Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

14087200 .. 14088027

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGATAAATCCCCAGCAACTACTACTGTTGCTAACATTGAGTTCAACATCTCACCTGAGCCCTCTACTGTCATTGTTTCGAGTGTAGCAAACTCACCTGAGCCCAATTTTTCTATTGCTAGCATGGAGACCAATCTCTCACTTGAGCCATCTACTGTTGAAAATCCAAGTCCAGCTAGTTCGACTCCCATCGCAGGTCATGGTCCCTGGATGCTTATGTCGTATAAGAACAGGAAAACCAACCCAGCTAAAGCCCCTGCCAATTTTGTCTCTGCTAAGTCTGGTTCTAGATTTTCTCTTTTGCAAACTTTCGATGCTGAAGGGGATGATGCCATGAATGAAAAACCACCAACATCCATTGGCCAACTTCCCAAGCTTAACAACTCTTCTGAACCAAAAGTTGTTAAGGTTTGGAAGAAAGTTCAAGAAAAAATAACCAATTCTGTGGATGATGGTGCTACTGTGAAGTCCACAATTATTGATGCGAACTCTACCAATACTTCTACAGTGGCTCTTCATGATATTACCAATGGCAAGGCTCATGTTAAAACTACCAAATCTGCTGCTTCTACTTCCAAACCTGTTGTTAGAAAGTCGTCTCTGATGAAGCATGATCCGGCTAGAAAGACTGCTTTTACAAGTTTGACTACTTTAATCAATGGTGTTCATGCTTCTCCTATTCGCAATAATACTTCTGCCTTGTTTGGACATTGTCCACCTGTAATTTTGAAGAATGACAGCAACAACATATCACAGGATACAAAAATTCATCAAGGTGAAAATTCCAGCAGTGGCCAGGTTTTTTCTGACCTGTTATTGATAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

29.25

Weight (kDa)

9.08

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	608
AcoI	YGGCCR	2 cut(s)	361, 793
AcsI	RAATTY	2 cut(s)	765, 781
AcuI	CTGAAG	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	46, 161, 425, 730
AjnI	CCWGG	2 cut(s)	206, 795
AluBI	AGCT	3 cut(s)	176, 248, 376
AluI	AGCT	3 cut(s)	176, 248, 376
Alw26I	GTCTC	3 cut(s)	122, 274, 603
AlwI	GGATC	1 cut(s)	608
AoxI	GGCC	2 cut(s)	361, 793
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	2 cut(s)	765, 781
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	3 cut(s)	45, 87, 788
AsuNHI	GCTAGC	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	203
BalI	TGGCCA	2 cut(s)	363, 795
BanII	GRGCYC	2 cut(s)	63, 105
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	3 cut(s)	157, 197, 446
BciT130I	CCWGG	2 cut(s)	208, 797
BciVI	GTATCC	1 cut(s)	751
BcoDI	GTCTC	3 cut(s)	122, 274, 603
BfaI	CTAG	4 cut(s)	120, 177, 288, 621
BfmI	CTRYAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	751
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	2 cut(s)	208, 797
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	2 cut(s)	208, 797
BmsI	GCATC	4 cut(s)	201, 304, 319, 472
BmtI	GCTAGC	1 cut(s)	123
Bpu10I	CCTNAGC	2 cut(s)	57, 99
BpuEI	CTTGAG	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	208, 797
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	4 cut(s)	216, 331, 353, 454
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	48, 90
BseXI	GCAGC	1 cut(s)	550
BseYI	CCCAGC	2 cut(s)	13, 244
BshFI	GGCC	2 cut(s)	363, 795
BsiSI	CCGG	1 cut(s)	617
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	3 cut(s)	122, 274, 603
BsmBI	CGTCTC	1 cut(s)	603
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	363, 795
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	63, 105
Bsp143I	GATC	1 cut(s)	613
BspANI	GGCC	2 cut(s)	363, 795
BspCNI	CTCAG	2 cut(s)	49, 91
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	185
BspOI	GCTAGC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	608
BspQI	GCTCTTC	1 cut(s)	519
BspTNI	GGTCTC	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	613
Bst2UI	CCWGG	2 cut(s)	208, 797
Bst4CI	ACNGT	5 cut(s)	28, 70, 157, 463, 508
Bst6I	CTCTTC	2 cut(s)	391, 519
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	3 cut(s)	57, 99, 276
BstF5I	GGATG	4 cut(s)	216, 331, 353, 454
BstKTI	GATC	1 cut(s)	616
BstMAI	GTCTC	3 cut(s)	122, 274, 603
BstMBI	GATC	1 cut(s)	613
BstNI	CCWGG	2 cut(s)	208, 797
BstSCI	CCNGG	2 cut(s)	206, 795
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	445
BsuI	GTATCC	1 cut(s)	751
BsuRI	GGCC	2 cut(s)	363, 795
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	4 cut(s)	216, 331, 353, 454
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	2 cut(s)	513, 796
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	460, 495
CviAII	CATG	7 cut(s)	124, 200, 334, 518, 542, 611, 668
DdeI	CTNAG	3 cut(s)	57, 99, 276
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
EaeI	YGGCCR	2 cut(s)	361, 793
Eam1104I	CTCTTC	2 cut(s)	391, 519
EarI	CTCTTC	2 cut(s)	391, 519
Eco24I	GRGCYC	2 cut(s)	63, 105
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	206, 795
EcoT38I	GRGCYC	2 cut(s)	63, 105
Esp3I	CGTCTC	1 cut(s)	603
FaeI	CATG	7 cut(s)	127, 203, 337, 521, 545, 614, 671
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	7 cut(s)	123, 199, 333, 517, 541, 610, 667
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	4 cut(s)	223, 338, 340, 461
FriOI	GRGCYC	2 cut(s)	63, 105
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	4 cut(s)	120, 177, 288, 621
GluI	GCNGC	1 cut(s)	564
GsaI	CCCAGC	2 cut(s)	17, 248
HaeIII	GGCC	2 cut(s)	363, 795
HapII	CCGG	1 cut(s)	617
Hin1II	CATG	7 cut(s)	127, 203, 337, 521, 545, 614, 671
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	617
HphI	GGTGA	3 cut(s)	45, 87, 788
Hpy166II	GTNNAC	2 cut(s)	471, 716
Hpy188I	TCNGA	3 cut(s)	391, 603, 808
Hpy188III	TCNNGA	3 cut(s)	288, 425, 518
Hpy8I	GTNNAC	2 cut(s)	471, 716
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	5 cut(s)	28, 70, 157, 463, 508
HpyCH4V	TGCA	1 cut(s)	304
HpyF3I	CTNAG	3 cut(s)	57, 99, 276
Hsp92II	CATG	7 cut(s)	127, 203, 337, 521, 545, 614, 671
Kzo9I	GATC	1 cut(s)	613
LguI	GCTCTTC	1 cut(s)	519
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	4 cut(s)	201, 304, 319, 472
MaeI	CTAG	4 cut(s)	120, 177, 288, 621
MalI	GATC	1 cut(s)	615
MboI	GATC	1 cut(s)	613
MboII	GAAGA	4 cut(s)	378, 427, 506, 742
MhlI	GDGCHC	2 cut(s)	63, 105
MlsI	TGGCCA	2 cut(s)	363, 795
MluCI	AATT	7 cut(s)	106, 262, 439, 474, 723, 765, 781
MluNI	TGGCCA	2 cut(s)	363, 795
MlyI	GAGTC	1 cut(s)	178
MnlI	CCTC	1 cut(s)	73
Mox20I	TGGCCA	2 cut(s)	363, 795
MscI	TGGCCA	2 cut(s)	363, 795
MseI	TTAA	4 cut(s)	378, 405, 546, 653
MslI	CAYNNNNRTG	1 cut(s)	774
Msp20I	TGGCCA	2 cut(s)	363, 795
MspI	CCGG	1 cut(s)	617
MspR9I	CCNGG	2 cut(s)	208, 797
MvaI	CCWGG	2 cut(s)	208, 797
NdeII	GATC	1 cut(s)	613
NheI	GCTAGC	1 cut(s)	119
NlaIII	CATG	7 cut(s)	127, 203, 337, 521, 545, 614, 671
NlaIV	GGNNCC	1 cut(s)	205
PagI	TCATGA	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	519
PflFI	GACNNNGTC	1 cut(s)	711
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	206, 795
PspFI	CCCAGC	2 cut(s)	13, 244
PspGI	CCWGG	2 cut(s)	206, 795
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	711
RseI	CAYNNNNRTG	1 cut(s)	774
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	4 cut(s)	378, 405, 546, 653
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	1 cut(s)	613
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	208, 797
SduI	GDGCHC	2 cut(s)	63, 105
SfaNI	GCATC	4 cut(s)	201, 304, 319, 472
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	7 cut(s)	106, 262, 439, 474, 723, 765, 781
SspMI	CTAG	4 cut(s)	120, 177, 288, 621
StyD4I	CCNGG	2 cut(s)	206, 795
TaaI	ACNGT	5 cut(s)	28, 70, 157, 463, 508
TaqI	TCGA	3 cut(s)	80, 182, 312
TasI	AATT	7 cut(s)	106, 262, 439, 474, 723, 765, 781
Tru1I	TTAA	4 cut(s)	378, 405, 546, 653
Tru9I	TTAA	4 cut(s)	378, 405, 546, 653
TscAI	CASTG	2 cut(s)	513, 796
TseI	GCWGC	1 cut(s)	563
TspDTI	ATGAA	6 cut(s)	350, 354, 506, 620, 656, 758
TspRI	CASTG	2 cut(s)	513, 796
Tth111I	GACNNNGTC	1 cut(s)	711
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	2 cut(s)	765, 781
XbaI	TCTAGA	1 cut(s)	287
XspI	CTAG	4 cut(s)	120, 177, 288, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.