Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Forward (+)

72830705 .. 72843366

Gene Structure 12662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG458200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGATTTGTTTCAACTGTGGTTGCTATGGTCATGTTAAGGCTAATTGTTCTTACCAATATAATGGTGATGCATCCACTGAAGCCAACACTACTACCCCCATGAGTATGGATAAATCCCCAGTAACTACTACTATTGCTAACATGGAGATCAATATCTCACCTGAGCCCTCTACTGTCATGGTTTCGAGTGCAGCAAACTCACCTGAGCCCAATTCTTCTGCTGCTAGCATGGAGACCAATCTCTCACCTGAGCCATCCACTGTTGAAAATCCAAGTCCAGCTAGTTCAACTCCCATCACAGGTCATGGTCCCTGGATGCTTATGTCGTATAAGAACAGGAAAACCAACCCAGCTAAATCCCCTGCCAATCTTGTCTCAGCTAGGCCTGGTTCTAGATTTTCTCTTCTGCAAACTTTCGATGCTGATGGGGATGATGCCATGAATGAAAAACCACCAACATCCATTGACCATCTTCCCAAGCTTAACAGCTCTTCTGAACCAAAAATTGTTAAGGTTTGGAAGAAAGTTCAGGAAAAACTAACCAATTCTGTGGATGTTGGTGCTACTGTGAAGTCCACAACTTTTGTTGCCAACTCTACCAATACTTCTACAGTGGCTCTTCATGATATTACCAATGGCAAGGCTCATGTTAAAACTACTAAATCTGCTGCTTCTACTTCCAAACCTGTTGCTAGAAAGTCGTCTCTGATGAAGCATGATCCGGCTAGGAAGACTGCTTTTCCAAGTTTGACTACTTTAATCAATGGTGTTCAAGCTTCTCCTATTCACAATAATACTTCTGCCTTGTTTGGACATTGTCCACCTGTAATTTTGATGAAGGACAGCAACAACACATCACAGGACACAAAAACTCATCAAGCCATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

31.42

Weight (kDa)

8.88

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	713
AcuI	CTGAAG	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	4 cut(s)	13, 266, 288, 773
AjnI	CCWGG	2 cut(s)	311, 385
AluBI	AGCT	6 cut(s)	281, 353, 380, 481, 489, 776
AluI	AGCT	6 cut(s)	281, 353, 380, 481, 489, 776
Alw26I	GTCTC	3 cut(s)	227, 379, 708
AlwI	GGATC	1 cut(s)	713
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	3 cut(s)	191, 221, 668
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	4 cut(s)	77, 150, 192, 237
AsuNHI	GCTAGC	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	308
BanII	GRGCYC	2 cut(s)	168, 210
BbsI	GAAGAC	1 cut(s)	737
BbvI	GCAGC	3 cut(s)	203, 208, 655
BccI	CCATC	4 cut(s)	262, 302, 419, 477
BciT130I	CCWGG	2 cut(s)	313, 387
BcoDI	GTCTC	3 cut(s)	227, 379, 708
BfaI	CTAG	6 cut(s)	225, 282, 381, 393, 693, 726
BfmI	CTRYAG	1 cut(s)	609
BisI	GCNGC	3 cut(s)	192, 222, 669
BlsI	GCNGC	3 cut(s)	193, 223, 670
Bme1390I	CCNGG	2 cut(s)	313, 387
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	2 cut(s)	313, 387
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	5 cut(s)	58, 80, 306, 409, 424
BmtI	GCTAGC	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	737
Bpu10I	CCTNAGC	3 cut(s)	162, 204, 249
BsaBI	GATNNNNATC	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	882
Bse8I	GATNNNNATC	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	313, 387
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	6 cut(s)	71, 254, 321, 436, 458, 559
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	4 cut(s)	153, 195, 240, 390
BseNI	ACTGG	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	203, 208, 655
BseYI	CCCAGC	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	3 cut(s)	227, 379, 708
BsmBI	CGTCTC	1 cut(s)	708
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	385
Bso31I	GGTCTC	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	168, 210
Bsp143I	GATC	2 cut(s)	147, 718
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	4 cut(s)	154, 196, 241, 389
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	1 cut(s)	310
BspOI	GCTAGC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	713
BspQI	GCTCTTC	2 cut(s)	496, 624
BspTNI	GGTCTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	882
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	2 cut(s)	147, 718
Bst2UI	CCWGG	2 cut(s)	313, 387
Bst4CI	ACNGT	5 cut(s)	17, 175, 262, 568, 613
Bst6I	CTCTTC	3 cut(s)	408, 496, 624
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	4 cut(s)	162, 204, 249, 376
BstF5I	GGATG	6 cut(s)	71, 254, 321, 436, 458, 559
BstKTI	GATC	2 cut(s)	150, 721
BstMAI	GTCTC	3 cut(s)	227, 379, 708
BstMBI	GATC	2 cut(s)	147, 718
BstNI	CCWGG	2 cut(s)	313, 387
BstSCI	CCNGG	2 cut(s)	311, 385
BstSFI	CTRYAG	1 cut(s)	609
BstV1I	GCAGC	3 cut(s)	203, 208, 655
BstV2I	GAAGAC	1 cut(s)	737
BstXI	CCANNNNNNTGG	3 cut(s)	62, 106, 550
BsuRI	GGCC	1 cut(s)	385
BtsCI	GGATG	6 cut(s)	71, 254, 321, 436, 458, 559
BtsIMutI	CAGTG	3 cut(s)	75, 258, 618
Cac8I	GCNNGC	1 cut(s)	226
CciI	TCATGA	1 cut(s)	622
Cfr13I	GGNCC	1 cut(s)	308
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
DdeI	CTNAG	4 cut(s)	162, 204, 249, 376
DpnI	GATC	2 cut(s)	149, 720
DpnII	GATC	2 cut(s)	147, 718
Eam1104I	CTCTTC	3 cut(s)	408, 496, 624
EarI	CTCTTC	3 cut(s)	408, 496, 624
Eco147I	AGGCCT	1 cut(s)	385
Eco24I	GRGCYC	2 cut(s)	168, 210
Eco31I	GGTCTC	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	311, 385
EcoT22I	ATGCAT	1 cut(s)	73
EcoT38I	GRGCYC	2 cut(s)	168, 210
Esp3I	CGTCTC	1 cut(s)	708
FaqI	GGGAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	192, 222, 669
FokI	GGATG	6 cut(s)	58, 241, 328, 443, 445, 566
FriOI	GRGCYC	2 cut(s)	168, 210
Fsp4HI	GCNGC	3 cut(s)	192, 222, 669
FspBI	CTAG	6 cut(s)	225, 282, 381, 393, 693, 726
GluI	GCNGC	3 cut(s)	192, 222, 669
GsaI	CCCAGC	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	1 cut(s)	722
HindIII	AAGCTT	2 cut(s)	479, 774
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	4 cut(s)	77, 150, 192, 237
Hpy166II	GTNNAC	2 cut(s)	576, 821
Hpy188I	TCNGA	2 cut(s)	496, 708
Hpy188III	TCNNGA	3 cut(s)	393, 530, 623
Hpy8I	GTNNAC	2 cut(s)	576, 821
HpyAV	CCTTC	1 cut(s)	832
HpyCH4III	ACNGT	5 cut(s)	17, 175, 262, 568, 613
HpyCH4V	TGCA	4 cut(s)	71, 191, 409, 887
HpyF3I	CTNAG	4 cut(s)	162, 204, 249, 376
Kzo9I	GATC	2 cut(s)	147, 718
LguI	GCTCTTC	2 cut(s)	496, 624
Lsp1109I	GCAGC	3 cut(s)	203, 208, 655
LweI	GCATC	5 cut(s)	58, 80, 306, 409, 424
MaeI	CTAG	6 cut(s)	225, 282, 381, 393, 693, 726
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	2 cut(s)	149, 720
MboI	GATC	2 cut(s)	147, 718
MboII	GAAGA	7 cut(s)	207, 395, 464, 483, 532, 611, 742
MhlI	GDGCHC	2 cut(s)	168, 210
MluCI	AATT	5 cut(s)	43, 211, 504, 544, 828
MnlI	CCTC	1 cut(s)	178
Mph1103I	ATGCAT	1 cut(s)	73
MseI	TTAA	5 cut(s)	36, 483, 510, 651, 758
MslI	CAYNNNNRTG	1 cut(s)	104
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	2 cut(s)	313, 387
MvaI	CCWGG	2 cut(s)	313, 387
NdeII	GATC	2 cut(s)	147, 718
NheI	GCTAGC	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	73
PagI	TCATGA	1 cut(s)	622
PceI	AGGCCT	1 cut(s)	385
PciSI	GCTCTTC	2 cut(s)	496, 624
PflFI	GACNNNGTC	1 cut(s)	816
PkrI	GCNGC	3 cut(s)	193, 223, 670
Psp6I	CCWGG	2 cut(s)	311, 385
PspFI	CCCAGC	1 cut(s)	349
PspGI	CCWGG	2 cut(s)	311, 385
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	308
PsyI	GACNNNGTC	1 cut(s)	816
RseI	CAYNNNNRTG	1 cut(s)	104
SapI	GCTCTTC	2 cut(s)	496, 624
SaqAI	TTAA	5 cut(s)	36, 483, 510, 651, 758
SatI	GCNGC	3 cut(s)	192, 222, 669
Sau3AI	GATC	2 cut(s)	147, 718
Sau96I	GGNCC	1 cut(s)	308
ScrFI	CCNGG	2 cut(s)	313, 387
SduI	GDGCHC	2 cut(s)	168, 210
SfaNI	GCATC	5 cut(s)	58, 80, 306, 409, 424
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	104
Sse9I	AATT	5 cut(s)	43, 211, 504, 544, 828
SseBI	AGGCCT	1 cut(s)	385
SspMI	CTAG	6 cut(s)	225, 282, 381, 393, 693, 726
StuI	AGGCCT	1 cut(s)	385
StyD4I	CCNGG	2 cut(s)	311, 385
TaaI	ACNGT	5 cut(s)	17, 175, 262, 568, 613
TaqI	TCGA	2 cut(s)	185, 417
TasI	AATT	5 cut(s)	43, 211, 504, 544, 828
Tru1I	TTAA	5 cut(s)	36, 483, 510, 651, 758
Tru9I	TTAA	5 cut(s)	36, 483, 510, 651, 758
TscAI	CASTG	3 cut(s)	82, 265, 618
TseI	GCWGC	3 cut(s)	191, 221, 668
TspDTI	ATGAA	5 cut(s)	455, 459, 611, 725, 851
TspRI	CASTG	3 cut(s)	82, 265, 618
Tth111I	GACNNNGTC	1 cut(s)	816
VpaK11BI	GGWCC	1 cut(s)	308
XbaI	TCTAGA	1 cut(s)	392
XspI	CTAG	6 cut(s)	225, 282, 381, 393, 693, 726
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.