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	5 cut(s)	266, 316, 538, 685, 742
PflMI	CCANNNNNTGG	1 cut(s)	884
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	6 cut(s)	39, 64, 232, 235, 505, 713
PpsI	GAGTC	6 cut(s)	39, 64, 232, 235, 505, 713
PpuMI	RGGWCCY	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	2 cut(s)	108, 883
PspGI	CCWGG	2 cut(s)	108, 883
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	2 cut(s)	128, 569
PspPPI	RGGWCCY	1 cut(s)	569
PsrI	GAACNNNNNNTAC	2 cut(s)	721, 753
RsaI	GTAC	3 cut(s)	334, 384, 752
RsaNI	GTAC	3 cut(s)	333, 383, 751
SaqAI	TTAA	2 cut(s)	533, 837
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	6 cut(s)	38, 228, 278, 289, 321, 831
Sau96I	GGNCC	2 cut(s)	128, 569
SchI	GAGTC	6 cut(s)	39, 64, 233, 235, 506, 713
ScrFI	CCNGG	3 cut(s)	110, 562, 885
SduI	GDGCHC	1 cut(s)	371
SexAI	ACCWGGT	1 cut(s)	883
SfaNI	GCATC	2 cut(s)	123, 406
Sfr274I	CTCGAG	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	740
SinI	GGWCC	2 cut(s)	128, 569
SlaI	CTCGAG	1 cut(s)	72
SmlI	CTYRAG	2 cut(s)	72, 671
SmoI	CTYRAG	2 cut(s)	72, 671
SphI	GCATGC	1 cut(s)	165
Sse9I	AATT	4 cut(s)	529, 550, 648, 820
SsiI	CCGC	3 cut(s)	15, 357, 765
SspMI	CTAG	8 cut(s)	377, 566, 573, 599, 621, 642, 708, 746
StyD4I	CCNGG	3 cut(s)	108, 560, 883
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	1 cut(s)	809
TaqI	TCGA	7 cut(s)	73, 192, 198, 227, 264, 688, 740
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	4 cut(s)	529, 550, 648, 820
TatI	WGTACW	2 cut(s)	332, 750
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	5 cut(s)	266, 316, 538, 685, 742
Tru1I	TTAA	2 cut(s)	533, 837
Tru9I	TTAA	2 cut(s)	533, 837
TspDTI	ATGAA	3 cut(s)	170, 258, 455
TspGWI	ACGGA	2 cut(s)	562, 842
Van91I	CCANNNNNTGG	1 cut(s)	884
VpaK11BI	GGWCC	2 cut(s)	128, 569
XapI	RAATTY	3 cut(s)	529, 550, 820
XbaI	TCTAGA	2 cut(s)	376, 745
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	8 cut(s)	377, 566, 573, 599, 621, 642, 708, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.