Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Forward (+)

42074156 .. 42083845

Gene Structure 9690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG166900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCTATAACCAAAGATGTTGGTTCCAGTTCTCAAGTGCAGGAAGTGGAGTTTAAGAATGATAAGAACAACAACAAGGATGCAGGTGGTGAACCAAGCCTACATCAACGTGACAAAAATGATAAGCTTAAAGATGAGGTTGATCCAGATGAAGAGGATGAGCTTGCCACATTCAAATGTGACAAAGAATTGGTTCTTGGCCCTAAGTTTTCTCTCAAGGAGCAGCTTGAGAAGGATAAAGATGATGAAAGTTTGAGGAAATGGAAGCAGCAACTTCTTGGGAGAGTTGATCTCTCTGCACTAGCTGTTAGAGAGAGTAAAGAAGCAGAAGTGAGGATCTTAAGTATGACTCTGATGTTCCAGGAGCGGCCTGAACTTGTGCTGCCGATTCCATTCACCAACAAACCAAAGAGCAATCTTTTCACACTCAAAGGAGGAAGCAAGTTCCGGACCAAATTCACATTTACTGTCTCAAAAAACATTGTCTCAGGCCTCAAGTTCACCGGCTCAATCTGGAAGACTGGTGTCAAAGAGTTTCGGTGCACCATGATTAAGGAACTTGACATCAGCTATTGCCATGAAATATCTTCGGAATCTCTGGTGTGGATTGGGAAGAATTGCCCTAATCTCACAATTGTTAAATGGAATGCATTGAATTTGCTAGATCCTTCTGAACACGCTGGGATTGTTCCTGAGGAGTATTTAAAAACTTGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

239

Amino Acids

27.18

Weight (kDa)

6.05

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	53 - 177	3.8e-38	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	367
AccIII	TCCGGA	1 cut(s)	447
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	3 cut(s)	137, 344, 659
AcsI	RAATTY	2 cut(s)	455, 655
AflII	CTTAAG	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	175, 655
AjnI	CCWGG	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	5 cut(s)	127, 163, 226, 305, 570
AluI	AGCT	5 cut(s)	127, 163, 226, 305, 570
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	2 cut(s)	475, 490
Alw44I	GTGCAC	1 cut(s)	541
AlwI	GGATC	3 cut(s)	137, 344, 659
Aor13HI	TCCGGA	1 cut(s)	447
AoxI	GGCC	3 cut(s)	199, 368, 490
ApaLI	GTGCAC	1 cut(s)	541
ApeKI	GCWGC	3 cut(s)	223, 268, 382
ApoI	RAATTY	2 cut(s)	455, 655
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	200, 450
AsuHPI	GGTGA	3 cut(s)	101, 388, 493
AvaII	GGWCC	1 cut(s)	450
AxyI	CCTNAGG	1 cut(s)	693
BaeGI	GKGCMC	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	3 cut(s)	235, 280, 369
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	475, 490
BfaI	CTAG	2 cut(s)	302, 662
BfrI	CTTAAG	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	74
BisI	GCNGC	4 cut(s)	224, 269, 368, 383
BlsI	GCNGC	4 cut(s)	225, 270, 369, 384
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	1 cut(s)	450
BmgT120I	GGNCC	2 cut(s)	200, 450
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	70
BoxI	GACNNNNGTC	1 cut(s)	524
BpiI	GAAGAC	1 cut(s)	524
BplI	GAGNNNNNCTC	2 cut(s)	276, 308
BpuEI	CTTGAG	4 cut(s)	18, 200, 248, 479
BsaWI	WCCGGW	1 cut(s)	447
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	27, 526
Bse21I	CCTNAGG	1 cut(s)	693
BseAI	TCCGGA	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	362
BseGI	GGATG	2 cut(s)	85, 163
BseMII	CTCAG	2 cut(s)	501, 684
BseNI	ACTGG	2 cut(s)	27, 526
BseRI	GAGGAG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	3 cut(s)	235, 280, 369
BseYI	CCCAGC	1 cut(s)	680
BsgI	GTGCAG	2 cut(s)	59, 282
BshFI	GGCC	3 cut(s)	201, 370, 492
BsiHKAI	GWGCWC	1 cut(s)	545
BsiSI	CCGG	2 cut(s)	448, 504
BsmAI	GTCTC	2 cut(s)	475, 490
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	3 cut(s)	201, 370, 492
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp13I	TCCGGA	1 cut(s)	447
Bsp143I	GATC	4 cut(s)	142, 289, 336, 664
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	3 cut(s)	201, 370, 492
BspCNI	CTCAG	2 cut(s)	500, 685
BspEI	TCCGGA	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	3 cut(s)	137, 344, 659
BspTI	CTTAAG	1 cut(s)	340
BsrBI	CCGCTC	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	27, 526
BssAI	RCCGGY	1 cut(s)	503
BssMI	GATC	4 cut(s)	142, 289, 336, 664
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	3 cut(s)	204, 487, 693
BstF5I	GGATG	2 cut(s)	85, 163
BstKTI	GATC	4 cut(s)	145, 292, 339, 667
BstMAI	GTCTC	2 cut(s)	475, 490
BstMBI	GATC	4 cut(s)	142, 289, 336, 664
BstNI	CCWGG	1 cut(s)	362
BstPAI	GACNNNNGTC	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	545
BstV1I	GCAGC	3 cut(s)	235, 280, 369
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	2 cut(s)	336, 664
BstYI	RGATCY	2 cut(s)	336, 664
Bsu36I	CCTNAGG	1 cut(s)	693
BsuRI	GGCC	3 cut(s)	201, 370, 492
BtsCI	GGATG	2 cut(s)	85, 163
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	165
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	2 cut(s)	200, 450
CviAII	CATG	2 cut(s)	547, 578
DdeI	CTNAG	3 cut(s)	204, 487, 693
DpnI	GATC	4 cut(s)	144, 291, 338, 666
DpnII	GATC	4 cut(s)	142, 289, 336, 664
DraI	TTTAAA	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	450
Eco81I	CCTNAGG	1 cut(s)	693
EcoRII	CCWGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	652
FaeI	CATG	2 cut(s)	550, 581
FaiI	YATR	4 cut(s)	8, 347, 548, 579
FatI	CATG	2 cut(s)	546, 577
Fnu4HI	GCNGC	4 cut(s)	224, 269, 368, 383
FokI	GGATG	2 cut(s)	92, 170
Fsp4HI	GCNGC	4 cut(s)	224, 269, 368, 383
FspBI	CTAG	2 cut(s)	302, 662
GluI	GCNGC	4 cut(s)	224, 269, 368, 383
GsaI	CCCAGC	1 cut(s)	684
HaeIII	GGCC	3 cut(s)	201, 370, 492
HapII	CCGG	2 cut(s)	448, 504
Hin1II	CATG	2 cut(s)	550, 581
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	3 cut(s)	349, 388, 593
HpaII	CCGG	2 cut(s)	448, 504
HphI	GGTGA	3 cut(s)	101, 388, 493
Hpy166II	GTNNAC	3 cut(s)	92, 501, 543
Hpy188I	TCNGA	3 cut(s)	354, 592, 673
Hpy188III	TCNNGA	4 cut(s)	146, 448, 514, 692
Hpy8I	GTNNAC	3 cut(s)	92, 501, 543
HpyAV	CCTTC	2 cut(s)	226, 678
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	5 cut(s)	40, 83, 299, 543, 650
HpyF3I	CTNAG	3 cut(s)	204, 487, 693
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	550, 581
Kpn2I	TCCGGA	1 cut(s)	447
Kzo9I	GATC	4 cut(s)	142, 289, 336, 664
LmnI	GCTCC	2 cut(s)	220, 364
Lsp1109I	GCAGC	3 cut(s)	235, 280, 369
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	302, 662
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	2 cut(s)	110, 179
MalI	GATC	4 cut(s)	144, 291, 338, 666
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	4 cut(s)	142, 289, 336, 664
MboII	GAAGA	4 cut(s)	164, 529, 579, 625
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	2 cut(s)	336, 664
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	5 cut(s)	188, 455, 616, 633, 655
MlyI	GAGTC	1 cut(s)	343
MnlI	CCTC	7 cut(s)	130, 148, 249, 327, 428, 503, 688
Mph1103I	ATGCAT	1 cut(s)	652
MroI	TCCGGA	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	7 cut(s)	54, 129, 341, 552, 639, 704, 718
MslI	CAYNNNNRTG	2 cut(s)	108, 175
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	2 cut(s)	448, 504
MspR9I	CCNGG	1 cut(s)	362
MunI	CAATTG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	652
MvaI	CCWGG	1 cut(s)	362
NdeII	GATC	4 cut(s)	142, 289, 336, 664
NlaIII	CATG	2 cut(s)	550, 581
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	2 cut(s)	110, 179
NsiI	ATGCAT	1 cut(s)	652
PaqCI	CACCTGC	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	492
PctI	GAATGC	1 cut(s)	652
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	388, 593
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	225, 270, 369, 384
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PshAI	GACNNNNGTC	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	200, 450
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
PsuI	RGATCY	2 cut(s)	336, 664
RseI	CAYNNNNRTG	2 cut(s)	108, 175
SaqAI	TTAA	7 cut(s)	54, 129, 341, 552, 639, 704, 718
SatI	GCNGC	4 cut(s)	224, 269, 368, 383
Sau3AI	GATC	4 cut(s)	142, 289, 336, 664
Sau96I	GGNCC	2 cut(s)	200, 450
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	545
SetI	ASST	8 cut(s)	88, 112, 129, 141, 165, 228, 307, 572
SfaNI	GCATC	1 cut(s)	70
SinI	GGWCC	1 cut(s)	450
SmiMI	CAYNNNNRTG	2 cut(s)	108, 175
SmlI	CTYRAG	5 cut(s)	33, 215, 227, 340, 494
SmoI	CTYRAG	5 cut(s)	33, 215, 227, 340, 494
Sse9I	AATT	5 cut(s)	188, 455, 616, 633, 655
SseBI	AGGCCT	1 cut(s)	492
SsiI	CCGC	1 cut(s)	367
SspMI	CTAG	2 cut(s)	302, 662
StuI	AGGCCT	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	1 cut(s)	112
TasI	AATT	5 cut(s)	188, 455, 616, 633, 655
TauI	GCSGC	1 cut(s)	370
TfiI	GAWTC	2 cut(s)	388, 593
Tru1I	TTAA	7 cut(s)	54, 129, 341, 552, 639, 704, 718
Tru9I	TTAA	7 cut(s)	54, 129, 341, 552, 639, 704, 718
TseFI	GTSAC	2 cut(s)	110, 179
TseI	GCWGC	3 cut(s)	223, 268, 382
Tsp45I	GTSAC	2 cut(s)	110, 179
TspDTI	ATGAA	3 cut(s)	165, 261, 594
Vha464I	CTTAAG	1 cut(s)	340
VneI	GTGCAC	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	450
XapI	RAATTY	2 cut(s)	455, 655
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	2 cut(s)	302, 662
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.