RchiOBHm_Chr2g0085481

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002120
Physical Location & Seq
Reverse (-)
887315 .. 888791
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46103

Sequence Viewer

Length: 936 bp
ATGGACCGAACCAATAATGAAGAAGAACCACCAGTGACCGACGACTCCGACTCCGACTCCGACTGGGGCGGGTTGACCTGCGAGTGCCTCGCCAACATCCTCGCCCGGCTTCCCTTGGAGCACCGATGGCGTGCGATGCTCCTCTGCAAATCATGGCTGCTCGCCTGCAAGGACCCGCATCTCAACTCGCGCTTCGTCCTCGAGCCCGAGCCCGAGTACGGGTCGGCTCAGTGGTGGGCCCCCGAGTTGGGGAGAAGGGTCGATTCCATTCTCCGATCTGTTGCTGAATGGAGCGAGGGGTCGCTTAGGGAGATTCGCACCCGGAACTGCTCTAATGAATCTCTCCATTTCGTCGCCCAAAGGTGCCCAAACCTTGAGGTTCTTTCGATCAAGTGCTGCCCAAATGTGACTGATGCATCCATGGCTGACATAGCGTTTCGGTGCACCATGATTAAGGAACTTGACATCAGCTATTGCCATGAAATATCTCACGAGTCTCTGGTGTTGATTGGGAAGAATTGCCCTAATCTCACAATTGTTAAACGGAATGCGTTGAATTTGCTGGATCCTTCTGAACACGCTGGGATTGTTCCTGAGGAGTATTTCAAAACTTGCCCTCAAGATGGAAATTCAGAAGCTGATGCAATTGGCAAATCTATGCCGAATCTCAAGCACCTTGAACTAAGGTTCTCCAAGGTAACAGCAAAAGGCCTTGGTTTGATATCTGCAGGGTGTCTGAAACTTGAGTACTTGGATGTGTTTGGGTGTGTAAACTTGAATAGTCGTGATATCAACAATGCAACATCCGAGCTGAAGAACTTGAAGGAGATTAAAAAGCCAAATTTCTACATCCCTAGGTCGGTTTTCCATACGGAGAGGTATGGACATTGGAGGCTGTATGATGAGAGATTTCAAACAGATATTTTCAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

311

Amino Acids

35.47

Weight (kDa)

5.66

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 62 9.8e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 363
AccII CGCG 1 cut(s) 190
AciI CCGC 2 cut(s) 69, 176
AclWI GGATC 2 cut(s) 560, 573
AcsI RAATTY 3 cut(s) 556, 628, 841
AcuI CTGAAG 1 cut(s) 833
AfaI GTAC 2 cut(s) 218, 749
AfiI CCNNNNNNNGG 7 cut(s) 218, 219, 247, 248, 249, 623, 859
AgsI TTSAA 6 cut(s) 556, 607, 680, 778, 823, 914
AluBI AGCT 3 cut(s) 471, 638, 811
AluI AGCT 3 cut(s) 471, 638, 811
Alw21I GWGCWC 2 cut(s) 123, 446
Alw26I GTCTC 1 cut(s) 501
Alw44I GTGCAC 1 cut(s) 442
AlwI GGATC 2 cut(s) 560, 573
AlwNI CAGNNNCTG 1 cut(s) 638
Ama87I CYCGRG 4 cut(s) 200, 206, 212, 242
AoxI GGCC 2 cut(s) 237, 709
ApaI GGGCCC 1 cut(s) 241
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 2 cut(s) 157, 396
ApoI RAATTY 3 cut(s) 556, 628, 841
AspA2I CCTAGG 1 cut(s) 854
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 4 cut(s) 4, 172, 237, 238
AsuC2I CCSGG 2 cut(s) 106, 322
AvaI CYCGRG 4 cut(s) 200, 206, 212, 242
AvaII GGWCC 2 cut(s) 4, 172
AvrII CCTAGG 1 cut(s) 854
AxyI CCTNAGG 1 cut(s) 594
BaeGI GKGCMC 3 cut(s) 241, 368, 446
BamHI GGATCC 1 cut(s) 565
BanI GGYRCC 1 cut(s) 363
BanII GRGCYC 3 cut(s) 207, 213, 241
BauI CACGAG 1 cut(s) 491
Bbv12I GWGCWC 2 cut(s) 123, 446
BbvI GCAGC 2 cut(s) 144, 383
BccI CCATC 2 cut(s) 120, 617
BcnI CCSGG 2 cut(s) 106, 322
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 1 cut(s) 855
BfmI CTRYAG 1 cut(s) 726
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 2 cut(s) 158, 397
BlnI CCTAGG 1 cut(s) 854
BlsI GCNGC 2 cut(s) 159, 398
BmcAI AGTACT 1 cut(s) 749
Bme1390I CCNGG 2 cut(s) 106, 322
Bme18I GGWCC 2 cut(s) 4, 172
BmeT110I CYCGRG 4 cut(s) 200, 206, 212, 242
BmgT120I GGNCC 4 cut(s) 4, 172, 237, 238
BmiI GGNNCC 5 cut(s) 174, 239, 240, 365, 567
BmrFI CCNGG 2 cut(s) 106, 322
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 5 cut(s) 126, 187, 403, 425, 631
BmuI ACTGGG 1 cut(s) 73
Bpu10I CCTNAGC 1 cut(s) 305
BpuEI CTTGAG 4 cut(s) 395, 603, 653, 764
BpuMI CCSGG 2 cut(s) 106, 322
BsaJI CCNNGG 5 cut(s) 114, 420, 693, 712, 854
BsaXI ACNNNNNCTCC 4 cut(s) 35, 41, 65, 71
Bsc4I CCNNNNNNNGG 7 cut(s) 218, 219, 247, 248, 249, 623, 859
Bse1I ACTGG 2 cut(s) 32, 68
Bse21I CCTNAGG 1 cut(s) 594
BseDI CCNNGG 5 cut(s) 114, 420, 693, 712, 854
BseGI GGATG 5 cut(s) 96, 416, 760, 803, 849
BseLI CCNNNNNNNGG 7 cut(s) 218, 219, 247, 248, 249, 623, 859
BseMII CTCAG 2 cut(s) 242, 585
BseNI ACTGG 2 cut(s) 32, 68
BseRI GAGGAG 2 cut(s) 131, 611
BseSI GKGCMC 3 cut(s) 241, 368, 446
BseXI GCAGC 2 cut(s) 144, 383
BseYI CCCAGC 1 cut(s) 581
Bsh1236I CGCG 1 cut(s) 190
BshFI GGCC 2 cut(s) 239, 711
BshNI GGYRCC 1 cut(s) 363
BsiHKAI GWGCWC 2 cut(s) 123, 446
BsiHKCI CYCGRG 4 cut(s) 200, 206, 212, 242
BsiSI CCGG 2 cut(s) 106, 322
BslI CCNNNNNNNGG 7 cut(s) 218, 219, 247, 248, 249, 623, 859
BsmAI GTCTC 1 cut(s) 501
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 2 cut(s) 239, 711
BsoBI CYCGRG 4 cut(s) 200, 206, 212, 242
Bsp120I GGGCCC 1 cut(s) 237
Bsp1286I GDGCHC 6 cut(s) 123, 207, 213, 241, 368, 446
Bsp143I GATC 3 cut(s) 275, 387, 565
Bsp19I CCATGG 1 cut(s) 420
BspACI CCGC 2 cut(s) 69, 176
BspANI GGCC 2 cut(s) 239, 711
BspCNI CTCAG 2 cut(s) 241, 586
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 5 cut(s) 174, 239, 240, 365, 567
BspMAI CTGCAG 1 cut(s) 730
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 560, 573
BspT107I GGYRCC 1 cut(s) 363
BsrI ACTGG 2 cut(s) 32, 68
BssECI CCNNGG 5 cut(s) 114, 420, 693, 712, 854
BssMI GATC 3 cut(s) 275, 387, 565
BssSI CACGAG 1 cut(s) 491
BssT1I CCWWGG 5 cut(s) 114, 420, 693, 712, 854
Bst2BI CACGAG 1 cut(s) 491
BstC8I GCNNGC 3 cut(s) 132, 162, 166
BstDEI CTNAG 4 cut(s) 228, 305, 594, 683
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 5 cut(s) 96, 416, 760, 803, 849
BstFNI CGCG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 3 cut(s) 278, 390, 568
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 3 cut(s) 275, 387, 565
BstMWI GCNNNNNNNGC 4 cut(s) 127, 136, 422, 431
BstSCI CCNGG 2 cut(s) 104, 320
BstSFI CTRYAG 1 cut(s) 726
BstSLI GKGCMC 3 cut(s) 241, 368, 446
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 2 cut(s) 144, 383
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
Bsu36I CCTNAGG 1 cut(s) 594
BsuRI GGCC 2 cut(s) 239, 711
BtgI CCRYGG 1 cut(s) 420
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 5 cut(s) 96, 416, 760, 803, 849
BtsIMutI CAGTG 2 cut(s) 39, 236
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 3 cut(s) 132, 162, 166
CaiI CAGNNNCTG 1 cut(s) 638
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 4 cut(s) 4, 172, 237, 238
Csp6I GTAC 2 cut(s) 217, 748
CviAII CATG 4 cut(s) 153, 421, 448, 479
CviQI GTAC 2 cut(s) 217, 748
DdeI CTNAG 4 cut(s) 228, 305, 594, 683
DpnI GATC 3 cut(s) 277, 389, 567
DpnII GATC 3 cut(s) 275, 387, 565
Eco130I CCWWGG 5 cut(s) 114, 420, 693, 712, 854
Eco147I AGGCCT 1 cut(s) 711
Eco24I GRGCYC 3 cut(s) 207, 213, 241
Eco32I GATATC 2 cut(s) 723, 790
Eco47I GGWCC 2 cut(s) 4, 172
Eco57I CTGAAG 1 cut(s) 833
Eco81I CCTNAGG 1 cut(s) 594
Eco88I CYCGRG 4 cut(s) 200, 206, 212, 242
EcoO109I RGGNCCY 2 cut(s) 172, 238
EcoRV GATATC 2 cut(s) 723, 790
EcoT14I CCWWGG 5 cut(s) 114, 420, 693, 712, 854
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 3 cut(s) 207, 213, 241
ErhI CCWWGG 5 cut(s) 114, 420, 693, 712, 854
FaeI CATG 4 cut(s) 156, 424, 451, 482
FaiI YATR 9 cut(s) 154, 422, 431, 449, 480, 659, 870, 882, 900
FatI CATG 4 cut(s) 152, 420, 447, 478
FauI CCCGC 2 cut(s) 62, 183
Fnu4HI GCNGC 2 cut(s) 158, 397
FokI GGATG 5 cut(s) 83, 403, 767, 790, 836
FriOI GRGCYC 3 cut(s) 207, 213, 241
Fsp4HI GCNGC 2 cut(s) 158, 397
FspBI CTAG 1 cut(s) 855
GlaI GCGC 1 cut(s) 191
GluI GCNGC 2 cut(s) 158, 397
GsaI CCCAGC 1 cut(s) 585
HaeIII GGCC 2 cut(s) 239, 711
HapII CCGG 2 cut(s) 106, 322
HhaI GCGC 1 cut(s) 192
Hin1II CATG 4 cut(s) 156, 424, 451, 482
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HinfI GANTC 9 cut(s) 44, 50, 56, 263, 313, 338, 494, 664, 930
HpaII CCGG 2 cut(s) 106, 322
Hpy166II GTNNAC 3 cut(s) 75, 444, 772
Hpy188I TCNGA 9 cut(s) 49, 55, 61, 275, 574, 634, 738, 808, 929
Hpy188III TCNNGA 4 cut(s) 491, 593, 620, 785
Hpy8I GTNNAC 3 cut(s) 75, 444, 772
Hpy99I CGWCG 2 cut(s) 44, 356
HpyAV CCTTC 3 cut(s) 249, 579, 817
HpyCH4V TGCA 7 cut(s) 147, 168, 416, 444, 644, 728, 800
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 136, 422, 431
HpyF3I CTNAG 4 cut(s) 228, 305, 594, 683
Hsp92II CATG 4 cut(s) 156, 424, 451, 482
HspAI GCGC 1 cut(s) 190
Kzo9I GATC 3 cut(s) 275, 387, 565
LmnI GCTCC 3 cut(s) 118, 144, 291
Lsp1109I GCAGC 2 cut(s) 144, 383
LweI GCATC 5 cut(s) 126, 187, 403, 425, 631
MaeI CTAG 1 cut(s) 855
MaeIII GTNAC 3 cut(s) 34, 406, 697
MalI GATC 3 cut(s) 277, 389, 567
MboI GATC 3 cut(s) 275, 387, 565
MboII GAAGA 4 cut(s) 32, 35, 526, 826
MfeI CAATTG 2 cut(s) 534, 645
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 6 cut(s) 123, 207, 213, 241, 368, 446
MluCI AATT 6 cut(s) 517, 534, 556, 628, 645, 841
MlyI GAGTC 4 cut(s) 38, 44, 50, 503
MmeI TCCRAC 3 cut(s) 72, 78, 84
Mph1103I ATGCAT 1 cut(s) 418
MseI TTAA 3 cut(s) 453, 540, 831
MspI CCGG 2 cut(s) 106, 322
MspR9I CCNGG 2 cut(s) 106, 322
MunI CAATTG 2 cut(s) 534, 645
Mva1269I GAATGC 1 cut(s) 553
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 4 cut(s) 127, 136, 422, 431
NciI CCSGG 2 cut(s) 106, 322
NcoI CCATGG 1 cut(s) 420
NdeII GATC 3 cut(s) 275, 387, 565
NlaIII CATG 4 cut(s) 156, 424, 451, 482
NlaIV GGNNCC 5 cut(s) 174, 239, 240, 365, 567
NmuCI GTSAC 2 cut(s) 34, 406
NsiI ATGCAT 1 cut(s) 418
PaeR7I CTCGAG 1 cut(s) 200
PceI AGGCCT 1 cut(s) 711
PctI GAATGC 1 cut(s) 553
PfeI GAWTC 5 cut(s) 263, 313, 338, 664, 930
PkrI GCNGC 2 cut(s) 159, 398
PleI GAGTC 4 cut(s) 38, 44, 50, 502
PpsI GAGTC 4 cut(s) 38, 44, 50, 502
PpuMI RGGWCCY 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 581
PspN4I GGNNCC 5 cut(s) 174, 239, 240, 365, 567
PspOMI GGGCCC 1 cut(s) 237
PspPI GGNCC 4 cut(s) 4, 172, 237, 238
PspPPI RGGWCCY 1 cut(s) 172
PspXI VCTCGAGB 1 cut(s) 200
PstI CTGCAG 1 cut(s) 730
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 565
RsaI GTAC 2 cut(s) 218, 749
RsaNI GTAC 2 cut(s) 217, 748
SaqAI TTAA 3 cut(s) 453, 540, 831
SatI GCNGC 2 cut(s) 158, 397
Sau3AI GATC 3 cut(s) 275, 387, 565
Sau96I GGNCC 4 cut(s) 4, 172, 237, 238
ScaI AGTACT 1 cut(s) 749
SchI GAGTC 4 cut(s) 38, 44, 50, 503
ScrFI CCNGG 2 cut(s) 106, 322
SduI GDGCHC 6 cut(s) 123, 207, 213, 241, 368, 446
SfaNI GCATC 5 cut(s) 126, 187, 403, 425, 631
SfcI CTRYAG 1 cut(s) 726
Sfr274I CTCGAG 1 cut(s) 200
SinI GGWCC 2 cut(s) 4, 172
SlaI CTCGAG 1 cut(s) 200
SmlI CTYRAG 5 cut(s) 200, 374, 618, 668, 743
SmoI CTYRAG 5 cut(s) 200, 374, 618, 668, 743
Sse9I AATT 6 cut(s) 517, 534, 556, 628, 645, 841
SseBI AGGCCT 1 cut(s) 711
SsiI CCGC 2 cut(s) 69, 176
SspMI CTAG 1 cut(s) 855
StuI AGGCCT 1 cut(s) 711
StyD4I CCNGG 2 cut(s) 104, 320
StyI CCWWGG 5 cut(s) 114, 420, 693, 712, 854
TaqI TCGA 3 cut(s) 201, 261, 386
TaqII GACCGA 2 cut(s) 21, 53
TasI AATT 6 cut(s) 517, 534, 556, 628, 645, 841
TatI WGTACW 1 cut(s) 747
TfiI GAWTC 5 cut(s) 263, 313, 338, 664, 930
Tru1I TTAA 3 cut(s) 453, 540, 831
Tru9I TTAA 3 cut(s) 453, 540, 831
TscAI CASTG 2 cut(s) 39, 236
TseFI GTSAC 2 cut(s) 34, 406
TseI GCWGC 2 cut(s) 157, 396
Tsp45I GTSAC 2 cut(s) 34, 406
TspDTI ATGAA 3 cut(s) 33, 351, 495
TspGWI ACGGA 2 cut(s) 559, 887
TspRI CASTG 2 cut(s) 39, 236
VneI GTGCAC 1 cut(s) 442
VpaK11BI GGWCC 2 cut(s) 4, 172
XapI RAATTY 3 cut(s) 556, 628, 841
XhoI CTCGAG 1 cut(s) 200
XmaJI CCTAGG 1 cut(s) 854
XspI CTAG 1 cut(s) 855
ZrmI AGTACT 1 cut(s) 749
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.