Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Forward (+)

60479165 .. 60480055

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015002

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGTATGGATAAATCCCCAGCAACTACTACTGTTGCTAACATGGAGTTCAACATCTCACCTGAGCCCTCTACTGTCATGGTTTCGAGTGCAGCAAACTCACCTGAGCCTAATTTTTCTACTGCTAGCATGGAGACCAATCTCTCACTTGAGCCATCTACTATTGAAAATCCGAGTCCAGCTAGTTCAACTCCCATCACAGGGGTTGATGCCATGAATGAAAAACCACCAACATCCATTGACCAACTTCCCAAGCTTAATAACTCTTCTGAACCAAAAGTTGTTAAGGTTTGGAAGAAAGTTCAGGAAAAAATAACCAATTCTGTGGATGATGGTGCTACTGTGAAGTCCACAATTATTGATGCCAACTCTACCAATACTTCTACAGTGGCTCTTCATGATATTACCAATGGCAAGGCTCATGTTAAAACTACCAAATCTGCTGCTTCTACTTCCAAACCTGCTGTTAGAAAGTCGTCTCTGATGAAGCATGATCCGGCTAGAAAGACTGCTTTTCCAAGTTTGACAACTTTAATCAATGGTGTTCATGCTTCTCCTATTCGCAATAATACTTCTGCCTTGTTTGGACATTGTCCACCTGTAATTTTGAAGAATGACAGCAACAACATATCACAGGACACAAACAGCAGTGGTCAGGTTTGTTCTGACCCTGTTATTGATAATATAATGCATGATAACATTTCATATGTTGATATCAACAATCACAGCCTACCCTCTAATGTGGAGGGTATGGCTGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

26.9

Weight (kDa)

5.77

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	469
AclWI	GGATC	1 cut(s)	488
AfiI	CCNNNNNNNGG	2 cut(s)	200, 201
AgsI	TTSAA	4 cut(s)	52, 167, 189, 610
AluBI	AGCT	2 cut(s)	182, 256
AluI	AGCT	2 cut(s)	182, 256
Alw26I	GTCTC	2 cut(s)	128, 483
AlwI	GGATC	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	92, 443
AsuHPI	GGTGA	2 cut(s)	51, 93
AsuNHI	GCTAGC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	104, 430
BccI	CCATC	3 cut(s)	163, 203, 326
BcoDI	GTCTC	2 cut(s)	128, 483
BfaI	CTAG	3 cut(s)	126, 183, 501
BfmI	CTRYAG	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	469
BisI	GCNGC	2 cut(s)	93, 444
BlsI	GCNGC	2 cut(s)	94, 445
BmsI	GCATC	2 cut(s)	199, 352
BmtI	GCTAGC	1 cut(s)	129
Bpu10I	CCTNAGC	2 cut(s)	63, 105
BpuEI	CTTGAG	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 201
BseGI	GGATG	2 cut(s)	233, 334
BseLI	CCNNNNNNNGG	2 cut(s)	200, 201
BseMII	CTCAG	2 cut(s)	54, 96
BseXI	GCAGC	2 cut(s)	104, 430
BseYI	CCCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	200, 201
BsmAI	GTCTC	2 cut(s)	128, 483
BsmBI	CGTCTC	1 cut(s)	483
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	493
BspCNI	CTCAG	2 cut(s)	55, 97
BspHI	TCATGA	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	469
BspOI	GCTAGC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	488
BspQI	GCTCTTC	1 cut(s)	399
BspTNI	GGTCTC	1 cut(s)	128
BssMI	GATC	1 cut(s)	493
Bst4CI	ACNGT	4 cut(s)	34, 76, 343, 388
Bst6I	CTCTTC	2 cut(s)	271, 399
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	63, 105
BstF5I	GGATG	2 cut(s)	233, 334
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	2 cut(s)	128, 483
BstMBI	GATC	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	104, 430
BstXI	CCANNNNNNTGG	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	233, 334
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	2 cut(s)	393, 655
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	127
CciI	TCATGA	1 cut(s)	397
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	9 cut(s)	43, 79, 130, 214, 398, 422, 491, 548, 692
DdeI	CTNAG	2 cut(s)	63, 105
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
Eam1104I	CTCTTC	2 cut(s)	271, 399
EarI	CTCTTC	2 cut(s)	271, 399
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	128
Eco32I	GATATC	1 cut(s)	715
EcoRV	GATATC	1 cut(s)	715
EcoT22I	ATGCAT	1 cut(s)	693
EcoT38I	GRGCYC	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	9 cut(s)	46, 82, 133, 217, 401, 425, 494, 551, 695
FatI	CATG	9 cut(s)	42, 78, 129, 213, 397, 421, 490, 547, 691
FauNDI	CATATG	1 cut(s)	706
Fnu4HI	GCNGC	2 cut(s)	93, 444
FokI	GGATG	2 cut(s)	220, 341
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	93, 444
FspBI	CTAG	3 cut(s)	126, 183, 501
GluI	GCNGC	2 cut(s)	93, 444
GsaI	CCCAGC	1 cut(s)	23
HapII	CCGG	1 cut(s)	497
Hin1II	CATG	9 cut(s)	46, 82, 133, 217, 401, 425, 494, 551, 695
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	175, 758
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	2 cut(s)	51, 93
Hpy166II	GTNNAC	2 cut(s)	351, 596
Hpy188I	TCNGA	4 cut(s)	174, 271, 483, 667
Hpy188III	TCNNGA	2 cut(s)	305, 398
Hpy8I	GTNNAC	2 cut(s)	351, 596
HpyCH4III	ACNGT	4 cut(s)	34, 76, 343, 388
HpyCH4V	TGCA	2 cut(s)	92, 691
HpyF3I	CTNAG	2 cut(s)	63, 105
Hsp92II	CATG	9 cut(s)	46, 82, 133, 217, 401, 425, 494, 551, 695
Kzo9I	GATC	1 cut(s)	493
LguI	GCTCTTC	1 cut(s)	399
Lsp1109I	GCAGC	2 cut(s)	104, 430
LweI	GCATC	2 cut(s)	199, 352
MaeI	CTAG	3 cut(s)	126, 183, 501
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	4 cut(s)	258, 307, 386, 622
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	4 cut(s)	112, 319, 354, 603
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	3 cut(s)	79, 739, 745
Mph1103I	ATGCAT	1 cut(s)	693
MseI	TTAA	5 cut(s)	258, 285, 426, 533, 763
MspI	CCGG	1 cut(s)	497
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	1 cut(s)	493
NheI	GCTAGC	1 cut(s)	125
NlaIII	CATG	9 cut(s)	46, 82, 133, 217, 401, 425, 494, 551, 695
NsiI	ATGCAT	1 cut(s)	693
PagI	TCATGA	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	758
PflFI	GACNNNGTC	1 cut(s)	591
PkrI	GCNGC	2 cut(s)	94, 445
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	591
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	5 cut(s)	258, 285, 426, 533, 763
SatI	GCNGC	2 cut(s)	93, 444
Sau3AI	GATC	1 cut(s)	493
SchI	GAGTC	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	8 cut(s)	64, 106, 184, 258, 291, 463, 601, 660
SfaNI	GCATC	2 cut(s)	199, 352
SfcI	CTRYAG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	4 cut(s)	112, 319, 354, 603
SspMI	CTAG	3 cut(s)	126, 183, 501
TaaI	ACNGT	4 cut(s)	34, 76, 343, 388
TaqI	TCGA	1 cut(s)	86
TasI	AATT	4 cut(s)	112, 319, 354, 603
TfiI	GAWTC	1 cut(s)	758
Tru1I	TTAA	5 cut(s)	258, 285, 426, 533, 763
Tru9I	TTAA	5 cut(s)	258, 285, 426, 533, 763
TscAI	CASTG	2 cut(s)	393, 655
TseI	GCWGC	2 cut(s)	92, 443
TspDTI	ATGAA	6 cut(s)	230, 234, 386, 500, 536, 693
TspRI	CASTG	2 cut(s)	393, 655
Tth111I	GACNNNGTC	1 cut(s)	591
XspI	CTAG	3 cut(s)	126, 183, 501
Zsp2I	ATGCAT	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.