Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Forward (+)

33304239 .. 33330393

Gene Structure 26155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGTGTTCGTTTCGGGTTCGACGTTGTTCGACGCGGCTATTCCTCAGCTCTTCTTGGCTTGCCTCGGTCTCTGCTGCAACTATAGGCAAGGTTTTGGGAAGCTTGCTGGGAAGATTACGTCTACATTCCCGATGAATATTTCTAGTCGTATCGGCCATGATCCACCAACATGGTGGCACACAAACTTGTCGAAGTGCCCAAACCTTGAGGTTCTTTCGATCAAGTGCTGCCCGAATGTGACTGATGCATCCATCGCTGACATAGAGTTTCGGTGCACCATGATTAAGGAACTTGACATTAGCTATTGCCATGAAATATCTCCGGAGTCTCTGGTGTTGATTGGGAAGAATTGCCCTAATCTCACAATTGTTAAATGGAATGCATTGAATTTGCTAGATCCTTCTGAACACGCTGGGATTGTTCTTGAGGAATTAGCTTGGAATTATAGTAACAGATTTGGGCTACACTTTGGTCAGTTGGTGTTTATAGCTGTGATCTTTCTGGATAAGGTAAGAGCCGAGGCAAAAGATGGCTCCTACCAACTCGAAGCGCAAATTGAGCCCGAGCTTAGCAAGCTTGTTGAGAAAGTGAAGGTCATGAAGCAATCGTTAATTCGACAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

208

Amino Acids

23.2

Weight (kDa)

6.2

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	122
AccII	CGCG	1 cut(s)	35
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	2 cut(s)	155, 392
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	388
AgsI	TTSAA	1 cut(s)	388
AluBI	AGCT	7 cut(s)	49, 103, 303, 437, 491, 568, 577
AluI	AGCT	7 cut(s)	49, 103, 303, 437, 491, 568, 577
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	2 cut(s)	74, 333
Alw44I	GTGCAC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	155, 392
Ama87I	CYCGRG	1 cut(s)	563
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	1 cut(s)	154
ApaLI	GTGCAC	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	75, 228
ApoI	RAATTY	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	553
AvaI	CYCGRG	1 cut(s)	563
BaeGI	GKGCMC	2 cut(s)	200, 278
BanII	GRGCYC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	278
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	62, 215
BccI	CCATC	2 cut(s)	260, 524
BcoDI	GTCTC	2 cut(s)	74, 333
BfaI	CTAG	2 cut(s)	144, 395
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	3 cut(s)	36, 76, 229
BlpI	GCTNAGC	1 cut(s)	569
BlsI	GCNGC	3 cut(s)	37, 77, 230
BmeT110I	CYCGRG	1 cut(s)	563
BmiI	GGNNCC	1 cut(s)	535
BmsI	GCATC	2 cut(s)	235, 257
Bpu10I	CCTNAGC	1 cut(s)	45
Bpu1102I	GCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	2 cut(s)	227, 446
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	64, 519
BsaWI	WCCGGW	1 cut(s)	322
BseAI	TCCGGA	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	64, 519
BseGI	GGATG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	59
BseSI	GKGCMC	2 cut(s)	200, 278
BseXI	GCAGC	2 cut(s)	62, 215
BseYI	CCCAGC	2 cut(s)	107, 413
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	74, 333
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	563
Bsp1286I	GDGCHC	3 cut(s)	200, 278, 564
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	160, 219, 397, 495
Bsp1720I	GCTNAGC	1 cut(s)	569
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	58
BspEI	TCCGGA	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	535
BspPI	GGATC	2 cut(s)	155, 392
BspQI	GCTCTTC	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	64, 519
BssMI	GATC	4 cut(s)	160, 219, 397, 495
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	61, 105, 575
BstDEI	CTNAG	2 cut(s)	45, 569
BstF5I	GGATG	1 cut(s)	248
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	4 cut(s)	163, 222, 400, 498
BstMAI	GTCTC	2 cut(s)	74, 333
BstMBI	GATC	4 cut(s)	160, 219, 397, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 559, 574
BstSFI	CTRYAG	1 cut(s)	82
BstSLI	GKGCMC	2 cut(s)	200, 278
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	62, 215
BstX2I	RGATCY	1 cut(s)	397
BstXI	CCANNNNNNTGG	2 cut(s)	171, 174
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	156
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	248
Cac8I	GCNNGC	3 cut(s)	61, 105, 575
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	1 cut(s)	553
CseI	GACGC	1 cut(s)	41
CviAII	CATG	5 cut(s)	158, 171, 280, 311, 598
DdeI	CTNAG	2 cut(s)	45, 569
DpnI	GATC	4 cut(s)	162, 221, 399, 497
DpnII	GATC	4 cut(s)	160, 219, 397, 495
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	564
Eco31I	GGTCTC	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	563
EcoT22I	ATGCAT	2 cut(s)	250, 385
EcoT38I	GRGCYC	1 cut(s)	564
FaeI	CATG	5 cut(s)	161, 174, 283, 314, 601
FaiI	YATR	9 cut(s)	84, 159, 172, 263, 281, 312, 447, 488, 599
FatI	CATG	5 cut(s)	157, 170, 279, 310, 597
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	3 cut(s)	36, 76, 229
FokI	GGATG	1 cut(s)	235
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	3 cut(s)	36, 76, 229
FspBI	CTAG	2 cut(s)	144, 395
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	3 cut(s)	36, 76, 229
GsaI	CCCAGC	2 cut(s)	111, 417
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	1 cut(s)	323
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	5 cut(s)	161, 174, 283, 314, 601
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HindIII	AAGCTT	2 cut(s)	101, 575
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	123, 276
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	5 cut(s)	130, 323, 425, 503, 598
Hpy8I	GTNNAC	2 cut(s)	123, 276
Hpy99I	CGWCG	2 cut(s)	25, 35
HpyAV	CCTTC	2 cut(s)	411, 586
HpyCH4IV	ACGT	2 cut(s)	23, 119
HpyCH4V	TGCA	4 cut(s)	78, 248, 276, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 559, 574
HpyF3I	CTNAG	2 cut(s)	45, 569
HpySE526I	ACGT	2 cut(s)	23, 119
Hsp92II	CATG	5 cut(s)	161, 174, 283, 314, 601
HspAI	GCGC	1 cut(s)	551
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	160, 219, 397, 495
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	539
LpnPI	CCDG	5 cut(s)	93, 317, 336, 399, 488
Lsp1109I	GCAGC	2 cut(s)	62, 215
LweI	GCATC	2 cut(s)	235, 257
MaeI	CTAG	2 cut(s)	144, 395
MaeII	ACGT	2 cut(s)	23, 119
MaeIII	GTNAC	2 cut(s)	238, 449
MalI	GATC	4 cut(s)	162, 221, 399, 497
MboI	GATC	4 cut(s)	160, 219, 397, 495
MboII	GAAGA	3 cut(s)	43, 124, 358
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	3 cut(s)	200, 278, 564
MluCI	AATT	7 cut(s)	349, 366, 388, 431, 442, 555, 612
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	5 cut(s)	54, 74, 202, 421, 514
Mph1103I	ATGCAT	2 cut(s)	250, 385
MroI	TCCGGA	1 cut(s)	322
MseI	TTAA	3 cut(s)	285, 372, 611
MslI	CAYNNNNRTG	1 cut(s)	169
MspI	CCGG	1 cut(s)	323
MunI	CAATTG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	385
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	254, 559, 574
NdeII	GATC	4 cut(s)	160, 219, 397, 495
NlaIII	CATG	5 cut(s)	161, 174, 283, 314, 601
NlaIV	GGNNCC	1 cut(s)	535
NmeAIII	GCCGAG	1 cut(s)	544
NmuCI	GTSAC	1 cut(s)	238
NsiI	ATGCAT	2 cut(s)	250, 385
PagI	TCATGA	1 cut(s)	597
PciSI	GCTCTTC	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	1 cut(s)	385
PkrI	GCNGC	3 cut(s)	37, 77, 230
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PspFI	CCCAGC	2 cut(s)	107, 413
PspN4I	GGNNCC	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	3 cut(s)	285, 372, 611
SatI	GCNGC	3 cut(s)	36, 76, 229
Sau3AI	GATC	4 cut(s)	160, 219, 397, 495
SchI	GAGTC	1 cut(s)	335
SduI	GDGCHC	3 cut(s)	200, 278, 564
SfaNI	GCATC	2 cut(s)	235, 257
SfcI	CTRYAG	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	206, 425
SmoI	CTYRAG	2 cut(s)	206, 425
Sse9I	AATT	7 cut(s)	349, 366, 388, 431, 442, 555, 612
SsiI	CCGC	1 cut(s)	35
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	2 cut(s)	144, 395
TaiI	ACGT	2 cut(s)	26, 122
TaqI	TCGA	6 cut(s)	20, 30, 191, 218, 546, 616
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	7 cut(s)	349, 366, 388, 431, 442, 555, 612
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	3 cut(s)	285, 372, 611
Tru9I	TTAA	3 cut(s)	285, 372, 611
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	75, 228
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	3 cut(s)	149, 327, 614
VneI	GTGCAC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	2 cut(s)	144, 395
Zsp2I	ATGCAT	2 cut(s)	250, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.