Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000689.1

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Forward (+)

23989 .. 24703

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000689.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgaagctaatgttatcttgcatttatttattcgtgtttgattcattttggttttggtttggatttttgtggaaatggaatgaggaattgaaaagtgggaaggttttggttgtgggtttttattgtcgaggtgtggtgtggggattagcagggtgcccaaaccttgaggttctttcgatcaagtgctgcccgaatgtgactgatgcattcatcgctgacatagagtttcagtgcaccatgattaaggaacttgacatcagctattgccatgaaatatctccggagtctctggtgttgattgggaagaattgccctaatctcacaattgttaaatggaatgcattgaatttgctagctccttctgaacacgctgggattgttcctcaagatggaaattcagaagttgatgcaattggcaattcagagcacaacatgttggttaggatatggaagtggagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

153

Amino Acids

17.41

Weight (kDa)

5.1

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AccIII	TCCGGA	1 cut(s)	280
AcsI	RAATTY	2 cut(s)	346, 394
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	91, 346
AluBI	AGCT	4 cut(s)	7, 261, 356, 459
AluI	AGCT	4 cut(s)	7, 261, 356, 459
Alw21I	GWGCWC	2 cut(s)	236, 429
Alw26I	GTCTC	1 cut(s)	291
Alw44I	GTGCAC	1 cut(s)	232
Aor13HI	TCCGGA	1 cut(s)	280
ApaLI	GTGCAC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	186
ApoI	RAATTY	2 cut(s)	346, 394
AsuNHI	GCTAGC	1 cut(s)	352
BaeGI	GKGCMC	2 cut(s)	158, 236
BanI	GGYRCC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	236, 429
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	1 cut(s)	353
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	155
BmsI	GCATC	2 cut(s)	193, 397
BmtI	GCTAGC	1 cut(s)	356
BpuEI	CTTGAG	2 cut(s)	185, 369
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
BseAI	TCCGGA	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseSI	GKGCMC	2 cut(s)	158, 236
BseXI	GCAGC	1 cut(s)	173
BseYI	CCCAGC	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	236, 429
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	291
BsmI	GAATGC	2 cut(s)	206, 343
Bsp1286I	GDGCHC	3 cut(s)	158, 236, 429
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	177
BspEI	TCCGGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	155
BspOI	GCTAGC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	153
BssMI	GATC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	354
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	436
BstSLI	GKGCMC	2 cut(s)	158, 236
BstV1I	GCAGC	1 cut(s)	173
BtgZI	GCGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	354
CviAII	CATG	3 cut(s)	238, 269, 433
CviJI	RGCY	4 cut(s)	7, 261, 356, 459
CviKI_1	RGCY	4 cut(s)	7, 261, 356, 459
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
EcoT22I	ATGCAT	2 cut(s)	208, 343
FaeI	CATG	3 cut(s)	241, 272, 436
FaiI	YATR	5 cut(s)	221, 239, 270, 434, 448
FatI	CATG	3 cut(s)	237, 268, 432
Fnu4HI	GCNGC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	1 cut(s)	187
GsaI	CCCAGC	1 cut(s)	375
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	3 cut(s)	241, 272, 436
HinfI	GANTC	2 cut(s)	41, 284
HpaII	CCGG	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	3 cut(s)	364, 400, 424
Hpy188III	TCNNGA	2 cut(s)	281, 386
Hpy8I	GTNNAC	1 cut(s)	234
HpyAV	CCTTC	2 cut(s)	94, 369
HpyCH4V	TGCA	5 cut(s)	21, 206, 234, 341, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	241, 272, 436
Kpn2I	TCCGGA	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	361, 456
LpnPI	CCDG	4 cut(s)	135, 275, 294, 357
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	2 cut(s)	193, 397
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	1 cut(s)	316
MfeI	CAATTG	2 cut(s)	324, 411
MhlI	GDGCHC	3 cut(s)	158, 236, 429
MluCI	AATT	7 cut(s)	86, 307, 324, 346, 394, 411, 418
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	4 cut(s)	76, 122, 160, 393
Mph1103I	ATGCAT	2 cut(s)	208, 343
MroI	TCCGGA	1 cut(s)	280
MseI	TTAA	2 cut(s)	243, 330
MspI	CCGG	1 cut(s)	281
MunI	CAATTG	2 cut(s)	324, 411
Mva1269I	GAATGC	2 cut(s)	206, 343
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	177
NheI	GCTAGC	1 cut(s)	352
NlaIII	CATG	3 cut(s)	241, 272, 436
NlaIV	GGNNCC	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	196
NsiI	ATGCAT	2 cut(s)	208, 343
NspI	RCATGY	1 cut(s)	436
PciI	ACATGT	1 cut(s)	432
PctI	GAATGC	2 cut(s)	206, 343
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PscI	ACATGT	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	243, 330
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	293
SduI	GDGCHC	3 cut(s)	158, 236, 429
SetI	ASST	8 cut(s)	9, 105, 133, 165, 171, 263, 358, 461
SfaNI	GCATC	2 cut(s)	193, 397
SmlI	CTYRAG	2 cut(s)	164, 384
SmoI	CTYRAG	2 cut(s)	164, 384
Sse9I	AATT	7 cut(s)	86, 307, 324, 346, 394, 411, 418
SspMI	CTAG	1 cut(s)	353
TaqI	TCGA	2 cut(s)	127, 176
TasI	AATT	7 cut(s)	86, 307, 324, 346, 394, 411, 418
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	243, 330
Tru9I	TTAA	2 cut(s)	243, 330
TscAI	CASTG	1 cut(s)	236
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	4 cut(s)	17, 33, 199, 285
TspRI	CASTG	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	346, 394
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	1 cut(s)	353
Zsp2I	ATGCAT	2 cut(s)	208, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.