Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

60840949 .. 60848176

Gene Structure 7228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG438700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCAGTCACACTAAGAGAGAAAATGCTGAAGTTGATCTTTGAGGCCTGGAAGTGCCCAAACCTTGAGGTTCTTTCGATCAAGTGCTGCCCGAATGTGACTGATGCATCCATCGCTGACATAGAGTTTCAGTGCACCATGATTAAGGAACTTGACATCAGCTATTGCCATGAAATATCTCCGGAGTCTCTGGTGTTGATTGGGAAGAACTGCCCTAATCTCACAATTGTTAAATGGAATGCATTGAATTTGCTAGCTCCTTCTGAACACGCTGAGATTGTTCCTCAAGATGGAAATTCAGAAGTTGATGCAATTGGCAATTCAGAGCACAACATGTTGGTTAGGATATGGAAGTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

120

Amino Acids

13.54

Weight (kDa)

4.95

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	181
AcsI	RAATTY	2 cut(s)	247, 295
AcuI	CTGAAG	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	3 cut(s)	162, 257, 360
AluI	AGCT	3 cut(s)	162, 257, 360
Alw21I	GWGCWC	2 cut(s)	137, 330
Alw26I	GTCTC	1 cut(s)	192
Alw44I	GTGCAC	1 cut(s)	133
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	1 cut(s)	45
ApaLI	GTGCAC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	87
ApoI	RAATTY	2 cut(s)	247, 295
AsuNHI	GCTAGC	1 cut(s)	253
BaeGI	GKGCMC	2 cut(s)	59, 137
Bbv12I	GWGCWC	2 cut(s)	137, 330
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	119, 284
BciT130I	CCWGG	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	3 cut(s)	94, 116, 298
BmtI	GCTAGC	1 cut(s)	257
BpuEI	CTTGAG	2 cut(s)	86, 270
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	264
BseSI	GKGCMC	2 cut(s)	59, 137
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	2 cut(s)	137, 330
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	47
Bsp1286I	GDGCHC	3 cut(s)	59, 137, 330
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	36, 78
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	181
BspOI	GCTAGC	1 cut(s)	257
BssMI	GATC	2 cut(s)	36, 78
Bst2UI	CCWGG	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	14, 273
BstF5I	GGATG	1 cut(s)	107
BstKTI	GATC	2 cut(s)	39, 81
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	2 cut(s)	36, 78
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	47
BstSLI	GKGCMC	2 cut(s)	59, 137
BstV1I	GCAGC	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	255
CviAII	CATG	3 cut(s)	139, 170, 334
CviJI	RGCY	4 cut(s)	47, 162, 257, 360
CviKI_1	RGCY	4 cut(s)	47, 162, 257, 360
DdeI	CTNAG	2 cut(s)	14, 273
DpnI	GATC	2 cut(s)	38, 80
DpnII	GATC	2 cut(s)	36, 78
Eco147I	AGGCCT	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	47
EcoT22I	ATGCAT	2 cut(s)	109, 244
FaeI	CATG	3 cut(s)	142, 173, 337
FaiI	YATR	5 cut(s)	122, 140, 171, 335, 349
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	3 cut(s)	138, 169, 333
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	3 cut(s)	142, 173, 337
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	3 cut(s)	265, 301, 325
Hpy188III	TCNNGA	2 cut(s)	182, 287
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	107, 135, 242, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	14, 273
Hsp92II	CATG	3 cut(s)	142, 173, 337
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	36, 78
LmnI	GCTCC	2 cut(s)	262, 357
LpnPI	CCDG	4 cut(s)	34, 61, 176, 195
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	3 cut(s)	94, 116, 298
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	7, 97
MalI	GATC	2 cut(s)	38, 80
MboI	GATC	2 cut(s)	36, 78
MboII	GAAGA	1 cut(s)	217
MfeI	CAATTG	2 cut(s)	225, 312
MhlI	GDGCHC	3 cut(s)	59, 137, 330
MluCI	AATT	5 cut(s)	225, 247, 295, 312, 319
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	3 cut(s)	37, 61, 294
Mph1103I	ATGCAT	2 cut(s)	109, 244
MroI	TCCGGA	1 cut(s)	181
MseI	TTAA	2 cut(s)	144, 231
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	49
MunI	CAATTG	2 cut(s)	225, 312
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	36, 78
NheI	GCTAGC	1 cut(s)	253
NlaIII	CATG	3 cut(s)	142, 173, 337
NmuCI	GTSAC	2 cut(s)	7, 97
NsiI	ATGCAT	2 cut(s)	109, 244
NspI	RCATGY	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	47
PciI	ACATGT	1 cut(s)	333
PctI	GAATGC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	144, 231
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	2 cut(s)	36, 78
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	3 cut(s)	59, 137, 330
SetI	ASST	5 cut(s)	66, 72, 164, 259, 362
SfaNI	GCATC	3 cut(s)	94, 116, 298
SmlI	CTYRAG	2 cut(s)	65, 285
SmoI	CTYRAG	2 cut(s)	65, 285
Sse9I	AATT	5 cut(s)	225, 247, 295, 312, 319
SseBI	AGGCCT	1 cut(s)	47
SspMI	CTAG	1 cut(s)	254
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	47
TaqI	TCGA	1 cut(s)	77
TasI	AATT	5 cut(s)	225, 247, 295, 312, 319
Tru1I	TTAA	2 cut(s)	144, 231
Tru9I	TTAA	2 cut(s)	144, 231
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	2 cut(s)	7, 97
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	2 cut(s)	7, 97
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	137
VneI	GTGCAC	1 cut(s)	133
XapI	RAATTY	2 cut(s)	247, 295
XceI	RCATGY	1 cut(s)	337
XspI	CTAG	1 cut(s)	254
Zsp2I	ATGCAT	2 cut(s)	109, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.