Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

48526922 .. 48530426

Gene Structure 3505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014167

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAGATCAACGTCTCACCTGAGCCCTCTATTGTCATGTTTTTGAGTGCAGCAAACTCACCTGTGCCCAATTCTTCTACTGCTAGCATGGAGACCAATCTCTCACTTGAGCCATCTACTGTTGAAAATCCAAGTCCAGCTAGTTCAACTCCTATCACAGGTCATGGTCCCTGGATGCTTATGTCGTATAAGAACAGGAAAACCAACCCAGTTAAAGCCCCAACCAATTTTGTCTCAGCTAAGTCTAGTTCTAGATTTTCTCTTTTGCAAACTTTCGATGCTGAAGGGGATGATGCCATGAATGAAAAACCACCAACATCCATTGACCAACTTCCCAAGCTTAACAGCTCATCTGAACCAAAAGTTGTTAAGGTTTGGAAGAAAGTTCAGGAAAAACTAACCAACTCTGTGGATGATGGTGCTACTATGAAGTCCACAACTATTGATGCCAACTCTACCAATACTTCTATAGTGGCTCTTCATGATATTACCAATGGCAAGGCTCATGTAAAAACTACCAAATCTGCTGCTTCTACTTCCAAACCTGCTGTTAGAAAGTCATCTCTGATGAAGCATGATCCGGCTAGAAAGAATGCTTTTCCAAGTTTGATTACTTTAATCAATGGTGTTCATGCTTCTCCTATTTGTAATAATACTTCTACCTTGTTTGGACATTGTCCACCTGTAATTTTGAAGAATGACAGCAACAACATATCACAGGACACAAAAACTCATCAAGTTGAAAATTCCCGCAGTGGCCAGAATTTGAAGATGACTACTTTGTTGATGCGTTTTCTGAGGTGCCCAAACCTTGACGTTCTTTCGATCAAGTGCTGCCCGAATGTGACTGATGCATCCATCGCTGACATAGAGTTTCGGTGCACCATGATTAAGGAACTTGACATCAGCTATTGCCATGTAATATCTCCGGAGTCTCTGGTGTTGATTAGGAAGAATTGCCCTAATCTCACAATTGTTAAATGGAATGCATTGAAGTTGCTAGATCCTTCTGAACACGCTGGGATTGTTCCAGAGGAGTATTTAAAAACTTGCCCTGAAGATGGAAATTCAGAAGTTGATGCAATTGGCAAATCAGAGCACAACATGTTGGTTAGGATATGGAAGTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

378

Amino Acids

41.2

Weight (kDa)

8.29

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	801
AccIII	TCCGGA	1 cut(s)	928
AciI	CCGC	1 cut(s)	751
AclWI	GGATC	2 cut(s)	572, 998
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	3 cut(s)	745, 763, 1066
AcuI	CTGAAG	2 cut(s)	303, 1077
AfiI	CCNNNNNNNGG	2 cut(s)	158, 1061
AflIII	ACRYGT	1 cut(s)	1104
AgsI	TTSAA	6 cut(s)	125, 147, 694, 743, 769, 994
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	6 cut(s)	140, 239, 340, 348, 909, 1131
AluI	AGCT	6 cut(s)	140, 239, 340, 348, 909, 1131
Alw21I	GWGCWC	2 cut(s)	884, 1101
Alw26I	GTCTC	4 cut(s)	19, 86, 238, 939
Alw44I	GTGCAC	1 cut(s)	880
AlwI	GGATC	2 cut(s)	572, 998
Aor13HI	TCCGGA	1 cut(s)	928
AoxI	GGCC	1 cut(s)	757
ApaLI	GTGCAC	1 cut(s)	880
ApeKI	GCWGC	3 cut(s)	50, 527, 834
ApoI	RAATTY	3 cut(s)	745, 763, 1066
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	9, 51
AsuNHI	GCTAGC	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	3 cut(s)	69, 806, 884
BalI	TGGCCA	1 cut(s)	759
BanI	GGYRCC	1 cut(s)	801
BanII	GRGCYC	1 cut(s)	27
BarI	GAAGNNNNNNTAC	2 cut(s)	640, 672
Bbv12I	GWGCWC	2 cut(s)	884, 1101
BbvI	GCAGC	3 cut(s)	62, 514, 821
BccI	CCATC	4 cut(s)	121, 410, 866, 1055
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	4 cut(s)	19, 86, 238, 939
BfaI	CTAG	6 cut(s)	84, 141, 246, 252, 585, 1001
BfmI	CTRYAG	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	553
BisI	GCNGC	3 cut(s)	51, 528, 835
BlsI	GCNGC	3 cut(s)	52, 529, 836
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	169, 803
BmrFI	CCNGG	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	8 cut(s)	165, 268, 283, 436, 777, 841, 863, 1069
BmtI	GCTAGC	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	928
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 1061
Bse1I	ACTGG	1 cut(s)	209
BseAI	TCCGGA	1 cut(s)	928
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	5 cut(s)	180, 295, 317, 418, 854
BseLI	CCNNNNNNNGG	2 cut(s)	158, 1061
BseMII	CTCAG	3 cut(s)	12, 249, 788
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	1049
BseSI	GKGCMC	3 cut(s)	69, 806, 884
BseXI	GCAGC	3 cut(s)	62, 514, 821
BseYI	CCCAGC	1 cut(s)	1019
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	759
BshNI	GGYRCC	1 cut(s)	801
BsiHKAI	GWGCWC	2 cut(s)	884, 1101
BsiSI	CCGG	2 cut(s)	581, 929
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	158, 1061
BsmAI	GTCTC	4 cut(s)	19, 86, 238, 939
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	2 cut(s)	598, 991
BsnI	GGCC	1 cut(s)	759
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	5 cut(s)	27, 69, 806, 884, 1101
Bsp13I	TCCGGA	1 cut(s)	928
Bsp143I	GATC	4 cut(s)	6, 577, 825, 1003
BspACI	CCGC	1 cut(s)	751
BspANI	GGCC	1 cut(s)	759
BspCNI	CTCAG	3 cut(s)	13, 248, 789
BspEI	TCCGGA	1 cut(s)	928
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	169, 803
BspMI	ACCTGC	1 cut(s)	553
BspOI	GCTAGC	1 cut(s)	87
BspPI	GGATC	2 cut(s)	572, 998
BspQI	GCTCTTC	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	801
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	4 cut(s)	6, 577, 825, 1003
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	4 cut(s)	21, 235, 240, 797
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstF5I	GGATG	5 cut(s)	180, 295, 317, 418, 854
BstKTI	GATC	4 cut(s)	9, 580, 828, 1006
BstMAI	GTCTC	4 cut(s)	19, 86, 238, 939
BstMBI	GATC	4 cut(s)	6, 577, 825, 1003
BstMWI	GCNNNNNNNGC	1 cut(s)	860
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	1 cut(s)	1108
BstSCI	CCNGG	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	3 cut(s)	69, 806, 884
BstV1I	GCAGC	3 cut(s)	62, 514, 821
BstX2I	RGATCY	1 cut(s)	1003
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	1003
BsuRI	GGCC	1 cut(s)	759
BtgZI	GCGATG	1 cut(s)	844
BtsCI	GGATG	5 cut(s)	180, 295, 317, 418, 854
BtsI	GCAGTG	1 cut(s)	760
BtsIMutI	CAGTG	1 cut(s)	760
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	1 cut(s)	85
CciI	TCATGA	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	167
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
DdeI	CTNAG	4 cut(s)	21, 235, 240, 797
DpnI	GATC	4 cut(s)	8, 579, 827, 1005
DpnII	GATC	4 cut(s)	6, 577, 825, 1003
DraI	TTTAAA	1 cut(s)	1044
EaeI	YGGCCR	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	2 cut(s)	303, 1077
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	170
EcoT22I	ATGCAT	2 cut(s)	856, 991
EcoT38I	GRGCYC	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	19
FaqI	GGGAC	1 cut(s)	153
FauI	CCCGC	1 cut(s)	758
Fnu4HI	GCNGC	3 cut(s)	51, 528, 835
FokI	GGATG	5 cut(s)	187, 302, 304, 425, 841
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	51, 528, 835
FspBI	CTAG	6 cut(s)	84, 141, 246, 252, 585, 1001
GluI	GCNGC	3 cut(s)	51, 528, 835
GsaI	CCCAGC	1 cut(s)	1023
HaeIII	GGCC	1 cut(s)	759
HapII	CCGG	2 cut(s)	581, 929
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	1 cut(s)	932
HpaII	CCGG	2 cut(s)	581, 929
HphI	GGTGA	2 cut(s)	9, 51
Hpy166II	GTNNAC	3 cut(s)	435, 680, 882
Hpy188I	TCNGA	6 cut(s)	355, 567, 798, 1012, 1072, 1096
Hpy188III	TCNNGA	5 cut(s)	252, 389, 482, 929, 1031
Hpy8I	GTNNAC	3 cut(s)	435, 680, 882
HpyAV	CCTTC	2 cut(s)	278, 1017
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	2 cut(s)	12, 816
HpyCH4V	TGCA	6 cut(s)	50, 268, 854, 882, 989, 1082
HpyF10VI	GCNNNNNNNGC	1 cut(s)	860
HpyF3I	CTNAG	4 cut(s)	21, 235, 240, 797
HpySE526I	ACGT	2 cut(s)	12, 816
Kpn2I	TCCGGA	1 cut(s)	928
Kzo9I	GATC	4 cut(s)	6, 577, 825, 1003
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	1 cut(s)	1128
Lsp1109I	GCAGC	3 cut(s)	62, 514, 821
LweI	GCATC	8 cut(s)	165, 268, 283, 436, 777, 841, 863, 1069
MaeI	CTAG	6 cut(s)	84, 141, 246, 252, 585, 1001
MaeII	ACGT	2 cut(s)	12, 816
MaeIII	GTNAC	1 cut(s)	844
MalI	GATC	4 cut(s)	8, 579, 827, 1005
MboI	GATC	4 cut(s)	6, 577, 825, 1003
MboII	GAAGA	7 cut(s)	66, 391, 470, 706, 781, 964, 1070
MfeI	CAATTG	2 cut(s)	972, 1083
MflI	RGATCY	1 cut(s)	1003
MhlI	GDGCHC	5 cut(s)	27, 69, 806, 884, 1101
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	9 cut(s)	70, 226, 687, 745, 763, 955, 972, 1066, 1083
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	1 cut(s)	941
MnlI	CCTC	3 cut(s)	37, 792, 1027
Mox20I	TGGCCA	1 cut(s)	759
Mph1103I	ATGCAT	2 cut(s)	856, 991
MroI	TCCGGA	1 cut(s)	928
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	7 cut(s)	213, 342, 369, 617, 891, 978, 1043
Msp20I	TGGCCA	1 cut(s)	759
MspI	CCGG	2 cut(s)	581, 929
MspR9I	CCNGG	1 cut(s)	172
MunI	CAATTG	2 cut(s)	972, 1083
Mva1269I	GAATGC	2 cut(s)	598, 991
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	860
NdeII	GATC	4 cut(s)	6, 577, 825, 1003
NheI	GCTAGC	1 cut(s)	83
NlaIV	GGNNCC	2 cut(s)	169, 803
NmuCI	GTSAC	1 cut(s)	844
NsiI	ATGCAT	2 cut(s)	856, 991
NspI	RCATGY	1 cut(s)	1108
PagI	TCATGA	1 cut(s)	481
PciI	ACATGT	1 cut(s)	1104
PciSI	GCTCTTC	1 cut(s)	483
PctI	GAATGC	2 cut(s)	598, 991
PflFI	GACNNNGTC	1 cut(s)	675
PkrI	GCNGC	3 cut(s)	52, 529, 836
PleI	GAGTC	1 cut(s)	940
PpsI	GAGTC	1 cut(s)	940
PscI	ACATGT	1 cut(s)	1104
Psp6I	CCWGG	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	1019
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	169, 803
PspPI	GGNCC	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	1003
PsyI	GACNNNGTC	1 cut(s)	675
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	7 cut(s)	213, 342, 369, 617, 891, 978, 1043
SatI	GCNGC	3 cut(s)	51, 528, 835
Sau3AI	GATC	4 cut(s)	6, 577, 825, 1003
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	941
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	5 cut(s)	27, 69, 806, 884, 1101
SfaNI	GCATC	8 cut(s)	165, 268, 283, 436, 777, 841, 863, 1069
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	9 cut(s)	70, 226, 687, 745, 763, 955, 972, 1066, 1083
SsiI	CCGC	1 cut(s)	751
SspMI	CTAG	6 cut(s)	84, 141, 246, 252, 585, 1001
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	2 cut(s)	15, 819
TaqI	TCGA	2 cut(s)	276, 824
TasI	AATT	9 cut(s)	70, 226, 687, 745, 763, 955, 972, 1066, 1083
Tru1I	TTAA	7 cut(s)	213, 342, 369, 617, 891, 978, 1043
Tru9I	TTAA	7 cut(s)	213, 342, 369, 617, 891, 978, 1043
TscAI	CASTG	1 cut(s)	760
TseFI	GTSAC	1 cut(s)	844
TseI	GCWGC	3 cut(s)	50, 527, 834
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	6 cut(s)	314, 318, 443, 470, 584, 620
TspRI	CASTG	1 cut(s)	760
Tth111I	GACNNNGTC	1 cut(s)	675
VneI	GTGCAC	1 cut(s)	880
VpaK11BI	GGWCC	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	156
XapI	RAATTY	3 cut(s)	745, 763, 1066
XbaI	TCTAGA	1 cut(s)	251
XceI	RCATGY	1 cut(s)	1108
XspI	CTAG	6 cut(s)	84, 141, 246, 252, 585, 1001
Zsp2I	ATGCAT	2 cut(s)	856, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.