Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

21486714 .. 21487891

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007816

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAATTCTAAATTGTTGGGAGCTTGCAATAGATCGAATTTGAAGATGACTACTTTGTTGATGCGTTTTCTGAGGTGCCCAAACCTTGAGGTTCTTTCGATCAAGTGCTGCCCGAATGTGATTGATGCATCCATCGCTGACATAGAGTTTCGGTGCACCATGATTAAGGAACTTGACATCAGCTATTGCCATGAAATATCTCCGGAGTCTCTGGTGTTGATTGGGAAGAATTGCCCTAATCTCACAATTGTTAAATGGAATGCATTGAATTTGCTAGATCCTTCTGAACACGCTGGGATTGTTCCTGAGGAGTATTTAAAAACTTGCCCTCAAGATGGAAATTCAGAAGTTGATGCAATTGGCAAATCAGAGCACAACATGTTGGTTAGGATATGGAAGTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

136

Amino Acids

15.22

Weight (kDa)

5.9

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	202
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	4 cut(s)	4, 37, 268, 340
AfiI	CCNNNNNNNGG	1 cut(s)	335
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	2 cut(s)	43, 268
AluBI	AGCT	3 cut(s)	23, 183, 405
AluI	AGCT	3 cut(s)	23, 183, 405
Alw21I	GWGCWC	2 cut(s)	158, 375
Alw26I	GTCTC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	202
ApaLI	GTGCAC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	4 cut(s)	4, 37, 268, 340
AxyI	CCTNAGG	1 cut(s)	306
BaeGI	GKGCMC	2 cut(s)	80, 158
BanI	GGYRCC	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	158, 375
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	2 cut(s)	140, 329
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	77
BmsI	GCATC	4 cut(s)	51, 115, 137, 343
BpuEI	CTTGAG	2 cut(s)	107, 315
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse21I	CCTNAGG	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	202
BseGI	GGATG	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	62, 297
BseRI	GAGGAG	1 cut(s)	323
BseSI	GKGCMC	2 cut(s)	80, 158
BseXI	GCAGC	1 cut(s)	95
BseYI	CCCAGC	1 cut(s)	293
BshNI	GGYRCC	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	158, 375
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	265
Bsp1286I	GDGCHC	3 cut(s)	80, 158, 375
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	32, 99, 277
BspCNI	CTCAG	2 cut(s)	63, 298
BspEI	TCCGGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	75
BssMI	GATC	3 cut(s)	32, 99, 277
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	71, 306
BstF5I	GGATG	1 cut(s)	128
BstKTI	GATC	3 cut(s)	35, 102, 280
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	3 cut(s)	32, 99, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	382
BstSLI	GKGCMC	2 cut(s)	80, 158
BstV1I	GCAGC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
Bsu36I	CCTNAGG	1 cut(s)	306
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	25
CviAII	CATG	3 cut(s)	160, 191, 379
CviJI	RGCY	3 cut(s)	23, 183, 405
CviKI_1	RGCY	3 cut(s)	23, 183, 405
DdeI	CTNAG	2 cut(s)	71, 306
DpnI	GATC	3 cut(s)	34, 101, 279
DpnII	GATC	3 cut(s)	32, 99, 277
DraI	TTTAAA	1 cut(s)	318
Eco81I	CCTNAGG	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	4
EcoT22I	ATGCAT	2 cut(s)	130, 265
FaeI	CATG	3 cut(s)	163, 194, 382
FaiI	YATR	5 cut(s)	143, 161, 192, 380, 394
FatI	CATG	3 cut(s)	159, 190, 378
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	109
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	1 cut(s)	109
GsaI	CCCAGC	1 cut(s)	297
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	3 cut(s)	163, 194, 382
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	4 cut(s)	72, 286, 346, 370
Hpy188III	TCNNGA	3 cut(s)	203, 305, 332
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	1 cut(s)	291
HpyCH4V	TGCA	5 cut(s)	27, 128, 156, 263, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	71, 306
Hsp92II	CATG	3 cut(s)	163, 194, 382
Kpn2I	TCCGGA	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	32, 99, 277
LmnI	GCTCC	2 cut(s)	20, 402
LpnPI	CCDG	4 cut(s)	197, 216, 279, 318
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	4 cut(s)	51, 115, 137, 343
MaeI	CTAG	1 cut(s)	275
MalI	GATC	3 cut(s)	34, 101, 279
MboI	GATC	3 cut(s)	32, 99, 277
MboII	GAAGA	2 cut(s)	55, 238
MfeI	CAATTG	2 cut(s)	246, 357
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	3 cut(s)	80, 158, 375
MluCI	AATT	8 cut(s)	4, 11, 37, 229, 246, 268, 340, 357
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	4 cut(s)	66, 82, 301, 339
Mph1103I	ATGCAT	2 cut(s)	130, 265
MroI	TCCGGA	1 cut(s)	202
MseI	TTAA	3 cut(s)	165, 252, 317
MspI	CCGG	1 cut(s)	203
MunI	CAATTG	2 cut(s)	246, 357
Mva1269I	GAATGC	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	3 cut(s)	32, 99, 277
NlaIII	CATG	3 cut(s)	163, 194, 382
NlaIV	GGNNCC	1 cut(s)	77
NsiI	ATGCAT	2 cut(s)	130, 265
NspI	RCATGY	1 cut(s)	382
PciI	ACATGT	1 cut(s)	378
PctI	GAATGC	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	110
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PscI	ACATGT	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	277
SaqAI	TTAA	3 cut(s)	165, 252, 317
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	3 cut(s)	32, 99, 277
SchI	GAGTC	1 cut(s)	215
SduI	GDGCHC	3 cut(s)	80, 158, 375
SetI	ASST	6 cut(s)	25, 77, 87, 93, 185, 407
SfaNI	GCATC	4 cut(s)	51, 115, 137, 343
SmlI	CTYRAG	2 cut(s)	86, 330
SmoI	CTYRAG	2 cut(s)	86, 330
Sse9I	AATT	8 cut(s)	4, 11, 37, 229, 246, 268, 340, 357
SspMI	CTAG	1 cut(s)	275
TaqI	TCGA	2 cut(s)	35, 98
TasI	AATT	8 cut(s)	4, 11, 37, 229, 246, 268, 340, 357
Tru1I	TTAA	3 cut(s)	165, 252, 317
Tru9I	TTAA	3 cut(s)	165, 252, 317
TseI	GCWGC	1 cut(s)	108
TspDTI	ATGAA	2 cut(s)	17, 207
VneI	GTGCAC	1 cut(s)	154
XapI	RAATTY	4 cut(s)	4, 37, 268, 340
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	1 cut(s)	275
Zsp2I	ATGCAT	2 cut(s)	130, 265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.