Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

34145653 .. 34146213

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008650

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAATTTTTTCGTGATTGATGTATGGTGCCCAAACCTTGAGGTTCTTTCGATCAAGTGCTGCCCGAATGTGACTGATGCATCCATCGCTGACATAGAGTTTCGGTGCACCATGATTAAGGAACTTGACATCAGCTATTGCCATGAAATATCTCCGGAGTCTTTGGTGTTGATTGGGAAGAATTGCCCTAATCTCACAATTGTTAAATGGAATGCATTGAATTTGCTAGATCCTTCTGAACACACTGGGATTTTTCCTAAGGAGTATTTAAAAACTTGCCCTCAAGATGGAAATTCAGAAGTTGATGCAATTGGCAAATCAGAGCACAACATGTTAGTCATTAGGATATGGAAGTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

121

Amino Acids

13.66

Weight (kDa)

4.9

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	154
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	3 cut(s)	4, 220, 292
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	220
AluBI	AGCT	2 cut(s)	135, 360
AluI	AGCT	2 cut(s)	135, 360
Alw21I	GWGCWC	2 cut(s)	110, 327
Alw44I	GTGCAC	1 cut(s)	106
AlwI	GGATC	1 cut(s)	224
Aor13HI	TCCGGA	1 cut(s)	154
ApaLI	GTGCAC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	60
ApoI	RAATTY	3 cut(s)	4, 220, 292
Asp700I	GAANNNNTTC	1 cut(s)	8
AxyI	CCTNAGG	1 cut(s)	258
BaeGI	GKGCMC	2 cut(s)	32, 110
BanI	GGYRCC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	110, 327
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	2 cut(s)	92, 281
BfaI	CTAG	1 cut(s)	227
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	3 cut(s)	67, 89, 295
BmuI	ACTGGG	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	59, 267
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	250
Bse21I	CCTNAGG	1 cut(s)	258
BseAI	TCCGGA	1 cut(s)	154
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	250
BseSI	GKGCMC	2 cut(s)	32, 110
BseXI	GCAGC	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	110, 327
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	217
Bsp1286I	GDGCHC	3 cut(s)	32, 110, 327
Bsp13I	TCCGGA	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	51, 229
BspEI	TCCGGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	250
BssMI	GATC	2 cut(s)	51, 229
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	80
BstKTI	GATC	2 cut(s)	54, 232
BstMBI	GATC	2 cut(s)	51, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	334
BstSLI	GKGCMC	2 cut(s)	32, 110
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	243
CviAII	CATG	3 cut(s)	112, 143, 331
CviJI	RGCY	2 cut(s)	135, 360
CviKI_1	RGCY	2 cut(s)	135, 360
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	2 cut(s)	53, 231
DpnII	GATC	2 cut(s)	51, 229
DraI	TTTAAA	1 cut(s)	270
Eco81I	CCTNAGG	1 cut(s)	258
EcoT22I	ATGCAT	2 cut(s)	82, 217
FaeI	CATG	3 cut(s)	115, 146, 334
FaiI	YATR	6 cut(s)	25, 95, 113, 144, 332, 349
FatI	CATG	3 cut(s)	111, 142, 330
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	61
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	3 cut(s)	115, 146, 334
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	3 cut(s)	238, 298, 322
Hpy188III	TCNNGA	3 cut(s)	13, 155, 284
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	243
HpyCH4V	TGCA	4 cut(s)	80, 108, 215, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	115, 146, 334
Kpn2I	TCCGGA	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	51, 229
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	2 cut(s)	168, 231
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	3 cut(s)	67, 89, 295
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	53, 231
MboI	GATC	2 cut(s)	51, 229
MboII	GAAGA	1 cut(s)	190
MfeI	CAATTG	2 cut(s)	198, 309
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	3 cut(s)	32, 110, 327
MluCI	AATT	6 cut(s)	4, 181, 198, 220, 292, 309
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	2 cut(s)	34, 291
Mph1103I	ATGCAT	2 cut(s)	82, 217
MroI	TCCGGA	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	117, 204, 269
MspI	CCGG	1 cut(s)	155
MunI	CAATTG	2 cut(s)	198, 309
Mva1269I	GAATGC	1 cut(s)	217
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	2 cut(s)	51, 229
NlaIII	CATG	3 cut(s)	115, 146, 334
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	2 cut(s)	82, 217
NspI	RCATGY	1 cut(s)	334
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PscI	ACATGT	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	229
SaqAI	TTAA	3 cut(s)	117, 204, 269
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	2 cut(s)	51, 229
SchI	GAGTC	1 cut(s)	167
SduI	GDGCHC	3 cut(s)	32, 110, 327
SetI	ASST	4 cut(s)	39, 45, 137, 362
SfaNI	GCATC	3 cut(s)	67, 89, 295
SmlI	CTYRAG	2 cut(s)	38, 282
SmoI	CTYRAG	2 cut(s)	38, 282
Sse9I	AATT	6 cut(s)	4, 181, 198, 220, 292, 309
SspMI	CTAG	1 cut(s)	227
TaqI	TCGA	1 cut(s)	50
TasI	AATT	6 cut(s)	4, 181, 198, 220, 292, 309
Tru1I	TTAA	3 cut(s)	117, 204, 269
Tru9I	TTAA	3 cut(s)	117, 204, 269
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	17, 159
TspRI	CASTG	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	106
XapI	RAATTY	3 cut(s)	4, 220, 292
XceI	RCATGY	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	227
Zsp2I	ATGCAT	2 cut(s)	82, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.