Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000338.1

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Forward (+)

4894 .. 10405

Gene Structure 5512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000338.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgttcgtaccctccacgggtatccaacaccaggcggatccgctattcctcctccctccgacgaagagccgactgatcaaatttgataacttggccaatagcagaaccaatgagattttgttgcgaagtgccaccagcaaacccttttattgcaacccagatctccatctcccacaagggagaagtcttcaccaagccaactccatcgtattcacctaccaacaacatcgtattcctgtagaatcacggcccttcgtgcaacaccctgttacgatctgcttcatggttgaattgaaacagaaaccgatctccagcatcatggacagagagtgtcaggacttgccccggatttcaggccaccacctcatggccaccaaattttggtatcagcttcgtctcgaccatccaaacatttttctcaactatcacaagtccagaaaacaactagctagaactagatcaacaattaaggaaacagtaacccgatttgagttccaaagttcaaaccttccatccattgttttcattgcgttttgtggaagaaagattggagagaggtgcccaaaccttgaggttctttcgatcaagtgctgcccgaatgtgactgatgcatccatcgctgacatagagtttcagtgcaccatgattaaggaacttgacatcagctattgccatgaaatatctccggagtctatggtgttgattgggaataattaccctaatctcacaattgttaaatggaatgcattgaatttgctagctccttctgaacacgctgggattgttcctcaagatggaaattcagaagttgatgcaattggcaattcagagcacaacatgttggttaggatatggaagtggagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

288

Amino Acids

32.98

Weight (kDa)

8.55

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	558
AccB7I	CCANNNNNTGG	2 cut(s)	367, 381
AccIII	TCCGGA	1 cut(s)	685
AciI	CCGC	2 cut(s)	35, 41
AclWI	GGATC	2 cut(s)	32, 45
AcoI	YGGCCR	2 cut(s)	93, 369
AcsI	RAATTY	4 cut(s)	80, 377, 751, 799
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	5 cut(s)	17, 31, 367, 381, 794
AflIII	ACRYGT	1 cut(s)	837
AgsI	TTSAA	4 cut(s)	290, 295, 504, 751
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	5 cut(s)	391, 449, 666, 761, 864
AluI	AGCT	5 cut(s)	391, 449, 666, 761, 864
Alw21I	GWGCWC	2 cut(s)	641, 834
Alw26I	GTCTC	1 cut(s)	401
Alw44I	GTGCAC	1 cut(s)	637
AlwI	GGATC	2 cut(s)	32, 45
Aor13HI	TCCGGA	1 cut(s)	685
AoxI	GGCC	4 cut(s)	93, 248, 355, 369
ApaLI	GTGCAC	1 cut(s)	637
ApeKI	GCWGC	1 cut(s)	591
ApoI	RAATTY	4 cut(s)	80, 377, 751, 799
AspS9I	GGNCC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	182, 205
AsuNHI	GCTAGC	1 cut(s)	757
BaeGI	GKGCMC	2 cut(s)	563, 641
BalI	TGGCCA	2 cut(s)	95, 371
BamHI	GGATCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	2 cut(s)	641, 834
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	6 cut(s)	174, 212, 411, 520, 623, 788
BceAI	ACGGC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	4 cut(s)	446, 450, 456, 758
BfmI	CTRYAG	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	32
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	1 cut(s)	592
BlsI	GCNGC	1 cut(s)	593
Bme1390I	CCNGG	2 cut(s)	32, 346
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	2 cut(s)	39, 560
BmrFI	CCNGG	2 cut(s)	32, 346
BmsI	GCATC	4 cut(s)	324, 598, 620, 802
BmtI	GCTAGC	1 cut(s)	761
BpiI	GAAGAC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	295
BpuEI	CTTGAG	2 cut(s)	590, 774
BpuMI	CCSGG	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	15, 344
BsaWI	WCCGGW	1 cut(s)	685
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 31, 367, 381, 794
Bse3DI	GCAATG	1 cut(s)	525
Bse8I	GATNNNNATC	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	685
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	15, 344
BseGI	GGATG	3 cut(s)	403, 512, 611
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	5 cut(s)	17, 31, 367, 381, 794
BseMI	GCAATG	1 cut(s)	525
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	2 cut(s)	563, 641
BseXI	GCAGC	1 cut(s)	578
BseYI	CCCAGC	1 cut(s)	776
BshFI	GGCC	4 cut(s)	95, 250, 357, 371
BshNI	GGYRCC	1 cut(s)	558
BsiHKAI	GWGCWC	2 cut(s)	641, 834
BsiSI	CCGG	2 cut(s)	346, 686
BslI	CCNNNNNNNGG	5 cut(s)	17, 31, 367, 381, 794
BsmAI	GTCTC	1 cut(s)	401
BsmBI	CGTCTC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	4 cut(s)	95, 250, 357, 371
Bsp1286I	GDGCHC	3 cut(s)	563, 641, 834
Bsp13I	TCCGGA	1 cut(s)	685
Bsp143I	GATC	7 cut(s)	37, 75, 160, 273, 306, 458, 582
BspACI	CCGC	2 cut(s)	35, 41
BspANI	GGCC	4 cut(s)	95, 250, 357, 371
BspEI	TCCGGA	1 cut(s)	685
BspLI	GGNNCC	2 cut(s)	39, 560
BspOI	GCTAGC	1 cut(s)	761
BspPI	GGATC	2 cut(s)	32, 45
BspQI	GCTCTTC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	558
BsrDI	GCAATG	1 cut(s)	525
BssECI	CCNNGG	2 cut(s)	15, 344
BssMI	GATC	7 cut(s)	37, 75, 160, 273, 306, 458, 582
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	759
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	3 cut(s)	403, 512, 611
BstKTI	GATC	7 cut(s)	40, 78, 163, 276, 309, 461, 585
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	7 cut(s)	37, 75, 160, 273, 306, 458, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 617
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	841
BstSCI	CCNGG	2 cut(s)	30, 344
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	2 cut(s)	563, 641
BstV1I	GCAGC	1 cut(s)	578
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	2 cut(s)	37, 160
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	2 cut(s)	37, 160
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	4 cut(s)	95, 250, 357, 371
BtgI	CCRYGG	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	601
BtsCI	GGATG	3 cut(s)	403, 512, 611
BtsIMutI	CAGTG	1 cut(s)	641
Cac8I	GCNNGC	1 cut(s)	759
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	6 cut(s)	283, 319, 367, 643, 674, 838
CviQI	GTAC	1 cut(s)	8
DpnI	GATC	7 cut(s)	39, 77, 162, 275, 308, 460, 584
DpnII	GATC	7 cut(s)	37, 75, 160, 273, 306, 458, 582
EaeI	YGGCCR	2 cut(s)	93, 369
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	30
EcoT22I	ATGCAT	2 cut(s)	613, 748
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	6 cut(s)	286, 322, 370, 646, 677, 841
FaiI	YATR	9 cut(s)	284, 320, 368, 626, 644, 675, 695, 839, 853
FatI	CATG	6 cut(s)	282, 318, 366, 642, 673, 837
FbaI	TGATCA	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	592
FokI	GGATG	3 cut(s)	390, 499, 598
Fsp4HI	GCNGC	1 cut(s)	592
FspBI	CTAG	4 cut(s)	446, 450, 456, 758
GluI	GCNGC	1 cut(s)	592
GsaI	CCCAGC	1 cut(s)	780
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	4 cut(s)	95, 250, 357, 371
HapII	CCGG	2 cut(s)	346, 686
Hin1II	CATG	6 cut(s)	286, 322, 370, 646, 677, 841
HinfI	GANTC	2 cut(s)	242, 689
HpaII	CCGG	2 cut(s)	346, 686
HphI	GGTGA	2 cut(s)	182, 205
Hpy166II	GTNNAC	1 cut(s)	639
Hpy188I	TCNGA	4 cut(s)	60, 769, 805, 829
Hpy188III	TCNNGA	5 cut(s)	335, 398, 435, 686, 791
Hpy8I	GTNNAC	1 cut(s)	639
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	262, 518, 774
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	6 cut(s)	153, 259, 611, 639, 746, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 617
Hsp92II	CATG	6 cut(s)	286, 322, 370, 646, 677, 841
Kpn2I	TCCGGA	1 cut(s)	685
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	7 cut(s)	37, 75, 160, 273, 306, 458, 582
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	766, 861
Lsp1109I	GCAGC	1 cut(s)	578
LweI	GCATC	4 cut(s)	324, 598, 620, 802
MaeI	CTAG	4 cut(s)	446, 450, 456, 758
MaeIII	GTNAC	3 cut(s)	268, 478, 601
MalI	GATC	7 cut(s)	39, 77, 162, 275, 308, 460, 584
MboI	GATC	7 cut(s)	37, 75, 160, 273, 306, 458, 582
MboII	GAAGA	3 cut(s)	76, 179, 552
MfeI	CAATTG	2 cut(s)	729, 816
MflI	RGATCY	2 cut(s)	37, 160
MhlI	GDGCHC	3 cut(s)	563, 641, 834
MlsI	TGGCCA	2 cut(s)	95, 371
MluNI	TGGCCA	2 cut(s)	95, 371
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	2 cut(s)	49, 83
MnlI	CCTC	8 cut(s)	22, 59, 62, 66, 374, 549, 565, 798
Mox20I	TGGCCA	2 cut(s)	95, 371
Mph1103I	ATGCAT	2 cut(s)	613, 748
MroI	TCCGGA	1 cut(s)	685
MscI	TGGCCA	2 cut(s)	95, 371
MseI	TTAA	3 cut(s)	468, 648, 735
Msp20I	TGGCCA	2 cut(s)	95, 371
MspI	CCGG	2 cut(s)	346, 686
MspR9I	CCNGG	2 cut(s)	32, 346
MunI	CAATTG	2 cut(s)	729, 816
Mva1269I	GAATGC	1 cut(s)	748
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	256, 617
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	7 cut(s)	37, 75, 160, 273, 306, 458, 582
NheI	GCTAGC	1 cut(s)	757
NlaIII	CATG	6 cut(s)	286, 322, 370, 646, 677, 841
NlaIV	GGNNCC	2 cut(s)	39, 560
NmuCI	GTSAC	1 cut(s)	601
NsiI	ATGCAT	2 cut(s)	613, 748
NspI	RCATGY	1 cut(s)	841
PciI	ACATGT	1 cut(s)	837
PciSI	GCTCTTC	1 cut(s)	59
PctI	GAATGC	1 cut(s)	748
PfeI	GAWTC	1 cut(s)	242
PflMI	CCANNNNNTGG	2 cut(s)	367, 381
PkrI	GCNGC	1 cut(s)	593
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
PscI	ACATGT	1 cut(s)	837
Psp6I	CCWGG	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	776
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	39, 560
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	2 cut(s)	37, 160
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	468, 648, 735
SatI	GCNGC	1 cut(s)	592
Sau3AI	GATC	7 cut(s)	37, 75, 160, 273, 306, 458, 582
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	698
ScrFI	CCNGG	2 cut(s)	32, 346
SduI	GDGCHC	3 cut(s)	563, 641, 834
SfaNI	GCATC	4 cut(s)	324, 598, 620, 802
SfcI	CTRYAG	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	569, 789
SmoI	CTYRAG	2 cut(s)	569, 789
SsiI	CCGC	2 cut(s)	35, 41
SspMI	CTAG	4 cut(s)	446, 450, 456, 758
StyD4I	CCNGG	2 cut(s)	30, 344
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	2 cut(s)	399, 581
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	3 cut(s)	468, 648, 735
Tru9I	TTAA	3 cut(s)	468, 648, 735
TscAI	CASTG	1 cut(s)	641
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	1 cut(s)	591
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	3 cut(s)	271, 514, 690
TspRI	CASTG	1 cut(s)	641
Van91I	CCANNNNNTGG	2 cut(s)	367, 381
VneI	GTGCAC	1 cut(s)	637
XapI	RAATTY	4 cut(s)	80, 377, 751, 799
XceI	RCATGY	1 cut(s)	841
XspI	CTAG	4 cut(s)	446, 450, 456, 758
Zsp2I	ATGCAT	2 cut(s)	613, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.