Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

18340546 .. 18341308

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCATGTCATGGCTGCTCGCCTGCAAGATCCCGCATCTCAACTCCGGCTTCGTCCTCGTGCCTAACTCAGTGCCGGAAGCGACTCGGTGGTTGGCACCCGAGATCGGGAGAAAGGTCGACTCCATTCTCCTGTCTGTTGCTGAATGGAGCGAGGGGTCGCTCAGGGAGATTCGCACCGGAAACTGCTCAGATGTACGTGTCCCTCTCTTTTGTCGCTGAAAGGTGCTCTAACCTTGAGGTCCTTTCAATCAAGTGCTCCTCCAATGTGACTGAGGCATCCATGGCTCACATAGCACTGCGGTGCTCCATGATGATGGAACTTGACATCAGCTTCTGCCATGGAATATCTCACGAGTCTCTGTTGTTGATAGGGAGGAATTGCCCTAATCTAACAATCCTTAAACGGAATTTTCTGAACATTCCAGATTATTCTGGAGCAGCTGGGGTAGTTCCTTATGGGTATTTAATGGGGTGTCGAAAACTTGAGTACTTGGATGTGTTTGGGTGTGAAAACTTGACTAGACGTGCTATCGACAATGCAATGTCTGAGCTCCCTAACCTGAAGGAGATTAAGAAGCCATATTTCTACACATGTAATATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

203

Amino Acids

22.38

Weight (kDa)

8.92

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	119
AciI	CCGC	2 cut(s)	34, 301
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	2 cut(s)	197, 491
AfiI	CCNNNNNNNGG	2 cut(s)	106, 107
AflIII	ACRYGT	2 cut(s)	198, 593
AgsI	TTSAA	1 cut(s)	249
AjiI	CACGTC	1 cut(s)	527
AleI	CACNNNNGTG	1 cut(s)	301
AluBI	AGCT	3 cut(s)	333, 443, 553
AluI	AGCT	3 cut(s)	333, 443, 553
Alw21I	GWGCWC	4 cut(s)	230, 260, 308, 555
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	24
AlwNI	CAGNNNCTG	1 cut(s)	336
Ama87I	CYCGRG	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	15, 440
ApoI	RAATTY	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	555
BauI	CACGAG	2 cut(s)	58, 353
Bbv12I	GWGCWC	4 cut(s)	230, 260, 308, 555
BbvI	GCAGC	2 cut(s)	2, 452
BccI	CCATC	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	522
BisI	GCNGC	2 cut(s)	16, 441
BlsI	GCNGC	2 cut(s)	17, 442
BmcAI	AGTACT	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	100
BmgBI	CACGTC	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	98
BmsI	GCATC	2 cut(s)	45, 287
BpmI	CTGGAG	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	257, 506
BsaAI	YACGTR	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	282, 340
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 107
Bse3DI	GCAATG	1 cut(s)	549
BseDI	CCNNGG	2 cut(s)	282, 340
BseGI	GGATG	2 cut(s)	278, 502
BseLI	CCNNNNNNNGG	2 cut(s)	106, 107
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	5 cut(s)	83, 177, 203, 264, 540
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	2, 452
BseYI	CCCAGC	1 cut(s)	443
BshNI	GGYRCC	1 cut(s)	96
BsiHKAI	GWGCWC	4 cut(s)	230, 260, 308, 555
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	3 cut(s)	47, 76, 179
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	106, 107
BsmAI	GTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	4 cut(s)	230, 260, 308, 555
Bsp143I	GATC	2 cut(s)	29, 104
Bsp19I	CCATGG	2 cut(s)	282, 340
BspACI	CCGC	2 cut(s)	34, 301
BspCNI	CTCAG	5 cut(s)	82, 176, 202, 265, 541
BspLI	GGNNCC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	549
BssECI	CCNNGG	2 cut(s)	282, 340
BssMI	GATC	2 cut(s)	29, 104
BssSI	CACGAG	2 cut(s)	58, 353
BssT1I	CCWWGG	2 cut(s)	282, 340
Bst2BI	CACGAG	2 cut(s)	58, 353
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	20, 24
BstDEI	CTNAG	5 cut(s)	69, 163, 189, 273, 549
BstDSI	CCRYGG	2 cut(s)	282, 340
BstF5I	GGATG	2 cut(s)	278, 502
BstKTI	GATC	2 cut(s)	32, 107
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	2 cut(s)	29, 104
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 293
BstNSI	RCATGY	2 cut(s)	9, 597
BstV1I	GCAGC	2 cut(s)	2, 452
BstX2I	RGATCY	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	29
BtgI	CCRYGG	2 cut(s)	282, 340
BtrI	CACGTC	1 cut(s)	527
BtsCI	GGATG	2 cut(s)	278, 502
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	77, 296
Cac8I	GCNNGC	2 cut(s)	20, 24
CaiI	CAGNNNCTG	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	196, 490
CviAII	CATG	7 cut(s)	6, 11, 283, 310, 341, 594, 604
CviJI	RGCY	7 cut(s)	15, 50, 287, 333, 443, 553, 580
CviKI_1	RGCY	7 cut(s)	15, 50, 287, 333, 443, 553, 580
CviQI	GTAC	2 cut(s)	196, 490
DdeI	CTNAG	5 cut(s)	69, 163, 189, 273, 549
DpnI	GATC	2 cut(s)	31, 106
DpnII	GATC	2 cut(s)	29, 104
Ecl136II	GAGCTC	1 cut(s)	553
Eco130I	CCWWGG	2 cut(s)	282, 340
Eco24I	GRGCYC	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	553
EcoO109I	RGGNCCY	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	282, 340
EcoT38I	GRGCYC	1 cut(s)	555
ErhI	CCWWGG	2 cut(s)	282, 340
FaeI	CATG	7 cut(s)	9, 14, 286, 313, 344, 597, 607
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	7 cut(s)	5, 10, 282, 309, 340, 593, 603
FauI	CCCGC	1 cut(s)	41
FblI	GTMKAC	1 cut(s)	119
Fnu4HI	GCNGC	2 cut(s)	16, 441
FokI	GGATG	2 cut(s)	265, 509
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	2 cut(s)	16, 441
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	2 cut(s)	16, 441
GsaI	CCCAGC	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	456
HapII	CCGG	3 cut(s)	47, 76, 179
Hin1II	CATG	7 cut(s)	9, 14, 286, 313, 344, 597, 607
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HinfI	GANTC	4 cut(s)	84, 121, 171, 356
HpaII	CCGG	3 cut(s)	47, 76, 179
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	3 cut(s)	192, 417, 550
Hpy188III	TCNNGA	4 cut(s)	108, 353, 425, 435
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	559
HpyCH4IV	ACGT	2 cut(s)	198, 526
HpyCH4V	TGCA	2 cut(s)	26, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 293
HpyF3I	CTNAG	5 cut(s)	69, 163, 189, 273, 549
HpySE526I	ACGT	2 cut(s)	198, 526
Hsp92II	CATG	7 cut(s)	9, 14, 286, 313, 344, 597, 607
Kzo9I	GATC	2 cut(s)	29, 104
LmnI	GCTCC	5 cut(s)	149, 263, 311, 437, 558
Lsp1109I	GCAGC	2 cut(s)	2, 452
LweI	GCATC	2 cut(s)	45, 287
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	2 cut(s)	198, 526
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	31, 106
MboI	GATC	2 cut(s)	29, 104
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	4 cut(s)	230, 260, 308, 555
MluCI	AATT	2 cut(s)	379, 409
MlyI	GAGTC	3 cut(s)	78, 115, 365
MnlI	CCTC	7 cut(s)	67, 147, 215, 232, 268, 271, 369
MseI	TTAA	3 cut(s)	402, 467, 573
MslI	CAYNNNNRTG	2 cut(s)	301, 314
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	3 cut(s)	47, 76, 179
MwoI	GCNNNNNNNGC	2 cut(s)	284, 293
NcoI	CCATGG	2 cut(s)	282, 340
NdeII	GATC	2 cut(s)	29, 104
NlaIII	CATG	7 cut(s)	9, 14, 286, 313, 344, 597, 607
NlaIV	GGNNCC	1 cut(s)	98
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	2 cut(s)	9, 597
OliI	CACNNNNGTG	1 cut(s)	301
PciI	ACATGT	1 cut(s)	593
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	17, 442
PleI	GAGTC	3 cut(s)	78, 115, 364
PpsI	GAGTC	3 cut(s)	78, 115, 364
Ppu21I	YACGTR	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	241
PscI	ACATGT	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	443
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	241
PspPPI	RGGWCCY	1 cut(s)	241
PstNI	CAGNNNCTG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	197, 491
RsaNI	GTAC	2 cut(s)	196, 490
RseI	CAYNNNNRTG	2 cut(s)	301, 314
SacI	GAGCTC	1 cut(s)	555
SalI	GTCGAC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	402, 467, 573
SatI	GCNGC	2 cut(s)	16, 441
Sau3AI	GATC	2 cut(s)	29, 104
Sau96I	GGNCC	1 cut(s)	241
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	3 cut(s)	78, 115, 365
SduI	GDGCHC	4 cut(s)	230, 260, 308, 555
SfaNI	GCATC	2 cut(s)	45, 287
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	2 cut(s)	301, 314
SmlI	CTYRAG	2 cut(s)	236, 485
SmoI	CTYRAG	2 cut(s)	236, 485
Sse9I	AATT	2 cut(s)	379, 409
SsiI	CCGC	2 cut(s)	34, 301
SspMI	CTAG	1 cut(s)	522
SstI	GAGCTC	1 cut(s)	555
StyI	CCWWGG	2 cut(s)	282, 340
TaiI	ACGT	2 cut(s)	201, 529
TaqI	TCGA	3 cut(s)	119, 478, 534
TasI	AATT	2 cut(s)	379, 409
TatI	WGTACW	1 cut(s)	489
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	3 cut(s)	402, 467, 573
Tru9I	TTAA	3 cut(s)	402, 467, 573
TscAI	CASTG	2 cut(s)	77, 303
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	15, 440
Tsp45I	GTSAC	1 cut(s)	268
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	2 cut(s)	77, 303
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	2 cut(s)	9, 597
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	1 cut(s)	522
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.