Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

301816 .. 305141

Gene Structure 3326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00510.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTATTACAAGGACATACGAGACCTACAAAAGTAAATGGATCCAGAACCTAAACTTGTCATATAAGACAATACAAAGACAACTAAGGAAATCTGAAAACAACTTAACTATCAACAGTTATGGCCATTGGAGGTTGTATGAGGAGCGATTTCAGACAGATGTTTTCAGAATCCAGCCTGCTAAGCTCGGAAATAAAATATGTATGACCGTGTTGTGTTGCTCTGATCAATTGTGGGAAAAGTATATTGTATCTGCTGGTGTGTGGAGCTCTTTACAAAAGGTTCTGTATCTATTTCACTTCTACTTATCGAAAACCTTGCCAATAAGTCCGATTGTATGGAGTTCATATATAAACCATGTATTAATGCTTTTCTCTTTGTATTTAGTATCATACTTTCATTTGCATATGCAAATCATGTTTGAGGAACAGCTTTACGTCATCTTATTTTTACGTATCATGTCAAGCGGCGTCGCTCAGTTCACAACCCGGAGTACTCTCCGTGCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

171

Amino Acids

20.29

Weight (kDa)

9.56

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	2 cut(s)	37, 50
AcoI	YGGCCR	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	1 cut(s)	496
AluBI	AGCT	3 cut(s)	187, 270, 433
AluI	AGCT	3 cut(s)	187, 270, 433
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	2 cut(s)	37, 50
AoxI	GGCC	1 cut(s)	124
AseI	ATTAAT	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	126
BamHI	GGATCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	272
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	469
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	470
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	490
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	490
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	490
BsaAI	YACGTR	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	42, 226
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	37, 50
BspTNI	GGTCTC	1 cut(s)	17
BssMI	GATC	2 cut(s)	42, 226
BssNI	GRCGYC	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	119, 211
BstACI	GRCGYC	1 cut(s)	471
BstBAI	YACGTR	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	3 cut(s)	86, 183, 477
BstKTI	GATC	2 cut(s)	45, 229
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	42, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	488
BstSNI	TACGTA	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	180
CseI	GACGC	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	495
CviAII	CATG	3 cut(s)	359, 418, 460
CviJI	RGCY	6 cut(s)	5, 126, 178, 187, 270, 433
CviKI_1	RGCY	6 cut(s)	5, 126, 178, 187, 270, 433
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	3 cut(s)	86, 183, 477
DpnI	GATC	2 cut(s)	44, 228
DpnII	GATC	2 cut(s)	42, 226
EaeI	YGGCCR	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	270
Eco105I	TACGTA	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	3 cut(s)	362, 421, 463
FatI	CATG	3 cut(s)	358, 417, 459
FauNDI	CATATG	1 cut(s)	408
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	469
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	469
GluI	GCNGC	1 cut(s)	469
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	490
HgaI	GACGC	1 cut(s)	460
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	3 cut(s)	362, 421, 463
HinfI	GANTC	1 cut(s)	171
HpaII	CCGG	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	483
Hpy188I	TCNGA	6 cut(s)	97, 156, 170, 191, 226, 333
Hpy188III	TCNNGA	2 cut(s)	46, 510
Hpy8I	GTNNAC	1 cut(s)	483
Hpy99I	CGWCG	1 cut(s)	476
HpyCH4III	ACNGT	2 cut(s)	119, 211
HpyCH4IV	ACGT	2 cut(s)	438, 454
HpyCH4V	TGCA	2 cut(s)	406, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	3 cut(s)	86, 183, 477
HpySE526I	ACGT	2 cut(s)	438, 454
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	3 cut(s)	362, 421, 463
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	42, 226
LmnI	GCTCC	2 cut(s)	145, 267
LpnPI	CCDG	5 cut(s)	59, 188, 192, 243, 503
MaeII	ACGT	2 cut(s)	438, 454
MalI	GATC	2 cut(s)	44, 228
MboI	GATC	2 cut(s)	42, 226
MfeI	CAATTG	1 cut(s)	230
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	272
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	1 cut(s)	230
MluNI	TGGCCA	1 cut(s)	126
MnlI	CCTC	3 cut(s)	126, 136, 418
Mox20I	TGGCCA	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	2 cut(s)	107, 365
Msp20I	TGGCCA	1 cut(s)	126
MspI	CCGG	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	490
MunI	CAATTG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	184
NciI	CCSGG	1 cut(s)	490
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	2 cut(s)	42, 226
NlaIII	CATG	3 cut(s)	362, 421, 463
NlaIV	GGNNCC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	470
Ppu21I	YACGTR	1 cut(s)	455
PshBI	ATTAAT	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
SacI	GAGCTC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	107, 365
SatI	GCNGC	1 cut(s)	469
Sau3AI	GATC	2 cut(s)	42, 226
ScaI	AGTACT	1 cut(s)	496
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	1 cut(s)	272
SnaBI	TACGTA	1 cut(s)	455
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	468
SstI	GAGCTC	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	488
TaaI	ACNGT	2 cut(s)	119, 211
TaiI	ACGT	2 cut(s)	441, 457
TaqI	TCGA	1 cut(s)	311
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	494
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	2 cut(s)	107, 365
Tru9I	TTAA	2 cut(s)	107, 365
TspDTI	ATGAA	2 cut(s)	336, 389
TspGWI	ACGGA	1 cut(s)	491
VspI	ATTAAT	1 cut(s)	365
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.