Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

18344526 .. 18345284

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCTCGTCTGCAAGTCATGGCTGCTCGCTTGCAAGGACCAGCATCTCAACTCCTGCTTCGTCCTCGAGCCTGCTAAGTCATTGCCGGAGTCGACTTGGTGGTGGGCACCCGAGTTCGGGAGAAAGGTCGACTCCATTCTCCGGTCTGTTGCCAAATGGAGCGAGGGGTCGCTCAGGGAGATTCGCACCCGGAACTGCTCAGATGCGTCCCTGTCTTTTGTGGCTGAAAGGTGCCCAAACCTTGAGGTCTTTTCGATCAGGTGCTCCCCCAATGCGACTGATGCATCCATGGCTGGCATAGCATTTCGGTGCCCCATGATCAAGGAACTTGACATCAGCTACTGCCGTGGAATTTCTCAGGAGTCTCTTCTGTTGATCGGGAGGAGTTGCCCTAATCTAACAATCCTTAAACGGAATGCTGTGAACTTTCTAGATTATTCTATAGAAACTGGGGTAGTTCCTTCTGAGTATTTAGATACTAATAGGCCTCAAGATAGAGATTCAGAAGCTGATGCAATTGGGAAATCCATGCCGAATCTGAAGCACCTTGAACTAAGGTGCTCCAAGGTAACTGCTAAAGGGCTTGGTTTGATATGTGCAGGGTGTCGGAAACTTGAGTACTTGGATGTGTTTGGATGTGTACACTTAACCAGTAGTCGTGAGATCGAAAATGCAACATCTGAGCTCTACAACTTGAAGGAGATTAAGCAGCCATGTTTCTACACCCCTACCCCTTATCCCTGGATATCATGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

253

Amino Acids

28.43

Weight (kDa)

7.41

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	106, 231, 309
AccI	GTMKAC	2 cut(s)	92, 129
AcsI	RAATTY	1 cut(s)	351
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	2 cut(s)	620, 642
AfiI	CCNNNNNNNGG	3 cut(s)	116, 117, 141
AgsI	TTSAA	2 cut(s)	551, 697
AjnI	CCWGG	1 cut(s)	740
AluBI	AGCT	3 cut(s)	339, 509, 685
AluI	AGCT	3 cut(s)	339, 509, 685
Alw21I	GWGCWC	3 cut(s)	266, 563, 687
Alw26I	GTCTC	1 cut(s)	369
AlwNI	CAGNNNCTG	2 cut(s)	342, 509
Ama87I	CYCGRG	2 cut(s)	65, 110
AoxI	GGCC	1 cut(s)	485
ApeKI	GCWGC	2 cut(s)	22, 709
ApoI	RAATTY	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	190
AvaI	CYCGRG	2 cut(s)	65, 110
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	3 cut(s)	109, 236, 314
BanI	GGYRCC	3 cut(s)	106, 231, 309
BanII	GRGCYC	1 cut(s)	687
Bbv12I	GWGCWC	3 cut(s)	266, 563, 687
BbvI	GCAGC	2 cut(s)	9, 721
BceAI	ACGGC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	742
BclI	TGATCA	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	441
BisI	GCNGC	2 cut(s)	23, 710
BlsI	GCNGC	2 cut(s)	24, 711
BmcAI	AGTACT	1 cut(s)	620
Bme1390I	CCNGG	2 cut(s)	190, 742
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	2 cut(s)	65, 110
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	3 cut(s)	108, 233, 311
BmrFI	CCNGG	2 cut(s)	190, 742
BmrI	ACTGGG	1 cut(s)	459
BmsI	GCATC	5 cut(s)	52, 193, 271, 293, 502
BmuI	ACTGGG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	3 cut(s)	263, 474, 635
BpuMI	CCSGG	1 cut(s)	190
BsaJI	CCNNGG	4 cut(s)	288, 346, 564, 740
BsaWI	WCCGGW	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 117, 141
Bse1I	ACTGG	2 cut(s)	454, 651
Bse3DI	GCAATG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	742
BseDI	CCNNGG	4 cut(s)	288, 346, 564, 740
BseGI	GGATG	3 cut(s)	284, 631, 641
BseLI	CCNNNNNNNGG	3 cut(s)	116, 117, 141
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	5 cut(s)	187, 213, 371, 456, 672
BseNI	ACTGG	2 cut(s)	454, 651
BseRI	GAGGAG	1 cut(s)	397
BseSI	GKGCMC	3 cut(s)	109, 236, 314
BseXI	GCAGC	2 cut(s)	9, 721
BsgI	GTGCAG	1 cut(s)	618
BshFI	GGCC	1 cut(s)	487
BshNI	GGYRCC	3 cut(s)	106, 231, 309
BsiHKAI	GWGCWC	3 cut(s)	266, 563, 687
BsiHKCI	CYCGRG	2 cut(s)	65, 110
BsiSI	CCGG	3 cut(s)	86, 142, 190
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	3 cut(s)	116, 117, 141
BsmAI	GTCTC	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	487
BsoBI	CYCGRG	2 cut(s)	65, 110
Bsp1286I	GDGCHC	6 cut(s)	109, 236, 266, 314, 563, 687
Bsp1407I	TGTACA	1 cut(s)	640
Bsp143I	GATC	4 cut(s)	255, 318, 375, 663
Bsp19I	CCATGG	1 cut(s)	288
BspANI	GGCC	1 cut(s)	487
BspCNI	CTCAG	5 cut(s)	186, 212, 370, 457, 673
BspLI	GGNNCC	3 cut(s)	108, 233, 311
BspT107I	GGYRCC	3 cut(s)	106, 231, 309
BsrDI	GCAATG	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	454, 651
BssECI	CCNNGG	4 cut(s)	288, 346, 564, 740
BssMI	GATC	4 cut(s)	255, 318, 375, 663
BssT1I	CCWWGG	2 cut(s)	288, 564
Bst2UI	CCWGG	1 cut(s)	742
Bst6I	CTCTTC	1 cut(s)	372
BstAUI	TGTACA	1 cut(s)	640
BstC8I	GCNNGC	4 cut(s)	27, 31, 72, 295
BstDEI	CTNAG	7 cut(s)	75, 173, 199, 357, 465, 554, 681
BstDSI	CCRYGG	2 cut(s)	288, 346
BstF5I	GGATG	3 cut(s)	284, 631, 641
BstKTI	GATC	4 cut(s)	258, 321, 378, 666
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	4 cut(s)	255, 318, 375, 663
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 290, 299
BstNI	CCWGG	1 cut(s)	742
BstSCI	CCNGG	2 cut(s)	188, 740
BstSFI	CTRYAG	1 cut(s)	441
BstSLI	GKGCMC	3 cut(s)	109, 236, 314
BstV1I	GCAGC	2 cut(s)	9, 721
BsuRI	GGCC	1 cut(s)	487
BtgI	CCRYGG	2 cut(s)	288, 346
BtsCI	GGATG	3 cut(s)	284, 631, 641
Cac8I	GCNNGC	4 cut(s)	27, 31, 72, 295
CaiI	CAGNNNCTG	2 cut(s)	342, 509
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	2 cut(s)	619, 641
CviAII	CATG	6 cut(s)	18, 289, 316, 529, 714, 750
CviQI	GTAC	2 cut(s)	619, 641
DdeI	CTNAG	7 cut(s)	75, 173, 199, 357, 465, 554, 681
DpnI	GATC	4 cut(s)	257, 320, 377, 665
DpnII	GATC	4 cut(s)	255, 318, 375, 663
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	685
Eco130I	CCWWGG	2 cut(s)	288, 564
Eco147I	AGGCCT	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	687
Eco32I	GATATC	1 cut(s)	747
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	560
Eco88I	CYCGRG	2 cut(s)	65, 110
EcoICRI	GAGCTC	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	740
EcoRV	GATATC	1 cut(s)	747
EcoT14I	CCWWGG	2 cut(s)	288, 564
EcoT22I	ATGCAT	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	2 cut(s)	288, 564
FaeI	CATG	6 cut(s)	21, 292, 319, 532, 717, 753
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	6 cut(s)	17, 288, 315, 528, 713, 749
FbaI	TGATCA	1 cut(s)	318
FblI	GTMKAC	2 cut(s)	92, 129
Fnu4HI	GCNGC	2 cut(s)	23, 710
FokI	GGATG	3 cut(s)	271, 638, 648
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	2 cut(s)	23, 710
FspBI	CTAG	1 cut(s)	431
GluI	GCNGC	2 cut(s)	23, 710
HaeIII	GGCC	1 cut(s)	487
HapII	CCGG	3 cut(s)	86, 142, 190
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	6 cut(s)	21, 292, 319, 532, 717, 753
HincII	GTYRAC	2 cut(s)	93, 130
HindII	GTYRAC	2 cut(s)	93, 130
HinfI	GANTC	6 cut(s)	89, 131, 181, 362, 500, 535
HpaII	CCGG	3 cut(s)	86, 142, 190
Hpy166II	GTNNAC	5 cut(s)	93, 130, 424, 641, 643
Hpy188I	TCNGA	6 cut(s)	202, 466, 505, 540, 609, 682
Hpy188III	TCNNGA	6 cut(s)	118, 359, 379, 431, 491, 659
Hpy8I	GTNNAC	5 cut(s)	93, 130, 424, 641, 643
HpyAV	CCTTC	2 cut(s)	471, 691
HpyCH4V	TGCA	6 cut(s)	12, 33, 284, 515, 599, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 290, 299
HpyF3I	CTNAG	7 cut(s)	75, 173, 199, 357, 465, 554, 681
Hsp92II	CATG	6 cut(s)	21, 292, 319, 532, 717, 753
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	4 cut(s)	255, 318, 375, 663
LmnI	GCTCC	3 cut(s)	159, 269, 566
Lsp1109I	GCAGC	2 cut(s)	9, 721
LweI	GCATC	5 cut(s)	52, 193, 271, 293, 502
MaeI	CTAG	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	4 cut(s)	257, 320, 377, 665
MboI	GATC	4 cut(s)	255, 318, 375, 663
MboII	GAAGA	1 cut(s)	359
MfeI	CAATTG	1 cut(s)	516
MhlI	GDGCHC	6 cut(s)	109, 236, 266, 314, 563, 687
MluCI	AATT	2 cut(s)	351, 516
MlyI	GAGTC	3 cut(s)	98, 125, 371
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	5 cut(s)	74, 157, 238, 375, 498
Mph1103I	ATGCAT	1 cut(s)	286
MseI	TTAA	3 cut(s)	408, 647, 705
MslI	CAYNNNNRTG	1 cut(s)	307
MspI	CCGG	3 cut(s)	86, 142, 190
MspR9I	CCNGG	2 cut(s)	190, 742
MunI	CAATTG	1 cut(s)	516
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	742
MwoI	GCNNNNNNNGC	3 cut(s)	281, 290, 299
NciI	CCSGG	1 cut(s)	190
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	4 cut(s)	255, 318, 375, 663
NlaIII	CATG	6 cut(s)	21, 292, 319, 532, 717, 753
NlaIV	GGNNCC	3 cut(s)	108, 233, 311
NsiI	ATGCAT	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	487
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	3 cut(s)	181, 500, 535
PkrI	GCNGC	2 cut(s)	24, 711
PleI	GAGTC	3 cut(s)	97, 125, 370
PpsI	GAGTC	3 cut(s)	97, 125, 370
Psp124BI	GAGCTC	1 cut(s)	687
Psp6I	CCWGG	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	740
PspN4I	GGNNCC	3 cut(s)	108, 233, 311
PspPI	GGNCC	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	65
PstNI	CAGNNNCTG	2 cut(s)	342, 509
RsaI	GTAC	2 cut(s)	620, 642
RsaNI	GTAC	2 cut(s)	619, 641
RseI	CAYNNNNRTG	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	687
SalI	GTCGAC	2 cut(s)	91, 128
SaqAI	TTAA	3 cut(s)	408, 647, 705
SatI	GCNGC	2 cut(s)	23, 710
Sau3AI	GATC	4 cut(s)	255, 318, 375, 663
Sau96I	GGNCC	1 cut(s)	37
ScaI	AGTACT	1 cut(s)	620
SchI	GAGTC	3 cut(s)	98, 125, 371
ScrFI	CCNGG	2 cut(s)	190, 742
SduI	GDGCHC	6 cut(s)	109, 236, 266, 314, 563, 687
SfaNI	GCATC	5 cut(s)	52, 193, 271, 293, 502
SfcI	CTRYAG	1 cut(s)	441
Sfr274I	CTCGAG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	4 cut(s)	65, 242, 489, 614
SmoI	CTYRAG	4 cut(s)	65, 242, 489, 614
Sse9I	AATT	2 cut(s)	351, 516
SseBI	AGGCCT	1 cut(s)	487
SspMI	CTAG	1 cut(s)	431
SstI	GAGCTC	1 cut(s)	687
StuI	AGGCCT	1 cut(s)	487
StyD4I	CCNGG	2 cut(s)	188, 740
StyI	CCWWGG	2 cut(s)	288, 564
TaqI	TCGA	5 cut(s)	66, 92, 129, 254, 666
TasI	AATT	2 cut(s)	351, 516
TatI	WGTACW	2 cut(s)	618, 640
TfiI	GAWTC	3 cut(s)	181, 500, 535
Tru1I	TTAA	3 cut(s)	408, 647, 705
Tru9I	TTAA	3 cut(s)	408, 647, 705
TseI	GCWGC	2 cut(s)	22, 709
TspGWI	ACGGA	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	351
XbaI	TCTAGA	1 cut(s)	430
XhoI	CTCGAG	1 cut(s)	65
XmiI	GTMKAC	2 cut(s)	92, 129
XspI	CTAG	1 cut(s)	431
ZrmI	AGTACT	1 cut(s)	620
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.