Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

11137796 .. 11138709

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1151100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCTCCGATCTGTCGTCGATTGGAGCACCGGCTCGCAGAAACAGATCCGCACCACGCACTGCTCCAATCAGTCTCTCTCGCTCGTCGCTCAGAGGTGCCCGAACCTCGAGTTTCTTTCGATCAATAGCTGCCCGAATGTGACTGATTCGTCCATGGCTGATATAGCGTTTCGCTGCCCCATGATCCGGGAACTTGACATCAGCTATTGCCACGAAGTATCTCATGAGTCTCTGGCGTTGATTGGGAGGAACTGCCCAAATCTGAAAATCTTGGAACGGAATATGATGAATTGGTTAGATCCATCCCAACACACTGGTGTTGTTCCGGACGAGTACTTAAACACTTGGCCTCAGGATGGAAATTCAGAAGCTGCTGCAATTGGCAAATCTATGCCAAATTTGGAGCACCTTGAACTTCGATTCTCAAAGGTATCGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

5.67

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	96
AccIII	TCCGGA	1 cut(s)	325
AciI	CCGC	1 cut(s)	49
AclWI	GGATC	3 cut(s)	40, 178, 293
AcsI	RAATTY	2 cut(s)	361, 397
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	186, 356
AgsI	TTSAA	1 cut(s)	413
AleI	CACNNNNGTG	1 cut(s)	315
AluBI	AGCT	3 cut(s)	129, 204, 371
AluI	AGCT	3 cut(s)	129, 204, 371
Alw21I	GWGCWC	2 cut(s)	29, 408
Alw26I	GTCTC	2 cut(s)	78, 234
AlwI	GGATC	3 cut(s)	40, 178, 293
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	107
Aor13HI	TCCGGA	1 cut(s)	325
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	4 cut(s)	129, 174, 371, 374
ApoI	RAATTY	2 cut(s)	361, 397
AsuC2I	CCSGG	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	107
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	96
Bbv12I	GWGCWC	2 cut(s)	29, 408
BbvI	GCAGC	4 cut(s)	116, 161, 358, 361
BccI	CCATC	2 cut(s)	310, 350
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	78, 234
BisI	GCNGC	4 cut(s)	130, 175, 372, 375
BlsI	GCNGC	4 cut(s)	131, 176, 373, 376
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 356
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	319
Bse21I	CCTNAGG	1 cut(s)	351
BseAI	TCCGGA	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	302, 361
BseLI	CCNNNNNNNGG	2 cut(s)	186, 356
BseMII	CTCAG	2 cut(s)	104, 365
BseNI	ACTGG	1 cut(s)	319
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	4 cut(s)	116, 161, 358, 361
BshFI	GGCC	1 cut(s)	349
BshNI	GGYRCC	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	29, 408
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	30, 187, 326
BslI	CCNNNNNNNGG	2 cut(s)	186, 356
BsmAI	GTCTC	2 cut(s)	78, 234
BsnI	GGCC	1 cut(s)	349
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	3 cut(s)	29, 101, 408
Bsp13I	TCCGGA	1 cut(s)	325
Bsp143I	GATC	5 cut(s)	8, 45, 120, 183, 298
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	2 cut(s)	103, 364
BspEI	TCCGGA	1 cut(s)	325
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	98
BspPI	GGATC	3 cut(s)	40, 178, 293
BspT107I	GGYRCC	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	5 cut(s)	8, 45, 120, 183, 298
BssT1I	CCWWGG	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	90, 351
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	302, 361
BstKTI	GATC	5 cut(s)	11, 48, 123, 186, 301
BstMAI	GTCTC	2 cut(s)	78, 234
BstMBI	GATC	5 cut(s)	8, 45, 120, 183, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	4 cut(s)	116, 161, 358, 361
BstX2I	RGATCY	2 cut(s)	45, 298
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	2 cut(s)	45, 298
Bsu36I	CCTNAGG	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	349
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	302, 361
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	58, 312
Cac8I	GCNNGC	1 cut(s)	35
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	3 cut(s)	154, 181, 224
CviJI	RGCY	7 cut(s)	33, 129, 158, 204, 349, 371, 437
CviKI_1	RGCY	7 cut(s)	33, 129, 158, 204, 349, 371, 437
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	2 cut(s)	90, 351
DpnI	GATC	5 cut(s)	10, 47, 122, 185, 300
DpnII	GATC	5 cut(s)	8, 45, 120, 183, 298
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	3 cut(s)	157, 184, 227
FaiI	YATR	6 cut(s)	155, 164, 182, 225, 284, 392
FatI	CATG	3 cut(s)	153, 180, 223
Fnu4HI	GCNGC	4 cut(s)	130, 175, 372, 375
FokI	GGATG	2 cut(s)	289, 368
Fsp4HI	GCNGC	4 cut(s)	130, 175, 372, 375
GluI	GCNGC	4 cut(s)	130, 175, 372, 375
HaeIII	GGCC	1 cut(s)	349
HapII	CCGG	3 cut(s)	30, 187, 326
Hin1II	CATG	3 cut(s)	157, 184, 227
HinfI	GANTC	3 cut(s)	146, 227, 420
HpaII	CCGG	3 cut(s)	30, 187, 326
Hpy188I	TCNGA	4 cut(s)	8, 93, 264, 367
Hpy188III	TCNNGA	3 cut(s)	224, 326, 353
Hpy99I	CGWCG	2 cut(s)	20, 89
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	2 cut(s)	90, 351
Hsp92II	CATG	3 cut(s)	157, 184, 227
Kpn2I	TCCGGA	1 cut(s)	325
Kzo9I	GATC	5 cut(s)	8, 45, 120, 183, 298
LmnI	GCTCC	4 cut(s)	9, 24, 68, 403
LpnPI	CCDG	6 cut(s)	43, 200, 218, 300, 338, 339
Lsp1109I	GCAGC	4 cut(s)	116, 161, 358, 361
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	5 cut(s)	10, 47, 122, 185, 300
MboI	GATC	5 cut(s)	8, 45, 120, 183, 298
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	2 cut(s)	45, 298
MhlI	GDGCHC	3 cut(s)	29, 101, 408
MluCI	AATT	4 cut(s)	289, 361, 378, 397
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	4 cut(s)	87, 116, 240, 360
MroI	TCCGGA	1 cut(s)	325
MseI	TTAA	2 cut(s)	338, 439
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	3 cut(s)	30, 187, 326
MspR9I	CCNGG	1 cut(s)	188
MunI	CAATTG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	5 cut(s)	8, 45, 120, 183, 298
NlaIII	CATG	3 cut(s)	157, 184, 227
NlaIV	GGNNCC	1 cut(s)	98
NmuCI	GTSAC	1 cut(s)	139
OliI	CACNNNNGTG	1 cut(s)	315
PaeR7I	CTCGAG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	146, 420
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	4 cut(s)	131, 176, 373, 376
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	98
PspXI	VCTCGAGB	1 cut(s)	107
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	2 cut(s)	45, 298
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	338, 439
SatI	GCNGC	4 cut(s)	130, 175, 372, 375
Sau3AI	GATC	5 cut(s)	8, 45, 120, 183, 298
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	3 cut(s)	29, 101, 408
SetI	ASST	7 cut(s)	98, 108, 131, 206, 373, 411, 432
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	4 cut(s)	289, 361, 378, 397
SsiI	CCGC	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	153
TaqI	TCGA	4 cut(s)	18, 108, 119, 418
TasI	AATT	4 cut(s)	289, 361, 378, 397
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	146, 420
Tru1I	TTAA	2 cut(s)	338, 439
Tru9I	TTAA	2 cut(s)	338, 439
TscAI	CASTG	2 cut(s)	65, 319
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	4 cut(s)	129, 174, 371, 374
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	2 cut(s)	65, 319
XapI	RAATTY	2 cut(s)	361, 397
XhoI	CTCGAG	1 cut(s)	107
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.