Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000543.1

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Forward (+)

216842 .. 217123

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000543.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgcatccatcgctgatagagtttcggtgcaccatgattaaggaacttgacatcagctattgccatgaaatatctccggagtctctggtgttgattaggaagaatttccctaatctcacaattgttaaatggaatgcattgaatttgctagatcctcctgaacacgctgggattgttcctgaggagtatttaaaaacttgtcctcaagatggaaattcagaagctgatgcaattggcaaatcagagcacaacatgttggttaggatatggaagtggagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

93

Amino Acids

10.72

Weight (kDa)

5.46

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	76
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	3 cut(s)	103, 142, 214
AfiI	CCNNNNNNNGG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	3 cut(s)	57, 224, 279
AluI	AGCT	3 cut(s)	57, 224, 279
Alw21I	GWGCWC	2 cut(s)	32, 249
Alw26I	GTCTC	1 cut(s)	87
Alw44I	GTGCAC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	146
AlwNI	CAGNNNCTG	1 cut(s)	224
Aor13HI	TCCGGA	1 cut(s)	76
ApaLI	GTGCAC	1 cut(s)	28
ApoI	RAATTY	3 cut(s)	103, 142, 214
Asp700I	GAANNNNTTC	1 cut(s)	104
AxyI	CCTNAGG	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	32, 249
BccI	CCATC	2 cut(s)	16, 203
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	13, 217
BpuEI	CTTGAG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse21I	CCTNAGG	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	76
BseGI	GGATG	1 cut(s)	4
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	32
BseYI	CCCAGC	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	32, 249
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	32, 249
Bsp13I	TCCGGA	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	172
BspEI	TCCGGA	1 cut(s)	76
BspPI	GGATC	1 cut(s)	146
BssMI	GATC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	4
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	4
CaiI	CAGNNNCTG	1 cut(s)	224
CviAII	CATG	3 cut(s)	34, 65, 253
CviJI	RGCY	3 cut(s)	57, 224, 279
CviKI_1	RGCY	3 cut(s)	57, 224, 279
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
DraI	TTTAAA	1 cut(s)	192
Eco81I	CCTNAGG	1 cut(s)	180
EcoT22I	ATGCAT	2 cut(s)	6, 139
FaeI	CATG	3 cut(s)	37, 68, 256
FaiI	YATR	4 cut(s)	35, 66, 254, 268
FatI	CATG	3 cut(s)	33, 64, 252
FspBI	CTAG	1 cut(s)	149
GsaI	CCCAGC	1 cut(s)	171
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	3 cut(s)	37, 68, 256
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	2 cut(s)	220, 244
Hpy188III	TCNNGA	4 cut(s)	77, 158, 179, 206
Hpy8I	GTNNAC	1 cut(s)	30
HpyCH4V	TGCA	4 cut(s)	4, 30, 137, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	37, 68, 256
Kpn2I	TCCGGA	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	276
LpnPI	CCDG	5 cut(s)	71, 90, 153, 171, 192
LweI	GCATC	2 cut(s)	13, 217
MaeI	CTAG	1 cut(s)	149
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	112
MfeI	CAATTG	2 cut(s)	120, 231
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	32, 249
MluCI	AATT	5 cut(s)	103, 120, 142, 214, 231
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	3 cut(s)	165, 175, 213
Mph1103I	ATGCAT	2 cut(s)	6, 139
MroI	TCCGGA	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	3 cut(s)	39, 126, 191
MspI	CCGG	1 cut(s)	77
MunI	CAATTG	2 cut(s)	120, 231
Mva1269I	GAATGC	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	37, 68, 256
NsiI	ATGCAT	2 cut(s)	6, 139
NspI	RCATGY	1 cut(s)	256
PciI	ACATGT	1 cut(s)	252
PctI	GAATGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	104
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	167
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	39, 126, 191
Sau3AI	GATC	1 cut(s)	151
SchI	GAGTC	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	32, 249
SetI	ASST	3 cut(s)	59, 226, 281
SfaNI	GCATC	2 cut(s)	13, 217
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	5 cut(s)	103, 120, 142, 214, 231
SspMI	CTAG	1 cut(s)	149
TasI	AATT	5 cut(s)	103, 120, 142, 214, 231
Tru1I	TTAA	3 cut(s)	39, 126, 191
Tru9I	TTAA	3 cut(s)	39, 126, 191
TspDTI	ATGAA	1 cut(s)	81
VneI	GTGCAC	1 cut(s)	28
XapI	RAATTY	3 cut(s)	103, 142, 214
XceI	RCATGY	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	2 cut(s)	6, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.