Rh2AG009000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002120
Physical Location & Seq
Reverse (-)
803577 .. 806569
2993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG009000.1

Sequence Viewer

Length: 939 bp
ATGGACCGAACCAATAATGAAGAAGAAGAAGAAGAAGAACCACCAGTCTGCGACTGGGCCGGGTTGACCTACGTGTGCCTCGCCAACATCCTCGCCCGGCTTCCCTTGGAGCACCGATGGCGTGCGATGCTCCTCTGCAAATCATGGCTGCTCGCCTGCAAGGACCCGCATCTCAACTCGCGCTTCGTCCTCGAGCCCGAGCCCAAGCCCAAGCGCGAGTACGGGTCGGCTCAGTGGTGGGGCCCCGAGTTGGGGAGAAGGGTCGATTCCATGCTCCGATCTGTTGCTGAATGGAGCGAGGGGTCGCTTAGGGAGATTCGCACCCGGAACTGCTCTAATGAATCTCTCCATTTCGTCGCCCAAAGGTGCCCAAACCTTGAGGTTCTTTCGATCAAGTGCTGCCCGAATGTGACTGATGCATCCATGGCTGACATAGCGTTTCGGTGCATCATGATTAAGGAACTTGACATCAGCTATTGCCATGAAATATCTCACGAGTCTCTGGTGTTGATTGGGAAGAATTGCCCTAATCTCACAGTTGTTAAACGGAATGCGTTGAATTTGCTGGATCCTTCTGAACACGCTGGGATTATTCCTGAGGAGTATTTAAAAACTTGCCCTCAAGATGGAAATTCAGAAGCTGATGCAATTGGCAAATCTATGCCGAATCTCAAACACCTTGAACTAAGGTTCTCCAAGGTAACAGCTAAAGGCCTTGGTTTGATATCTGCAGGGTGTCTGAAACTTGAGTACTTGGATGTGTTTGGGTGTGTAAACTTGAATAGTCGTGATATCAACAATGCAACATCTGAGCTGAAGAACTTGAAGGAGATTAAAAAGCCAAATTTCTACATCCCTAGGTCGGTTTTCCATTCGGAGAGGTATGGACATTGGAGGCTGTATGATGAGAGATTTCAAACAGATATTTTCAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

312

Amino Acids

35.79

Weight (kDa)

6.18

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 21 - 59 1e-05 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 366
AccII CGCG 2 cut(s) 181, 216
AciI CCGC 1 cut(s) 167
AclWI GGATC 2 cut(s) 563, 576
AcsI RAATTY 3 cut(s) 559, 631, 844
AcuI CTGAAG 1 cut(s) 836
AfaI GTAC 2 cut(s) 221, 752
AfiI CCNNNNNNNGG 5 cut(s) 250, 251, 252, 626, 862
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 5 cut(s) 559, 683, 781, 826, 917
AluBI AGCT 4 cut(s) 474, 641, 707, 814
AluI AGCT 4 cut(s) 474, 641, 707, 814
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 504
AlwI GGATC 2 cut(s) 563, 576
AlwNI CAGNNNCTG 1 cut(s) 641
Ama87I CYCGRG 3 cut(s) 191, 197, 245
AoxI GGCC 3 cut(s) 57, 241, 712
ApaI GGGCCC 1 cut(s) 245
ApeKI GCWGC 2 cut(s) 148, 399
ApoI RAATTY 3 cut(s) 559, 631, 844
AspA2I CCTAGG 1 cut(s) 857
AspLEI GCGC 2 cut(s) 183, 216
AspS9I GGNCC 5 cut(s) 4, 57, 163, 241, 242
AsuC2I CCSGG 3 cut(s) 61, 97, 325
AvaI CYCGRG 3 cut(s) 191, 197, 245
AvaII GGWCC 2 cut(s) 4, 163
AvrII CCTAGG 1 cut(s) 857
AxyI CCTNAGG 1 cut(s) 597
BaeGI GKGCMC 2 cut(s) 245, 371
BamHI GGATCC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 366
BanII GRGCYC 3 cut(s) 198, 204, 245
BauI CACGAG 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 135, 386
BccI CCATC 2 cut(s) 111, 620
BcnI CCSGG 3 cut(s) 61, 97, 325
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 1 cut(s) 858
BfmI CTRYAG 1 cut(s) 729
BisI GCNGC 2 cut(s) 149, 400
BlnI CCTAGG 1 cut(s) 857
BlsI GCNGC 2 cut(s) 150, 401
BmcAI AGTACT 1 cut(s) 752
Bme1390I CCNGG 3 cut(s) 61, 97, 325
Bme18I GGWCC 2 cut(s) 4, 163
BmeT110I CYCGRG 3 cut(s) 191, 197, 245
BmgT120I GGNCC 5 cut(s) 4, 57, 163, 241, 242
BmiI GGNNCC 6 cut(s) 165, 242, 243, 244, 368, 570
BmrFI CCNGG 3 cut(s) 61, 97, 325
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 6 cut(s) 117, 178, 406, 428, 456, 634
BmuI ACTGGG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 3 cut(s) 398, 606, 767
BpuMI CCSGG 3 cut(s) 61, 97, 325
BsaAI YACGTR 1 cut(s) 73
BsaJI CCNNGG 5 cut(s) 105, 423, 696, 715, 857
Bsc4I CCNNNNNNNGG 5 cut(s) 250, 251, 252, 626, 862
Bse1I ACTGG 2 cut(s) 44, 59
Bse21I CCTNAGG 1 cut(s) 597
BseDI CCNNGG 5 cut(s) 105, 423, 696, 715, 857
BseGI GGATG 4 cut(s) 87, 419, 763, 852
BseLI CCNNNNNNNGG 5 cut(s) 250, 251, 252, 626, 862
BseMII CTCAG 3 cut(s) 245, 588, 801
BseNI ACTGG 2 cut(s) 44, 59
BseRI GAGGAG 2 cut(s) 122, 614
BseSI GKGCMC 2 cut(s) 245, 371
BseXI GCAGC 2 cut(s) 135, 386
BseYI CCCAGC 1 cut(s) 584
Bsh1236I CGCG 2 cut(s) 181, 216
BshFI GGCC 3 cut(s) 59, 243, 714
BshNI GGYRCC 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 3 cut(s) 191, 197, 245
BsiSI CCGG 3 cut(s) 60, 97, 325
BslI CCNNNNNNNGG 5 cut(s) 250, 251, 252, 626, 862
BsmAI GTCTC 1 cut(s) 504
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 3 cut(s) 59, 243, 714
BsoBI CYCGRG 3 cut(s) 191, 197, 245
Bsp120I GGGCCC 1 cut(s) 241
Bsp1286I GDGCHC 5 cut(s) 114, 198, 204, 245, 371
Bsp143I GATC 3 cut(s) 278, 390, 568
Bsp19I CCATGG 1 cut(s) 423
BspACI CCGC 1 cut(s) 167
BspANI GGCC 3 cut(s) 59, 243, 714
BspCNI CTCAG 3 cut(s) 244, 589, 802
BspFNI CGCG 2 cut(s) 181, 216
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 6 cut(s) 165, 242, 243, 244, 368, 570
BspMAI CTGCAG 1 cut(s) 733
BspPI GGATC 2 cut(s) 563, 576
BspT107I GGYRCC 1 cut(s) 366
BsrI ACTGG 2 cut(s) 44, 59
BssECI CCNNGG 5 cut(s) 105, 423, 696, 715, 857
BssMI GATC 3 cut(s) 278, 390, 568
BssSI CACGAG 1 cut(s) 494
BssT1I CCWWGG 5 cut(s) 105, 423, 696, 715, 857
Bst2BI CACGAG 1 cut(s) 494
Bst4CI ACNGT 1 cut(s) 538
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 3 cut(s) 123, 153, 157
BstDEI CTNAG 5 cut(s) 231, 308, 597, 686, 810
BstDSI CCRYGG 1 cut(s) 423
BstF5I GGATG 4 cut(s) 87, 419, 763, 852
BstFNI CGCG 2 cut(s) 181, 216
BstHHI GCGC 2 cut(s) 183, 216
BstKTI GATC 3 cut(s) 281, 393, 571
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 3 cut(s) 278, 390, 568
BstMWI GCNNNNNNNGC 4 cut(s) 118, 127, 425, 434
BstSCI CCNGG 3 cut(s) 59, 95, 323
BstSFI CTRYAG 1 cut(s) 729
BstSLI GKGCMC 2 cut(s) 245, 371
BstUI CGCG 2 cut(s) 181, 216
BstV1I GCAGC 2 cut(s) 135, 386
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
Bsu36I CCTNAGG 1 cut(s) 597
BsuRI GGCC 3 cut(s) 59, 243, 714
BtgI CCRYGG 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 140
BtsCI GGATG 4 cut(s) 87, 419, 763, 852
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 3 cut(s) 123, 153, 157
CaiI CAGNNNCTG 1 cut(s) 641
CciI TCATGA 1 cut(s) 450
CfoI GCGC 2 cut(s) 183, 216
Cfr13I GGNCC 5 cut(s) 4, 57, 163, 241, 242
Csp6I GTAC 2 cut(s) 220, 751
CviAII CATG 5 cut(s) 144, 271, 424, 451, 482
CviQI GTAC 2 cut(s) 220, 751
DdeI CTNAG 5 cut(s) 231, 308, 597, 686, 810
DpnI GATC 3 cut(s) 280, 392, 570
DpnII GATC 3 cut(s) 278, 390, 568
DraI TTTAAA 1 cut(s) 609
Eco130I CCWWGG 5 cut(s) 105, 423, 696, 715, 857
Eco147I AGGCCT 1 cut(s) 714
Eco24I GRGCYC 3 cut(s) 198, 204, 245
Eco32I GATATC 2 cut(s) 726, 793
Eco47I GGWCC 2 cut(s) 4, 163
Eco57I CTGAAG 1 cut(s) 836
Eco81I CCTNAGG 1 cut(s) 597
Eco88I CYCGRG 3 cut(s) 191, 197, 245
EcoO109I RGGNCCY 3 cut(s) 163, 241, 242
EcoRV GATATC 2 cut(s) 726, 793
EcoT14I CCWWGG 5 cut(s) 105, 423, 696, 715, 857
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 3 cut(s) 198, 204, 245
ErhI CCWWGG 5 cut(s) 105, 423, 696, 715, 857
FaeI CATG 5 cut(s) 147, 274, 427, 454, 485
FaiI YATR 9 cut(s) 145, 272, 425, 434, 452, 483, 662, 885, 903
FatI CATG 5 cut(s) 143, 270, 423, 450, 481
FauI CCCGC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 149, 400
FokI GGATG 4 cut(s) 74, 406, 770, 839
FriOI GRGCYC 3 cut(s) 198, 204, 245
Fsp4HI GCNGC 2 cut(s) 149, 400
FspBI CTAG 1 cut(s) 858
GlaI GCGC 2 cut(s) 182, 215
GluI GCNGC 2 cut(s) 149, 400
GsaI CCCAGC 1 cut(s) 588
HaeIII GGCC 3 cut(s) 59, 243, 714
HapII CCGG 3 cut(s) 60, 97, 325
HhaI GCGC 2 cut(s) 183, 216
Hin1II CATG 5 cut(s) 147, 274, 427, 454, 485
Hin6I GCGC 2 cut(s) 181, 214
HinP1I GCGC 2 cut(s) 181, 214
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 6 cut(s) 266, 316, 341, 497, 667, 933
HpaII CCGG 3 cut(s) 60, 97, 325
Hpy166II GTNNAC 2 cut(s) 66, 775
Hpy188I TCNGA 7 cut(s) 278, 577, 637, 741, 811, 877, 932
Hpy188III TCNNGA 5 cut(s) 451, 494, 596, 623, 788
Hpy8I GTNNAC 2 cut(s) 66, 775
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 3 cut(s) 252, 582, 820
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 7 cut(s) 138, 159, 419, 447, 647, 731, 803
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 127, 425, 434
HpyF3I CTNAG 5 cut(s) 231, 308, 597, 686, 810
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 5 cut(s) 147, 274, 427, 454, 485
HspAI GCGC 2 cut(s) 181, 214
Kzo9I GATC 3 cut(s) 278, 390, 568
LmnI GCTCC 4 cut(s) 109, 135, 279, 294
Lsp1109I GCAGC 2 cut(s) 135, 386
LweI GCATC 6 cut(s) 117, 178, 406, 428, 456, 634
MaeI CTAG 1 cut(s) 858
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 409, 700
MalI GATC 3 cut(s) 280, 392, 570
MboI GATC 3 cut(s) 278, 390, 568
MboII GAAGA 8 cut(s) 32, 35, 38, 41, 44, 47, 529, 829
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 5 cut(s) 114, 198, 204, 245, 371
MluCI AATT 5 cut(s) 520, 559, 631, 648, 844
MlyI GAGTC 1 cut(s) 506
Mph1103I ATGCAT 1 cut(s) 421
MseI TTAA 4 cut(s) 456, 543, 608, 834
MspI CCGG 3 cut(s) 60, 97, 325
MspR9I CCNGG 3 cut(s) 61, 97, 325
MunI CAATTG 1 cut(s) 648
Mva1269I GAATGC 1 cut(s) 556
MvnI CGCG 2 cut(s) 181, 216
MwoI GCNNNNNNNGC 4 cut(s) 118, 127, 425, 434
NciI CCSGG 3 cut(s) 61, 97, 325
NcoI CCATGG 1 cut(s) 423
NdeII GATC 3 cut(s) 278, 390, 568
NlaIII CATG 5 cut(s) 147, 274, 427, 454, 485
NlaIV GGNNCC 6 cut(s) 165, 242, 243, 244, 368, 570
NmuCI GTSAC 1 cut(s) 409
NsiI ATGCAT 1 cut(s) 421
PaeR7I CTCGAG 1 cut(s) 191
PagI TCATGA 1 cut(s) 450
PceI AGGCCT 1 cut(s) 714
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 5 cut(s) 266, 316, 341, 667, 933
PkrI GCNGC 2 cut(s) 150, 401
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
Ppu21I YACGTR 1 cut(s) 73
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 584
PspN4I GGNNCC 6 cut(s) 165, 242, 243, 244, 368, 570
PspOMI GGGCCC 1 cut(s) 241
PspPI GGNCC 5 cut(s) 4, 57, 163, 241, 242
PspPPI RGGWCCY 1 cut(s) 163
PspXI VCTCGAGB 1 cut(s) 191
PstI CTGCAG 1 cut(s) 733
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 2 cut(s) 221, 752
RsaNI GTAC 2 cut(s) 220, 751
SaqAI TTAA 4 cut(s) 456, 543, 608, 834
SatI GCNGC 2 cut(s) 149, 400
Sau3AI GATC 3 cut(s) 278, 390, 568
Sau96I GGNCC 5 cut(s) 4, 57, 163, 241, 242
ScaI AGTACT 1 cut(s) 752
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 3 cut(s) 61, 97, 325
SduI GDGCHC 5 cut(s) 114, 198, 204, 245, 371
SfaNI GCATC 6 cut(s) 117, 178, 406, 428, 456, 634
SfcI CTRYAG 1 cut(s) 729
Sfr274I CTCGAG 1 cut(s) 191
SinI GGWCC 2 cut(s) 4, 163
SlaI CTCGAG 1 cut(s) 191
SmlI CTYRAG 4 cut(s) 191, 377, 621, 746
SmoI CTYRAG 4 cut(s) 191, 377, 621, 746
Sse9I AATT 5 cut(s) 520, 559, 631, 648, 844
SseBI AGGCCT 1 cut(s) 714
SsiI CCGC 1 cut(s) 167
SspMI CTAG 1 cut(s) 858
StuI AGGCCT 1 cut(s) 714
StyD4I CCNGG 3 cut(s) 59, 95, 323
StyI CCWWGG 5 cut(s) 105, 423, 696, 715, 857
TaaI ACNGT 1 cut(s) 538
TaiI ACGT 1 cut(s) 75
TaqI TCGA 3 cut(s) 192, 264, 389
TaqII GACCGA 1 cut(s) 21
TasI AATT 5 cut(s) 520, 559, 631, 648, 844
TatI WGTACW 1 cut(s) 750
TfiI GAWTC 5 cut(s) 266, 316, 341, 667, 933
Tru1I TTAA 4 cut(s) 456, 543, 608, 834
Tru9I TTAA 4 cut(s) 456, 543, 608, 834
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 2 cut(s) 148, 399
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 3 cut(s) 33, 354, 498
TspGWI ACGGA 1 cut(s) 562
TspRI CASTG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 4, 163
XapI RAATTY 3 cut(s) 559, 631, 844
XcmI CCANNNNNNNNNTGG 1 cut(s) 51
XhoI CTCGAG 1 cut(s) 191
XmaJI CCTAGG 1 cut(s) 857
XspI CTAG 1 cut(s) 858
ZrmI AGTACT 1 cut(s) 752
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.