Rorug01G0460700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002120
Physical Location & Seq
Forward (+)
55413603 .. 55414724
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0460700.1

Sequence Viewer

Length: 1122 bp
ATGGCGCCGCTAGTGAGTATGGAAGACTTCATAGAAAAACAACTTCGACCTGGTTCAACCTTGAATATTTTGGGTCAGGTTGCTTTTGTTGCACGGGAGCAACTCAAGCAAAGGAGGAAGGAGAAAAGTATTAAAGTCAAAACTCAGATGGGTAGTAGTACTAGTAGTACCCCCAAGGTTAAAGAGCCCAATTATGTAGCTGAAACATATTCCAAAGAGACGGATGCTGATATGAACAAAAGAAAGAGTCGAGAGGTCGACGATGTTGATCATCATGACAAGGGTTTTCAATTGAAACAACGGAAGACAATTTTTTTGCACGAGGAATTTGGTACTACCTCCAAGACTAAAGAACCAAATTCATCAATGGGTAAAGAATTTGAGGCGGATGCTTTATACTCGGTTGGCACAATAAGGAGAGACAGGTCTTTCCTTAGGACAAATTATATAACGAGCTCTGATTCAGGGTTTCAGGAAAAAAATGGGTTGACAAAGAAGAAGAGTATCGATGGTGGTGAGGATGGTAAAGCTTGGAGTTTGAAGCCCAAGCCGAAGAATATGAAGATTAAGAAGGAAAAGGGGTTGGGATTCAAGAGGCCTAAGGAGCATATGAGAGCACCAAGATATAGTACTGATCCTAATGACTTGCCTGAAGACTTGAAAAGGAAGATTGGAACTTTGGAAGGTATTGAAAGTTTTGAAAAGGCTAAGATGACTATGGTGATAGAGAAGCGTCTGTTCGAGACTGATCTGACTGATAGCGCAAGCCGATTGTCAATGCCTCTGAAACAAATCAAACCGGAGAGTTTCTTGGACGAGGATGAGATAAAGTTTCTTGCATCTCAACAAGACTGGCCGGTTTCGGTTATAAGTCCCGAACTTAAGGACGAAAATCTAACTTTCAGGCAATGGAATATGAATAAGAATAACGGCAACGTTAGCTCAAGTTATGTGTTGAAAACAGGTTGGAACGAACTTCACAAGAAAAACGGTCTCCAAGTAAATGATGTAATCCAAGTTTGGTCATTTCGAGATGTGGGAAACAACCTTCACTTTGCTCTTGTTCTGGTTGAGAAGGCAACAGAGGGCGGTTTAAGTAGTGGTGGTGATCGGTGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

373

Amino Acids

42.48

Weight (kDa)

9.29

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g31720-like PF03754 237 - 326 2.1e-15 B3 domain-containing protein At2g31720-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 869
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 258
AciI CCGC 3 cut(s) 8, 386, 1089
AclI AACGTT 1 cut(s) 936
AclWI GGATC 1 cut(s) 629
AcoI YGGCCR 1 cut(s) 854
AcsI RAATTY 3 cut(s) 326, 358, 377
AcuI CTGAAG 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 160, 169, 334, 631
AflII CTTAAG 1 cut(s) 881
AhlI ACTAGT 1 cut(s) 161
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 4 cut(s) 200, 456, 530, 942
AluI AGCT 4 cut(s) 200, 456, 530, 942
Alw21I GWGCWC 2 cut(s) 458, 619
Alw26I GTCTC 4 cut(s) 212, 414, 737, 998
AlwI GGATC 1 cut(s) 629
AoxI GGCC 2 cut(s) 596, 854
ApoI RAATTY 3 cut(s) 326, 358, 377
ArsI GACNNNNNNTTYG 2 cut(s) 298, 330
AspLEI GCGC 2 cut(s) 7, 764
AsuHPI GGTGA 3 cut(s) 527, 733, 1118
AxyI CCTNAGG 2 cut(s) 434, 600
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 189, 458
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 3 cut(s) 30, 311, 660
Bbv12I GWGCWC 2 cut(s) 458, 619
BccI CCATC 3 cut(s) 142, 503, 515
BceAI ACGGC 1 cut(s) 946
BciT130I CCWGG 1 cut(s) 51
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 4 cut(s) 212, 414, 737, 998
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 2 cut(s) 11, 162
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 881
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
BmcAI AGTACT 2 cut(s) 160, 631
Bme1390I CCNGG 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 3 cut(s) 214, 379, 848
BpiI GAAGAC 3 cut(s) 30, 311, 660
BpuEI CTTGAG 2 cut(s) 89, 928
Bsa29I ATCGAT 1 cut(s) 507
BsaBI GATNNNNATC 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 998
BsaJI CCNNGG 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 799
Bse118I RCCGGY 1 cut(s) 856
Bse1I ACTGG 1 cut(s) 857
Bse21I CCTNAGG 2 cut(s) 434, 600
Bse3DI GCAATG 1 cut(s) 914
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 4 cut(s) 229, 394, 526, 826
BseJI GATNNNNATC 1 cut(s) 267
BseMI GCAATG 1 cut(s) 914
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 857
BshFI GGCC 2 cut(s) 598, 856
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 507
BsiHKAI GWGCWC 2 cut(s) 458, 619
BsiSI CCGG 2 cut(s) 800, 857
BslFI GGGAC 1 cut(s) 858
BsmAI GTCTC 4 cut(s) 212, 414, 737, 998
BsmBI CGTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 858
BsnI GGCC 2 cut(s) 598, 856
Bso31I GGTCTC 1 cut(s) 998
Bsp1286I GDGCHC 3 cut(s) 189, 458, 619
Bsp143I GATC 4 cut(s) 268, 634, 748, 1108
BspACI CCGC 3 cut(s) 8, 386, 1089
BspANI GGCC 2 cut(s) 598, 856
BspCNI CTCAG 1 cut(s) 157
BspDI ATCGAT 1 cut(s) 507
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 629
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 881
BspTNI GGTCTC 1 cut(s) 998
BsrDI GCAATG 1 cut(s) 914
BsrFI RCCGGY 1 cut(s) 856
BsrI ACTGG 1 cut(s) 857
BssAI RCCGGY 1 cut(s) 856
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 4 cut(s) 268, 634, 748, 1108
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 174
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 992
Bst6I CTCTTC 1 cut(s) 494
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 881
BstC8I GCNNGC 1 cut(s) 766
BstDEI CTNAG 4 cut(s) 144, 434, 600, 708
BstF5I GGATG 4 cut(s) 229, 394, 526, 826
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 764
BstKTI GATC 4 cut(s) 271, 637, 751, 1111
BstMAI GTCTC 4 cut(s) 212, 414, 737, 998
BstMBI GATC 4 cut(s) 268, 634, 748, 1108
BstMWI GCNNNNNNNGC 4 cut(s) 89, 106, 604, 939
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 1120
BstSCI CCNGG 1 cut(s) 49
BstV2I GAAGAC 3 cut(s) 30, 311, 660
Bsu15I ATCGAT 1 cut(s) 507
Bsu36I CCTNAGG 2 cut(s) 434, 600
BsuRI GGCC 2 cut(s) 598, 856
BsuTUI ATCGAT 1 cut(s) 507
BtsCI GGATG 4 cut(s) 229, 394, 526, 826
Cac8I GCNNGC 1 cut(s) 766
CciI TCATGA 1 cut(s) 274
CfoI GCGC 2 cut(s) 7, 764
Cfr10I RCCGGY 1 cut(s) 856
ClaI ATCGAT 1 cut(s) 507
CseI GACGC 1 cut(s) 722
CsiI ACCWGGT 1 cut(s) 49
Csp6I GTAC 4 cut(s) 159, 168, 333, 630
CviAII CATG 2 cut(s) 275, 1117
CviQI GTAC 4 cut(s) 159, 168, 333, 630
DdeI CTNAG 4 cut(s) 144, 434, 600, 708
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 270, 636, 750, 1110
DpnII GATC 4 cut(s) 268, 634, 748, 1108
EaeI YGGCCR 1 cut(s) 854
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
EciI GGCGGA 1 cut(s) 401
Ecl136II GAGCTC 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 598
Eco24I GRGCYC 2 cut(s) 189, 458
Eco31I GGTCTC 1 cut(s) 998
Eco53kI GAGCTC 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 672
Eco81I CCTNAGG 2 cut(s) 434, 600
EcoICRI GAGCTC 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 2 cut(s) 189, 458
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 2 cut(s) 278, 1120
FaqI GGGAC 1 cut(s) 858
FatI CATG 2 cut(s) 274, 1116
FauNDI CATATG 1 cut(s) 609
FbaI TGATCA 1 cut(s) 268
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 4 cut(s) 236, 401, 533, 833
FriOI GRGCYC 2 cut(s) 189, 458
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 2 cut(s) 11, 162
GlaI GCGC 2 cut(s) 6, 763
GluI GCNGC 1 cut(s) 8
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 598, 856
HapII CCGG 2 cut(s) 800, 857
HgaI GACGC 1 cut(s) 722
HhaI GCGC 2 cut(s) 7, 764
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 278, 1120
Hin6I GCGC 2 cut(s) 5, 762
HinP1I GCGC 2 cut(s) 5, 762
HincII GTYRAC 2 cut(s) 259, 489
HindII GTYRAC 2 cut(s) 259, 489
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 3 cut(s) 247, 461, 588
HpaII CCGG 2 cut(s) 800, 857
HphI GGTGA 3 cut(s) 527, 733, 1118
Hpy166II GTNNAC 2 cut(s) 259, 489
Hpy188I TCNGA 4 cut(s) 147, 460, 753, 786
Hpy188III TCNNGA 7 cut(s) 251, 275, 473, 592, 742, 875, 1031
Hpy8I GTNNAC 2 cut(s) 259, 489
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 5 cut(s) 112, 565, 677, 1058, 1069
HpyCH4III ACNGT 1 cut(s) 992
HpyCH4IV ACGT 1 cut(s) 936
HpyCH4V TGCA 4 cut(s) 92, 319, 839, 1116
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 106, 604, 939
HpyF3I CTNAG 4 cut(s) 144, 434, 600, 708
HpySE526I ACGT 1 cut(s) 936
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 278, 1120
HspAI GCGC 2 cut(s) 5, 762
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 4 cut(s) 268, 634, 748, 1108
LmnI GCTCC 2 cut(s) 97, 604
LweI GCATC 3 cut(s) 214, 379, 848
MabI ACCWGGT 1 cut(s) 49
MaeI CTAG 2 cut(s) 11, 162
MaeII ACGT 1 cut(s) 936
MalI GATC 4 cut(s) 270, 636, 750, 1110
MboI GATC 4 cut(s) 268, 634, 748, 1108
MboII GAAGA 8 cut(s) 35, 316, 508, 511, 565, 574, 665, 679
MfeI CAATTG 1 cut(s) 290
MhlI GDGCHC 3 cut(s) 189, 458, 619
MluCI AATT 7 cut(s) 190, 290, 309, 326, 358, 377, 442
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 947
MseI TTAA 5 cut(s) 132, 180, 567, 882, 1094
MspCI CTTAAG 1 cut(s) 881
MspI CCGG 2 cut(s) 800, 857
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 4 cut(s) 89, 106, 604, 939
NarI GGCGCC 1 cut(s) 5
NdeI CATATG 1 cut(s) 609
NdeII GATC 4 cut(s) 268, 634, 748, 1108
NlaIII CATG 2 cut(s) 278, 1120
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 1120
PagI TCATGA 1 cut(s) 274
PceI AGGCCT 1 cut(s) 598
PfeI GAWTC 2 cut(s) 461, 588
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 255
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 255
PsiI TTATAA 1 cut(s) 869
Psp124BI GAGCTC 1 cut(s) 458
Psp1406I AACGTT 1 cut(s) 936
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 6
RsaI GTAC 4 cut(s) 160, 169, 334, 631
RsaNI GTAC 4 cut(s) 159, 168, 333, 630
SacI GAGCTC 1 cut(s) 458
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 5 cut(s) 132, 180, 567, 882, 1094
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 4 cut(s) 268, 634, 748, 1108
ScaI AGTACT 2 cut(s) 160, 631
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 3 cut(s) 189, 458, 619
SexAI ACCWGGT 1 cut(s) 49
SfaNI GCATC 3 cut(s) 214, 379, 848
SfoI GGCGCC 1 cut(s) 6
SmlI CTYRAG 3 cut(s) 104, 881, 943
SmoI CTYRAG 3 cut(s) 104, 881, 943
SpeI ACTAGT 1 cut(s) 161
Sse9I AATT 7 cut(s) 190, 290, 309, 326, 358, 377, 442
SseBI AGGCCT 1 cut(s) 598
SsiI CCGC 3 cut(s) 8, 386, 1089
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 67
SspMI CTAG 2 cut(s) 11, 162
SstI GAGCTC 1 cut(s) 458
StuI AGGCCT 1 cut(s) 598
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 992
TaiI ACGT 1 cut(s) 939
TaqI TCGA 6 cut(s) 46, 250, 258, 507, 741, 1030
TasI AATT 7 cut(s) 190, 290, 309, 326, 358, 377, 442
TatI WGTACW 2 cut(s) 158, 629
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 2 cut(s) 461, 588
Tru1I TTAA 5 cut(s) 132, 180, 567, 882, 1094
Tru9I TTAA 5 cut(s) 132, 180, 567, 882, 1094
TspDTI ATGAA 5 cut(s) 19, 248, 351, 575, 932
TspGWI ACGGA 2 cut(s) 236, 316
Vha464I CTTAAG 1 cut(s) 881
XapI RAATTY 3 cut(s) 326, 358, 377
XceI RCATGY 1 cut(s) 1120
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 2 cut(s) 11, 162
ZrmI AGTACT 2 cut(s) 160, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.