Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

11138711 .. 11139058

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1151200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAGGTGCTCCAACCGAAAAAAACCCAACTCTCTTGTTTTCGCGCGACCACCGAAAATGGAAACAATCAACAACGAAGAAACAGTGACTGAGTCCGGCTCGGACTGGGCCGAGTTGACCCAGGAGTGCCTGATCAACATCCTGGGACGGCTCACCCTGGAGCACCGATGGATTGGGGCGATGCTGGTCTGCAAGTCGTGGCTGCTGGTGTGCAAGGAGCCTTGCCTCAACTCCGCCTTCGACCTCGAGCCGCCGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

87

Amino Acids

9.85

Weight (kDa)

5.78

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	44, 46
AciI	CCGC	2 cut(s)	234, 251
AjnI	CCWGG	3 cut(s)	120, 141, 156
Alw21I	GWGCWC	2 cut(s)	11, 165
AlwNI	CAGNNNCTG	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	11, 165
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	2 cut(s)	164, 238
BciT130I	CCWGG	3 cut(s)	122, 143, 158
BclI	TGATCA	1 cut(s)	132
BfaI	CTAG	1 cut(s)	259
BisI	GCNGC	2 cut(s)	203, 251
BlsI	GCNGC	2 cut(s)	204, 252
Bme1390I	CCNGG	3 cut(s)	122, 143, 158
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	3 cut(s)	122, 143, 158
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	120, 142, 156
Bse1I	ACTGG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	3 cut(s)	122, 143, 158
BseDI	CCNNGG	3 cut(s)	120, 142, 156
BseGI	GGATG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	189
Bsh1236I	CGCG	2 cut(s)	44, 46
BshFI	GGCC	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	11, 165
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	11, 165
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	2 cut(s)	234, 251
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	2 cut(s)	44, 46
BspLI	GGNNCC	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	120, 142, 156
BssMI	GATC	1 cut(s)	132
Bst2UI	CCWGG	3 cut(s)	122, 143, 158
Bst4CI	ACNGT	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	2 cut(s)	44, 46
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstNI	CCWGG	3 cut(s)	122, 143, 158
BstSCI	CCNGG	3 cut(s)	120, 141, 156
BstUI	CGCG	2 cut(s)	44, 46
BstV1I	GCAGC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	110
BtgZI	GCGATG	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	89
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	108
CviJI	RGCY	6 cut(s)	99, 110, 151, 202, 220, 250
CviKI_1	RGCY	6 cut(s)	99, 110, 151, 202, 220, 250
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	223
Eco88I	CYCGRG	1 cut(s)	245
EcoRII	CCWGG	3 cut(s)	120, 141, 156
FaqI	GGGAC	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	203, 251
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	203, 251
FspBI	CTAG	1 cut(s)	259
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	2 cut(s)	203, 251
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	1 cut(s)	96
HhaI	GCGC	1 cut(s)	46
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	192, 213
HpyF3I	CTNAG	1 cut(s)	90
HspAI	GCGC	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	3 cut(s)	14, 160, 217
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	89
MhlI	GDGCHC	2 cut(s)	11, 165
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	2 cut(s)	236, 254
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	3 cut(s)	122, 143, 158
MvaI	CCWGG	3 cut(s)	122, 143, 158
MvnI	CGCG	2 cut(s)	44, 46
NdeII	GATC	1 cut(s)	132
NlaIV	GGNNCC	1 cut(s)	219
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	245
PflFI	GACNNNGTC	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	204, 252
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	3 cut(s)	120, 141, 156
PspGI	CCWGG	3 cut(s)	120, 141, 156
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	108
PspXI	VCTCGAGB	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	89
PsyI	GACNNNGTC	1 cut(s)	91
SatI	GCNGC	2 cut(s)	203, 251
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	3 cut(s)	122, 143, 158
SduI	GDGCHC	2 cut(s)	11, 165
SetI	ASST	2 cut(s)	8, 246
SfaNI	GCATC	1 cut(s)	171
Sfr274I	CTCGAG	1 cut(s)	245
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SsiI	CCGC	2 cut(s)	234, 251
SspMI	CTAG	1 cut(s)	259
StyD4I	CCNGG	3 cut(s)	120, 141, 156
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	240, 246
TauI	GCSGC	1 cut(s)	253
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	85
TspRI	CASTG	1 cut(s)	90
Tth111I	GACNNNGTC	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	245
XspI	CTAG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.