Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Forward (+)

28479586 .. 28480717

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018338

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGACTACTTTGTTGATGCGTTTTCTGAGGTGCCCAAACCTTGAGGTTCTTTCGATCAAGTGCTGCCCGAATGTGACTGATGCATCCATCGCTGACATAGAGTTTCGGTGCACCATGATTAAGGAACTTGACATCAGCTATTGCCATGAAATATCTCCGGAGTCTCTGGTGTTGATTGGGAAGAATTGCCCTAATCTCACAATTGTTAAATGGAATGCATTGAATTTGCTAGATCCTTCTGAACACGCTGGGATTGTTCCTGAGGAGTATTTAAAAACTTGCCCTGAAGATGGAAATTCAGAAGTTGATGCAATTGGCAAATCAGAGCACAACATGTTTGTTAGGATATGGAAGTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

121

Amino Acids

13.61

Weight (kDa)

4.96

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	30
AccIII	TCCGGA	1 cut(s)	157
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	223, 295
AcuI	CTGAAG	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	2 cut(s)	138, 360
AluI	AGCT	2 cut(s)	138, 360
Alw21I	GWGCWC	2 cut(s)	113, 330
Alw26I	GTCTC	1 cut(s)	168
Alw44I	GTGCAC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	157
ApaLI	GTGCAC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	2 cut(s)	223, 295
AxyI	CCTNAGG	1 cut(s)	261
BaeGI	GKGCMC	2 cut(s)	35, 113
BanI	GGYRCC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	113, 330
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	2 cut(s)	95, 284
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	230
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	32
BmsI	GCATC	4 cut(s)	6, 70, 92, 298
BpuEI	CTTGAG	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse21I	CCTNAGG	1 cut(s)	261
BseAI	TCCGGA	1 cut(s)	157
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	17, 252
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	2 cut(s)	35, 113
BseXI	GCAGC	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	30
BsiHKAI	GWGCWC	2 cut(s)	113, 330
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	220
Bsp1286I	GDGCHC	3 cut(s)	35, 113, 330
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	54, 232
BspCNI	CTCAG	2 cut(s)	18, 253
BspEI	TCCGGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	30
BssMI	GATC	2 cut(s)	54, 232
BstDEI	CTNAG	2 cut(s)	26, 261
BstF5I	GGATG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	57, 235
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	54, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	337
BstSLI	GKGCMC	2 cut(s)	35, 113
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
Bsu36I	CCTNAGG	1 cut(s)	261
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	83
CviAII	CATG	3 cut(s)	115, 146, 334
CviJI	RGCY	2 cut(s)	138, 360
CviKI_1	RGCY	2 cut(s)	138, 360
DdeI	CTNAG	2 cut(s)	26, 261
DpnI	GATC	2 cut(s)	56, 234
DpnII	GATC	2 cut(s)	54, 232
DraI	TTTAAA	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	261
EcoT22I	ATGCAT	2 cut(s)	85, 220
FaeI	CATG	3 cut(s)	118, 149, 337
FaiI	YATR	5 cut(s)	98, 116, 147, 335, 349
FatI	CATG	3 cut(s)	114, 145, 333
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	1 cut(s)	64
GsaI	CCCAGC	1 cut(s)	252
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	3 cut(s)	118, 149, 337
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	4 cut(s)	27, 241, 301, 325
Hpy188III	TCNNGA	2 cut(s)	158, 260
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	83, 111, 218, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	26, 261
Hsp92II	CATG	3 cut(s)	118, 149, 337
Kpn2I	TCCGGA	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	54, 232
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	5 cut(s)	152, 171, 234, 273, 297
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	4 cut(s)	6, 70, 92, 298
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	56, 234
MboI	GATC	2 cut(s)	54, 232
MboII	GAAGA	2 cut(s)	193, 299
MfeI	CAATTG	2 cut(s)	201, 312
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	3 cut(s)	35, 113, 330
MluCI	AATT	5 cut(s)	184, 201, 223, 295, 312
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	3 cut(s)	21, 37, 256
Mph1103I	ATGCAT	2 cut(s)	85, 220
MroI	TCCGGA	1 cut(s)	157
MseI	TTAA	3 cut(s)	120, 207, 272
MspI	CCGG	1 cut(s)	158
MunI	CAATTG	2 cut(s)	201, 312
Mva1269I	GAATGC	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	2 cut(s)	54, 232
NlaIII	CATG	3 cut(s)	118, 149, 337
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	2 cut(s)	85, 220
NspI	RCATGY	1 cut(s)	337
PciI	ACATGT	1 cut(s)	333
PctI	GAATGC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PscI	ACATGT	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	232
SaqAI	TTAA	3 cut(s)	120, 207, 272
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	2 cut(s)	54, 232
SchI	GAGTC	1 cut(s)	170
SduI	GDGCHC	3 cut(s)	35, 113, 330
SetI	ASST	5 cut(s)	32, 42, 48, 140, 362
SfaNI	GCATC	4 cut(s)	6, 70, 92, 298
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	5 cut(s)	184, 201, 223, 295, 312
SspMI	CTAG	1 cut(s)	230
TaqI	TCGA	1 cut(s)	53
TasI	AATT	5 cut(s)	184, 201, 223, 295, 312
Tru1I	TTAA	3 cut(s)	120, 207, 272
Tru9I	TTAA	3 cut(s)	120, 207, 272
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	162
VneI	GTGCAC	1 cut(s)	109
XapI	RAATTY	2 cut(s)	223, 295
XceI	RCATGY	1 cut(s)	337
XspI	CTAG	1 cut(s)	230
Zsp2I	ATGCAT	2 cut(s)	85, 220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.