Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

48436389 .. 48441560

Gene Structure 5172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG261800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAGTATGGATAAATCCCCAGTAACTACTACTGTTGCTAACATGGAGATCAACATCTCACCTGAGCCCTCTACTGTTATGGTTTCAAGTGCAGCAAACTCACCTAAGCCCAATTCTTCTGCTGCTAGCATGGAGACCAATCTCTCACCTGAGCCATCCACTGTTGAAAATCCAAGTCTAGCTAGTTCAACTCCCATCACAGGTCATGGTCCCTGGATGCTTATGTCGTATAAGAACAGGAAAACCAACCCAGCTAAATCCCCTGGCAATCTTGTCTCAGCTAAGTCTGGTTCTAGATTTTCTCTTCTGCAAACTTTCGATGCTGATGGGGATGATGCCATGAATGAAAAACCACCAACATCCATTGACCATCTTCCCAAGCTGAACACCTCTTCTAAACCAAAAATTGTTAAGGTTTGGAAGAAAGTTCAGGAAAAACTAACCAATTATGTGGATGTTGGTGCTACTGTGAAGTCCACAACTATTGATGCCAACTCTACCAATACTTCTACAGTGGCTCTTCATGATATTACCAATGGCAAGGCTCATGTTAAAACTACTAAATCTGCTGCTTCTACTTCCAAACCTGTTGCTAGAAAGTCGTCTCTGATGAAGCATGATCCGGCTAGGAAGACTGCTTTTCCAAGTTTGACTACTTTAATCAATGGTGTTCAAGCTTCTCCTATTCACAATAATACTTCTGCCTTGTTTGGACATTGTCCACCTGTAATTTTGAAGAATGACAGCAACAACACATCACAGGACACAAAAACTCATCAAGGTGAAAATTCCCACAGTGGCCAGGTGAGTGATGAGGGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

29.02

Weight (kDa)

9.3

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	614
AcoI	YGGCCR	1 cut(s)	799
AcsI	RAATTY	1 cut(s)	787
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	5 cut(s)	87, 167, 189, 674, 736
AjnI	CCWGG	3 cut(s)	212, 262, 801
AluBI	AGCT	5 cut(s)	182, 254, 281, 382, 677
AluI	AGCT	5 cut(s)	182, 254, 281, 382, 677
Alw26I	GTCTC	3 cut(s)	128, 280, 609
AlwI	GGATC	1 cut(s)	614
AoxI	GGCC	1 cut(s)	799
ApeKI	GCWGC	3 cut(s)	92, 122, 569
ApoI	RAATTY	1 cut(s)	787
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	5 cut(s)	51, 93, 138, 794, 817
AsuNHI	GCTAGC	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	801
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	638
BbvI	GCAGC	3 cut(s)	104, 109, 556
BccI	CCATC	4 cut(s)	163, 203, 320, 378
BciT130I	CCWGG	3 cut(s)	214, 264, 803
BcoDI	GTCTC	3 cut(s)	128, 280, 609
BfaI	CTAG	6 cut(s)	126, 179, 183, 294, 594, 627
BfmI	CTRYAG	1 cut(s)	510
BisI	GCNGC	3 cut(s)	93, 123, 570
BlsI	GCNGC	3 cut(s)	94, 124, 571
Bme1390I	CCNGG	3 cut(s)	214, 264, 803
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	3 cut(s)	214, 264, 803
BmrI	ACTGGG	1 cut(s)	14
BmsI	GCATC	4 cut(s)	207, 310, 325, 478
BmtI	GCTAGC	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	638
Bpu10I	CCTNAGC	3 cut(s)	63, 105, 150
BsaBI	GATNNNNATC	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	212, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	53
BseBI	CCWGG	3 cut(s)	214, 264, 803
BseDI	CCNNGG	2 cut(s)	212, 262
BseGI	GGATG	5 cut(s)	155, 222, 337, 359, 460
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	3 cut(s)	54, 141, 291
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	104, 109, 556
BseYI	CCCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	801
BsiSI	CCGG	1 cut(s)	623
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	3 cut(s)	128, 280, 609
BsmBI	CGTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	801
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	48, 619
BspANI	GGCC	1 cut(s)	801
BspCNI	CTCAG	3 cut(s)	55, 142, 290
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	211
BspOI	GCTAGC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	614
BspQI	GCTCTTC	1 cut(s)	525
BspTNI	GGTCTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	212, 262
BssMI	GATC	2 cut(s)	48, 619
Bst2UI	CCWGG	3 cut(s)	214, 264, 803
Bst4CI	ACNGT	6 cut(s)	34, 76, 163, 469, 514, 797
Bst6I	CTCTTC	3 cut(s)	309, 397, 525
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	5 cut(s)	63, 105, 150, 277, 282
BstF5I	GGATG	5 cut(s)	155, 222, 337, 359, 460
BstKTI	GATC	2 cut(s)	51, 622
BstMAI	GTCTC	3 cut(s)	128, 280, 609
BstMBI	GATC	2 cut(s)	48, 619
BstNI	CCWGG	3 cut(s)	214, 264, 803
BstSCI	CCNGG	3 cut(s)	212, 262, 801
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	3 cut(s)	104, 109, 556
BstV2I	GAAGAC	1 cut(s)	638
BstXI	CCANNNNNNTGG	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	801
BtsCI	GGATG	5 cut(s)	155, 222, 337, 359, 460
BtsIMutI	CAGTG	3 cut(s)	159, 519, 802
Cac8I	GCNNGC	1 cut(s)	127
CciI	TCATGA	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	209
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviAII	CATG	7 cut(s)	43, 130, 206, 340, 524, 548, 617
DdeI	CTNAG	5 cut(s)	63, 105, 150, 277, 282
DpnI	GATC	2 cut(s)	50, 621
DpnII	GATC	2 cut(s)	48, 619
EaeI	YGGCCR	1 cut(s)	799
Eam1104I	CTCTTC	3 cut(s)	309, 397, 525
EarI	CTCTTC	3 cut(s)	309, 397, 525
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	209
EcoRII	CCWGG	3 cut(s)	212, 262, 801
EcoT38I	GRGCYC	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	609
FaeI	CATG	7 cut(s)	46, 133, 209, 343, 527, 551, 620
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	7 cut(s)	42, 129, 205, 339, 523, 547, 616
Fnu4HI	GCNGC	3 cut(s)	93, 123, 570
FokI	GGATG	5 cut(s)	142, 229, 344, 346, 467
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	3 cut(s)	93, 123, 570
FspBI	CTAG	6 cut(s)	126, 179, 183, 294, 594, 627
GluI	GCNGC	3 cut(s)	93, 123, 570
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	801
HapII	CCGG	1 cut(s)	623
Hin1II	CATG	7 cut(s)	46, 133, 209, 343, 527, 551, 620
HindIII	AAGCTT	1 cut(s)	675
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	5 cut(s)	51, 93, 138, 794, 817
Hpy166II	GTNNAC	2 cut(s)	477, 722
Hpy188I	TCNGA	1 cut(s)	609
Hpy188III	TCNNGA	3 cut(s)	294, 431, 524
Hpy8I	GTNNAC	2 cut(s)	477, 722
HpyCH4III	ACNGT	6 cut(s)	34, 76, 163, 469, 514, 797
HpyCH4V	TGCA	2 cut(s)	92, 310
HpyF3I	CTNAG	5 cut(s)	63, 105, 150, 277, 282
Hsp92II	CATG	7 cut(s)	46, 133, 209, 343, 527, 551, 620
Kzo9I	GATC	2 cut(s)	48, 619
LguI	GCTCTTC	1 cut(s)	525
Lsp1109I	GCAGC	3 cut(s)	104, 109, 556
LweI	GCATC	4 cut(s)	207, 310, 325, 478
MaeI	CTAG	6 cut(s)	126, 179, 183, 294, 594, 627
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	2 cut(s)	50, 621
MboI	GATC	2 cut(s)	48, 619
MboII	GAAGA	8 cut(s)	108, 296, 365, 384, 433, 512, 643, 748
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	801
MluCI	AATT	5 cut(s)	112, 405, 445, 729, 787
MluNI	TGGCCA	1 cut(s)	801
MnlI	CCTC	3 cut(s)	79, 400, 808
Mox20I	TGGCCA	1 cut(s)	801
MscI	TGGCCA	1 cut(s)	801
MseI	TTAA	3 cut(s)	411, 552, 659
MslI	CAYNNNNRTG	1 cut(s)	780
Msp20I	TGGCCA	1 cut(s)	801
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	3 cut(s)	214, 264, 803
MvaI	CCWGG	3 cut(s)	214, 264, 803
NdeII	GATC	2 cut(s)	48, 619
NheI	GCTAGC	1 cut(s)	125
NlaIII	CATG	7 cut(s)	46, 133, 209, 343, 527, 551, 620
NlaIV	GGNNCC	1 cut(s)	211
PagI	TCATGA	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	525
PflFI	GACNNNGTC	1 cut(s)	717
PkrI	GCNGC	3 cut(s)	94, 124, 571
Psp6I	CCWGG	3 cut(s)	212, 262, 801
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	3 cut(s)	212, 262, 801
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	209
PsyI	GACNNNGTC	1 cut(s)	717
RseI	CAYNNNNRTG	1 cut(s)	780
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	411, 552, 659
SatI	GCNGC	3 cut(s)	93, 123, 570
Sau3AI	GATC	2 cut(s)	48, 619
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	3 cut(s)	214, 264, 803
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	4 cut(s)	207, 310, 325, 478
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	780
Sse9I	AATT	5 cut(s)	112, 405, 445, 729, 787
SspMI	CTAG	6 cut(s)	126, 179, 183, 294, 594, 627
StyD4I	CCNGG	3 cut(s)	212, 262, 801
TaaI	ACNGT	6 cut(s)	34, 76, 163, 469, 514, 797
TaqI	TCGA	1 cut(s)	318
TasI	AATT	5 cut(s)	112, 405, 445, 729, 787
Tru1I	TTAA	3 cut(s)	411, 552, 659
Tru9I	TTAA	3 cut(s)	411, 552, 659
TscAI	CASTG	3 cut(s)	166, 519, 802
TseI	GCWGC	3 cut(s)	92, 122, 569
TspDTI	ATGAA	4 cut(s)	356, 360, 512, 626
TspRI	CASTG	3 cut(s)	166, 519, 802
Tth111I	GACNNNGTC	1 cut(s)	717
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	787
XbaI	TCTAGA	1 cut(s)	293
XspI	CTAG	6 cut(s)	126, 179, 183, 294, 594, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.