MD02G1006200.v1.1

f-box protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
430412 .. 436974
6563 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1006200.v1.1.491

Sequence Viewer

Length: 927 bp
ATGGACACAACCGACACCGAAGAAACTGTGACACCTGACTGGGCCGAGTTGACCCAGGAGTGCCTGATCAATATCCTGGGTCGGCTCACCCTGGAGCACCGATGGAGTGGGGCGATGCTGGTCTGCAAGCCGTGGCTGCAGGTGTGCAAGGATCCCTGCCTCAACTCAGCCTTCGACCTCGAGCCGCTGTTCGACCTCGAGCGGCCGTTCGAATCCGAGGGGTGGTGGACTCCGGAGTTCGAGCGGCGGATCGATTCCATGCTCCGATCTGTCGTCCATTGGAGCGCCGGCTCGTTGAAACAGATTCGTACCAGGCACTGCTCCGACCAGTCTCTCTCGCACGTCGCTCAGAGGTGCCCGAACCTCGAGGTTCTTTCGATCAAGAGCTGCCCGAATGTGACTGATTCGTCCATGGCTGATATAGCGATTCGCTGCCCCATGATCCGGGAACTTGATATCAGCTATTGCCATGAAGTATCTCATGAGTCTCTGGTGTTGATTGGGAGGAACTGCCCAAATCTGAAAATCTTGAAGCGGAATATGCTGAACTGGTTAGATCCATCCGAATACACTGGAGTTGTTCCAGATGAGTACTTAAAAACTTGCCCTCAGGATGGAAATTCAGAAGCTGCTGCAATTGGCAAATCTATGCCAAATTTGGAGCACCTTGAACTTCGGTTCTCAAAGGTATCGGCTAAAGGGTTTACTTTGATACCTGTAGGATGTCCAAATCTCGAGTACTTGGATTTATTTGGGTGTGTGAACTTGACTAGCCGGGATATTGAGAACACAACATGCAATCTGAAGAATTTGAAGGAGATTAAAAAGCCAAACTTCTACATTCCACGGTCAGTCTTCCATTCGGAGAGGTATGGCCATTGGAGGTTGTATGACGAGCGATTCCAGACAGATGTTTTCAGAATCTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

309

Amino Acids

35.49

Weight (kDa)

5.54

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
AasI GACNNNNNNGTC 1 cut(s) 406
AbsI CCTCGAGG 1 cut(s) 365
Acc36I ACCTGC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 354
AccBSI CCGCTC 2 cut(s) 202, 244
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 5 cut(s) 185, 202, 244, 247, 535
AclWI GGATC 5 cut(s) 146, 159, 257, 436, 551
AcoI YGGCCR 2 cut(s) 203, 874
AcsI RAATTY 3 cut(s) 619, 655, 808
AcuI CTGAAG 1 cut(s) 824
AfaI GTAC 3 cut(s) 310, 593, 740
AfiI CCNNNNNNNGG 3 cut(s) 222, 444, 614
AgsI TTSAA 4 cut(s) 298, 532, 671, 814
AjiI CACGTC 1 cut(s) 343
AjnI CCWGG 4 cut(s) 54, 75, 90, 311
AluBI AGCT 3 cut(s) 387, 462, 629
AluI AGCT 3 cut(s) 387, 462, 629
Alw21I GWGCWC 2 cut(s) 99, 666
Alw26I GTCTC 2 cut(s) 336, 492
AlwI GGATC 5 cut(s) 146, 159, 257, 436, 551
AlwNI CAGNNNCTG 2 cut(s) 318, 629
Ama87I CYCGRG 4 cut(s) 179, 197, 365, 734
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 3 cut(s) 42, 203, 874
ApeKI GCWGC 5 cut(s) 136, 387, 432, 629, 632
ApoI RAATTY 3 cut(s) 619, 655, 808
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 42
AsuC2I CCSGG 2 cut(s) 446, 776
AsuHPI GGTGA 1 cut(s) 79
AsuII TTCGAA 1 cut(s) 210
AvaI CYCGRG 4 cut(s) 179, 197, 365, 734
AxyI CCTNAGG 1 cut(s) 609
BaeGI GKGCMC 1 cut(s) 359
BalI TGGCCA 1 cut(s) 876
BamHI GGATCC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 847
Bbv12I GWGCWC 2 cut(s) 99, 666
BbvI GCAGC 5 cut(s) 123, 374, 419, 616, 619
BccI CCATC 3 cut(s) 96, 568, 608
BceAI ACGGC 2 cut(s) 115, 190
BciT130I CCWGG 4 cut(s) 56, 77, 92, 313
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 2 cut(s) 446, 776
BcoDI GTCTC 2 cut(s) 336, 492
BfaI CTAG 2 cut(s) 771, 925
BfmI CTRYAG 2 cut(s) 137, 717
BfoI RGCGCY 1 cut(s) 288
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 8 cut(s) 137, 185, 203, 245, 388, 433, 630, 633
BlsI GCNGC 8 cut(s) 138, 186, 204, 246, 389, 434, 631, 634
BmcAI AGTACT 2 cut(s) 593, 740
Bme1390I CCNGG 6 cut(s) 56, 77, 92, 313, 446, 776
BmeT110I CYCGRG 4 cut(s) 179, 197, 365, 734
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 2 cut(s) 153, 356
BmrFI CCNGG 6 cut(s) 56, 77, 92, 313, 446, 776
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 847
BpmI CTGGAG 2 cut(s) 113, 594
Bpu14I TTCGAA 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 446, 776
Bsa29I ATCGAT 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 7 cut(s) 54, 76, 90, 131, 216, 411, 845
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 3 cut(s) 222, 444, 614
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 4 cut(s) 44, 328, 554, 577
Bse21I CCTNAGG 1 cut(s) 609
Bse8I GATNNNNATC 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 4 cut(s) 56, 77, 92, 313
BseCI ATCGAT 1 cut(s) 252
BseDI CCNNGG 7 cut(s) 54, 76, 90, 131, 216, 411, 845
BseGI GGATG 3 cut(s) 560, 619, 728
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 3 cut(s) 222, 444, 614
BseMII CTCAG 3 cut(s) 180, 362, 623
BseNI ACTGG 4 cut(s) 44, 328, 554, 577
BseSI GKGCMC 1 cut(s) 359
BseX3I CGGCCG 1 cut(s) 203
BseXI GCAGC 5 cut(s) 123, 374, 419, 616, 619
Bsh1285I CGRYCG 1 cut(s) 206
BshFI GGCC 3 cut(s) 44, 205, 876
BshNI GGYRCC 1 cut(s) 354
BshVI ATCGAT 1 cut(s) 252
BsiEI CGRYCG 1 cut(s) 206
BsiHKAI GWGCWC 2 cut(s) 99, 666
BsiHKCI CYCGRG 4 cut(s) 179, 197, 365, 734
BsiSI CCGG 4 cut(s) 233, 288, 445, 775
BslI CCNNNNNNNGG 3 cut(s) 222, 444, 614
BsmAI GTCTC 2 cut(s) 336, 492
BsnI GGCC 3 cut(s) 44, 205, 876
BsoBI CYCGRG 4 cut(s) 179, 197, 365, 734
Bsp119I TTCGAA 1 cut(s) 210
Bsp1286I GDGCHC 3 cut(s) 99, 359, 666
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 7 cut(s) 66, 151, 249, 266, 378, 441, 556
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 5 cut(s) 185, 202, 244, 247, 535
BspANI GGCC 3 cut(s) 44, 205, 876
BspCNI CTCAG 3 cut(s) 179, 361, 622
BspDI ATCGAT 1 cut(s) 252
BspEI TCCGGA 1 cut(s) 232
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 153, 356
BspMAI CTGCAG 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 5 cut(s) 146, 159, 257, 436, 551
BspT104I TTCGAA 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 354
BsrBI CCGCTC 2 cut(s) 202, 244
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 4 cut(s) 44, 328, 554, 577
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 7 cut(s) 54, 76, 90, 131, 216, 411, 845
BssMI GATC 7 cut(s) 66, 151, 249, 266, 378, 441, 556
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 4 cut(s) 56, 77, 92, 313
Bst4CI ACNGT 2 cut(s) 28, 849
BstBI TTCGAA 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 128, 289
BstDEI CTNAG 3 cut(s) 166, 348, 609
BstDSI CCRYGG 3 cut(s) 131, 411, 845
BstF5I GGATG 3 cut(s) 560, 619, 728
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 7 cut(s) 69, 154, 252, 269, 381, 444, 559
BstMAI GTCTC 2 cut(s) 336, 492
BstMBI GATC 7 cut(s) 66, 151, 249, 266, 378, 441, 556
BstMCI CGRYCG 1 cut(s) 206
BstMWI GCNNNNNNNGC 3 cut(s) 136, 422, 541
BstNI CCWGG 4 cut(s) 56, 77, 92, 313
BstNSI RCATGY 1 cut(s) 798
BstSCI CCNGG 6 cut(s) 54, 75, 90, 311, 444, 774
BstSFI CTRYAG 2 cut(s) 137, 717
BstSLI GKGCMC 1 cut(s) 359
BstV1I GCAGC 5 cut(s) 123, 374, 419, 616, 619
BstV2I GAAGAC 1 cut(s) 847
BstX2I RGATCY 2 cut(s) 151, 556
BstYI RGATCY 2 cut(s) 151, 556
BstZI CGGCCG 1 cut(s) 203
Bsu15I ATCGAT 1 cut(s) 252
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 3 cut(s) 44, 205, 876
BsuTUI ATCGAT 1 cut(s) 252
BtgI CCRYGG 3 cut(s) 131, 411, 845
BtgZI GCGATG 1 cut(s) 128
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 3 cut(s) 560, 619, 728
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 316, 570
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 128, 289
CaiI CAGNNNCTG 2 cut(s) 318, 629
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 42
ClaI ATCGAT 1 cut(s) 252
Csp6I GTAC 3 cut(s) 309, 592, 739
CviAII CATG 6 cut(s) 259, 412, 439, 470, 482, 795
CviQI GTAC 3 cut(s) 309, 592, 739
DdeI CTNAG 3 cut(s) 166, 348, 609
DpnI GATC 7 cut(s) 68, 153, 251, 268, 380, 443, 558
DpnII GATC 7 cut(s) 66, 151, 249, 266, 378, 441, 556
DrdI GACNNNNNNGTC 1 cut(s) 406
DseDI GACNNNNNNGTC 1 cut(s) 406
EaeI YGGCCR 2 cut(s) 203, 874
EagI CGGCCG 1 cut(s) 203
EciI GGCGGA 1 cut(s) 262
EclXI CGGCCG 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 411
Eco32I GATATC 1 cut(s) 457
Eco52I CGGCCG 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 824
Eco81I CCTNAGG 1 cut(s) 609
Eco88I CYCGRG 4 cut(s) 179, 197, 365, 734
EcoRII CCWGG 4 cut(s) 54, 75, 90, 311
EcoRV GATATC 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 6 cut(s) 262, 415, 442, 473, 485, 798
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FatI CATG 6 cut(s) 258, 411, 438, 469, 481, 794
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 8 cut(s) 137, 185, 203, 245, 388, 433, 630, 633
FokI GGATG 3 cut(s) 547, 626, 735
Fsp4HI GCNGC 8 cut(s) 137, 185, 203, 245, 388, 433, 630, 633
FspBI CTAG 2 cut(s) 771, 925
GlaI GCGC 1 cut(s) 286
GluI GCNGC 8 cut(s) 137, 185, 203, 245, 388, 433, 630, 633
GsuI CTGGAG 2 cut(s) 113, 594
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 3 cut(s) 44, 205, 876
HapII CCGG 4 cut(s) 233, 288, 445, 775
HhaI GCGC 1 cut(s) 287
Hin1II CATG 6 cut(s) 262, 415, 442, 473, 485, 798
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 9 cut(s) 212, 229, 254, 304, 404, 427, 485, 900, 921
HpaII CCGG 4 cut(s) 233, 288, 445, 775
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 4 cut(s) 51, 228, 705, 763
Hpy188III TCNNGA 8 cut(s) 233, 382, 482, 529, 584, 611, 734, 904
Hpy8I GTNNAC 4 cut(s) 51, 228, 705, 763
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 181, 808
HpyCH4III ACNGT 2 cut(s) 28, 849
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 5 cut(s) 126, 139, 147, 635, 798
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 422, 541
HpyF3I CTNAG 3 cut(s) 166, 348, 609
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 6 cut(s) 262, 415, 442, 473, 485, 798
HspAI GCGC 1 cut(s) 285
Kpn2I TCCGGA 1 cut(s) 232
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 7 cut(s) 66, 151, 249, 266, 378, 441, 556
LmnI GCTCC 5 cut(s) 94, 267, 282, 326, 661
Lsp1109I GCAGC 5 cut(s) 123, 374, 419, 616, 619
LweI GCATC 1 cut(s) 105
MaeI CTAG 2 cut(s) 771, 925
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 28, 397
MalI GATC 7 cut(s) 68, 153, 251, 268, 380, 443, 558
MbiI CCGCTC 2 cut(s) 202, 244
MboI GATC 7 cut(s) 66, 151, 249, 266, 378, 441, 556
MboII GAAGA 3 cut(s) 32, 817, 847
MfeI CAATTG 1 cut(s) 636
MflI RGATCY 2 cut(s) 151, 556
MhlI GDGCHC 3 cut(s) 99, 359, 666
MlsI TGGCCA 1 cut(s) 876
MluCI AATT 4 cut(s) 619, 636, 655, 808
MluNI TGGCCA 1 cut(s) 876
MlyI GAGTC 2 cut(s) 223, 494
MmeI TCCRAC 1 cut(s) 348
Mox20I TGGCCA 1 cut(s) 876
MroI TCCGGA 1 cut(s) 232
MroNI GCCGGC 1 cut(s) 287
MscI TGGCCA 1 cut(s) 876
MseI TTAA 2 cut(s) 596, 822
Msp20I TGGCCA 1 cut(s) 876
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 4 cut(s) 233, 288, 445, 775
MspR9I CCNGG 6 cut(s) 56, 77, 92, 313, 446, 776
MunI CAATTG 1 cut(s) 636
MvaI CCWGG 4 cut(s) 56, 77, 92, 313
MwoI GCNNNNNNNGC 3 cut(s) 136, 422, 541
NaeI GCCGGC 1 cut(s) 289
NciI CCSGG 2 cut(s) 446, 776
NcoI CCATGG 1 cut(s) 411
NdeII GATC 7 cut(s) 66, 151, 249, 266, 378, 441, 556
NgoMIV GCCGGC 1 cut(s) 287
NlaIII CATG 6 cut(s) 262, 415, 442, 473, 485, 798
NlaIV GGNNCC 2 cut(s) 153, 356
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 28, 397
NspI RCATGY 1 cut(s) 798
NspV TTCGAA 1 cut(s) 210
PaeR7I CTCGAG 4 cut(s) 179, 197, 365, 734
PagI TCATGA 1 cut(s) 481
PaqCI CACCTGC 1 cut(s) 130
PdiI GCCGGC 1 cut(s) 289
PfeI GAWTC 7 cut(s) 212, 254, 304, 404, 427, 900, 921
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 8 cut(s) 138, 186, 204, 246, 389, 434, 631, 634
PleI GAGTC 2 cut(s) 223, 493
PpsI GAGTC 2 cut(s) 223, 493
Psp6I CCWGG 4 cut(s) 54, 75, 90, 311
PspGI CCWGG 4 cut(s) 54, 75, 90, 311
PspN4I GGNNCC 2 cut(s) 153, 356
PspPI GGNCC 1 cut(s) 42
PspXI VCTCGAGB 3 cut(s) 179, 197, 365
PstI CTGCAG 1 cut(s) 141
PstNI CAGNNNCTG 2 cut(s) 318, 629
PsuI RGATCY 2 cut(s) 151, 556
RsaI GTAC 3 cut(s) 310, 593, 740
RsaNI GTAC 3 cut(s) 309, 592, 739
SaqAI TTAA 2 cut(s) 596, 822
SatI GCNGC 8 cut(s) 137, 185, 203, 245, 388, 433, 630, 633
Sau3AI GATC 7 cut(s) 66, 151, 249, 266, 378, 441, 556
Sau96I GGNCC 1 cut(s) 42
ScaI AGTACT 2 cut(s) 593, 740
SchI GAGTC 2 cut(s) 223, 494
ScrFI CCNGG 6 cut(s) 56, 77, 92, 313, 446, 776
SduI GDGCHC 3 cut(s) 99, 359, 666
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 2 cut(s) 137, 717
Sfr274I CTCGAG 4 cut(s) 179, 197, 365, 734
SfuI TTCGAA 1 cut(s) 210
SlaI CTCGAG 4 cut(s) 179, 197, 365, 734
SmlI CTYRAG 4 cut(s) 179, 197, 365, 734
SmoI CTYRAG 4 cut(s) 179, 197, 365, 734
Sse9I AATT 4 cut(s) 619, 636, 655, 808
SsiI CCGC 5 cut(s) 185, 202, 244, 247, 535
SspMI CTAG 2 cut(s) 771, 925
StyD4I CCNGG 6 cut(s) 54, 75, 90, 311, 444, 774
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 28, 849
TaiI ACGT 1 cut(s) 345
TasI AATT 4 cut(s) 619, 636, 655, 808
TatI WGTACW 2 cut(s) 591, 738
TauI GCSGC 3 cut(s) 187, 205, 247
TfiI GAWTC 7 cut(s) 212, 254, 304, 404, 427, 900, 921
Tru1I TTAA 2 cut(s) 596, 822
Tru9I TTAA 2 cut(s) 596, 822
TscAI CASTG 2 cut(s) 323, 577
TseFI GTSAC 2 cut(s) 28, 397
TseI GCWGC 5 cut(s) 136, 387, 432, 629, 632
Tsp45I GTSAC 2 cut(s) 28, 397
TspDTI ATGAA 1 cut(s) 486
TspRI CASTG 2 cut(s) 323, 577
XapI RAATTY 3 cut(s) 619, 655, 808
XceI RCATGY 1 cut(s) 798
XhoI CTCGAG 4 cut(s) 179, 197, 365, 734
XspI CTAG 2 cut(s) 771, 925
ZrmI AGTACT 2 cut(s) 593, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.