Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007908.1

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Forward (+)

25300 .. 26649

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007908.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggaccgaaccaataatgaagaagaagaagaagaagaaccaccagtctgcgactgggccgggttgacctacgtgtgcctcgccaacatcctcgcccggcttcccttggagcaccgatggcgtgcgatgctcctctgcaaatcatggctgctcgcctgcaaggacccgcatctcaactcgcgcttcgtcctcgagcccgagcccaagctcgagtacgggtcggctcagtggtggggccccgagttggggagaagggtcgattccattctccgatctgttgctgaatggagcgaggggtcgctcagggagattcgcacccggaactgctctaatgaatctctccatttcgtcgcccaaaggtgcccaaaccttgaggttctttcgatcaagtgctgcccgaatgtgactgatgcatccatggctgacatagcgtttcggtgcatcatgattaaggaacttgacatcagctattgccatgaaatatctcacgagtctctggtgttgattgggaagaattgccctaatctcacagttgttaaacggaatgcgttgaatttgctggatccttctgaacacgctgggattattcctgaggagtatttaaaaacttgccctcaagatggaaattcagaagctgatgcaattggcaaatctatgccgaatctcaagcaccttgaactaaggttctccaaggtgacagctaaaggccttggtttgatatctgcagggtgtctgaaacttgagtacttggatgtgtttgggtgtgtaaacttgaatagtcgtgatatcaacaatgcaacatctgagctgaagaacttgaaggagattaaaaagccaaatttctacatccctaggtcggttttccattcggagaggtatggacattggaggctgtatgatgagagatttcaaacagatattttcagaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

310

Amino Acids

35.51

Weight (kDa)

5.91

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	360
AccII	CGCG	1 cut(s)	181
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	2 cut(s)	557, 570
AcsI	RAATTY	3 cut(s)	553, 625, 838
AcuI	CTGAAG	1 cut(s)	830
AfaI	GTAC	2 cut(s)	215, 746
AfiI	CCNNNNNNNGG	5 cut(s)	244, 245, 246, 620, 856
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	5 cut(s)	553, 677, 775, 820, 911
AluBI	AGCT	5 cut(s)	208, 468, 635, 701, 808
AluI	AGCT	5 cut(s)	208, 468, 635, 701, 808
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	498
AlwI	GGATC	2 cut(s)	557, 570
AlwNI	CAGNNNCTG	1 cut(s)	635
Ama87I	CYCGRG	4 cut(s)	191, 197, 209, 239
AoxI	GGCC	3 cut(s)	57, 235, 706
ApaI	GGGCCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	148, 393
ApoI	RAATTY	3 cut(s)	553, 625, 838
AspA2I	CCTAGG	1 cut(s)	851
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	5 cut(s)	4, 57, 163, 235, 236
AsuC2I	CCSGG	3 cut(s)	61, 97, 319
AsuHPI	GGTGA	1 cut(s)	706
AvaI	CYCGRG	4 cut(s)	191, 197, 209, 239
AvaII	GGWCC	2 cut(s)	4, 163
AvrII	CCTAGG	1 cut(s)	851
AxyI	CCTNAGG	1 cut(s)	591
BaeGI	GKGCMC	2 cut(s)	239, 365
BamHI	GGATCC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	360
BanII	GRGCYC	3 cut(s)	198, 204, 239
BauI	CACGAG	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	135, 380
BccI	CCATC	2 cut(s)	111, 614
BcnI	CCSGG	3 cut(s)	61, 97, 319
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	1 cut(s)	852
BfmI	CTRYAG	1 cut(s)	723
BisI	GCNGC	2 cut(s)	149, 394
BlnI	CCTAGG	1 cut(s)	851
BlsI	GCNGC	2 cut(s)	150, 395
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	3 cut(s)	61, 97, 319
Bme18I	GGWCC	2 cut(s)	4, 163
BmeT110I	CYCGRG	4 cut(s)	191, 197, 209, 239
BmgT120I	GGNCC	5 cut(s)	4, 57, 163, 235, 236
BmiI	GGNNCC	6 cut(s)	165, 236, 237, 238, 362, 564
BmrFI	CCNGG	3 cut(s)	61, 97, 319
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	6 cut(s)	117, 178, 400, 422, 450, 628
BmuI	ACTGGG	1 cut(s)	64
Bpu10I	CCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	4 cut(s)	392, 600, 650, 761
BpuMI	CCSGG	3 cut(s)	61, 97, 319
BsaAI	YACGTR	1 cut(s)	73
BsaJI	CCNNGG	5 cut(s)	105, 417, 690, 709, 851
Bsc4I	CCNNNNNNNGG	5 cut(s)	244, 245, 246, 620, 856
Bse1I	ACTGG	2 cut(s)	44, 59
Bse21I	CCTNAGG	1 cut(s)	591
BseDI	CCNNGG	5 cut(s)	105, 417, 690, 709, 851
BseGI	GGATG	4 cut(s)	87, 413, 757, 846
BseLI	CCNNNNNNNGG	5 cut(s)	244, 245, 246, 620, 856
BseMII	CTCAG	4 cut(s)	239, 316, 582, 795
BseNI	ACTGG	2 cut(s)	44, 59
BseRI	GAGGAG	2 cut(s)	122, 608
BseSI	GKGCMC	2 cut(s)	239, 365
BseXI	GCAGC	2 cut(s)	135, 380
BseYI	CCCAGC	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	181
BshFI	GGCC	3 cut(s)	59, 237, 708
BshNI	GGYRCC	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	4 cut(s)	191, 197, 209, 239
BsiSI	CCGG	3 cut(s)	60, 97, 319
BslI	CCNNNNNNNGG	5 cut(s)	244, 245, 246, 620, 856
BsmAI	GTCTC	1 cut(s)	498
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	3 cut(s)	59, 237, 708
BsoBI	CYCGRG	4 cut(s)	191, 197, 209, 239
Bsp120I	GGGCCC	1 cut(s)	235
Bsp1286I	GDGCHC	5 cut(s)	114, 198, 204, 239, 365
Bsp143I	GATC	3 cut(s)	272, 384, 562
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	3 cut(s)	59, 237, 708
BspCNI	CTCAG	4 cut(s)	238, 315, 583, 796
BspFNI	CGCG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	6 cut(s)	165, 236, 237, 238, 362, 564
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	2 cut(s)	557, 570
BspT107I	GGYRCC	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	44, 59
BssECI	CCNNGG	5 cut(s)	105, 417, 690, 709, 851
BssMI	GATC	3 cut(s)	272, 384, 562
BssSI	CACGAG	1 cut(s)	488
BssT1I	CCWWGG	5 cut(s)	105, 417, 690, 709, 851
Bst2BI	CACGAG	1 cut(s)	488
Bst4CI	ACNGT	1 cut(s)	532
BstBAI	YACGTR	1 cut(s)	73
BstC8I	GCNNGC	3 cut(s)	123, 153, 157
BstDEI	CTNAG	5 cut(s)	225, 302, 591, 680, 804
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	4 cut(s)	87, 413, 757, 846
BstFNI	CGCG	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	3 cut(s)	275, 387, 565
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	3 cut(s)	272, 384, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 127, 419, 428
BstSCI	CCNGG	3 cut(s)	59, 95, 317
BstSFI	CTRYAG	1 cut(s)	723
BstSLI	GKGCMC	2 cut(s)	239, 365
BstUI	CGCG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	135, 380
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
Bsu36I	CCTNAGG	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	59, 237, 708
BtgI	CCRYGG	1 cut(s)	417
BtgZI	GCGATG	1 cut(s)	140
BtsCI	GGATG	4 cut(s)	87, 413, 757, 846
BtsIMutI	CAGTG	1 cut(s)	233
Cac8I	GCNNGC	3 cut(s)	123, 153, 157
CaiI	CAGNNNCTG	1 cut(s)	635
CciI	TCATGA	1 cut(s)	444
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	5 cut(s)	4, 57, 163, 235, 236
Csp6I	GTAC	2 cut(s)	214, 745
CviAII	CATG	4 cut(s)	144, 418, 445, 476
CviQI	GTAC	2 cut(s)	214, 745
DdeI	CTNAG	5 cut(s)	225, 302, 591, 680, 804
DpnI	GATC	3 cut(s)	274, 386, 564
DpnII	GATC	3 cut(s)	272, 384, 562
DraI	TTTAAA	1 cut(s)	603
Eco130I	CCWWGG	5 cut(s)	105, 417, 690, 709, 851
Eco147I	AGGCCT	1 cut(s)	708
Eco24I	GRGCYC	3 cut(s)	198, 204, 239
Eco32I	GATATC	2 cut(s)	720, 787
Eco47I	GGWCC	2 cut(s)	4, 163
Eco57I	CTGAAG	1 cut(s)	830
Eco81I	CCTNAGG	1 cut(s)	591
Eco88I	CYCGRG	4 cut(s)	191, 197, 209, 239
EcoO109I	RGGNCCY	3 cut(s)	163, 235, 236
EcoRV	GATATC	2 cut(s)	720, 787
EcoT14I	CCWWGG	5 cut(s)	105, 417, 690, 709, 851
EcoT22I	ATGCAT	1 cut(s)	415
EcoT38I	GRGCYC	3 cut(s)	198, 204, 239
ErhI	CCWWGG	5 cut(s)	105, 417, 690, 709, 851
FaeI	CATG	4 cut(s)	147, 421, 448, 479
FaiI	YATR	8 cut(s)	145, 419, 428, 446, 477, 656, 879, 897
FatI	CATG	4 cut(s)	143, 417, 444, 475
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	149, 394
FokI	GGATG	4 cut(s)	74, 400, 764, 833
FriOI	GRGCYC	3 cut(s)	198, 204, 239
Fsp4HI	GCNGC	2 cut(s)	149, 394
FspBI	CTAG	1 cut(s)	852
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	2 cut(s)	149, 394
GsaI	CCCAGC	1 cut(s)	582
HaeIII	GGCC	3 cut(s)	59, 237, 708
HapII	CCGG	3 cut(s)	60, 97, 319
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	147, 421, 448, 479
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	6 cut(s)	260, 310, 335, 491, 661, 927
HpaII	CCGG	3 cut(s)	60, 97, 319
HphI	GGTGA	1 cut(s)	706
Hpy166II	GTNNAC	2 cut(s)	66, 769
Hpy188I	TCNGA	7 cut(s)	272, 571, 631, 735, 805, 871, 926
Hpy188III	TCNNGA	5 cut(s)	445, 488, 590, 617, 782
Hpy8I	GTNNAC	2 cut(s)	66, 769
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	246, 576, 814
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	7 cut(s)	138, 159, 413, 441, 641, 725, 797
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 127, 419, 428
HpyF3I	CTNAG	5 cut(s)	225, 302, 591, 680, 804
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	4 cut(s)	147, 421, 448, 479
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	272, 384, 562
LmnI	GCTCC	3 cut(s)	109, 135, 288
Lsp1109I	GCAGC	2 cut(s)	135, 380
LweI	GCATC	6 cut(s)	117, 178, 400, 422, 450, 628
MaeI	CTAG	1 cut(s)	852
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	403, 694
MalI	GATC	3 cut(s)	274, 386, 564
MboI	GATC	3 cut(s)	272, 384, 562
MboII	GAAGA	8 cut(s)	32, 35, 38, 41, 44, 47, 523, 823
MfeI	CAATTG	1 cut(s)	642
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	5 cut(s)	114, 198, 204, 239, 365
MluCI	AATT	5 cut(s)	514, 553, 625, 642, 838
MlyI	GAGTC	1 cut(s)	500
Mph1103I	ATGCAT	1 cut(s)	415
MseI	TTAA	4 cut(s)	450, 537, 602, 828
MspI	CCGG	3 cut(s)	60, 97, 319
MspR9I	CCNGG	3 cut(s)	61, 97, 319
MunI	CAATTG	1 cut(s)	642
Mva1269I	GAATGC	1 cut(s)	550
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	4 cut(s)	118, 127, 419, 428
NciI	CCSGG	3 cut(s)	61, 97, 319
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	3 cut(s)	272, 384, 562
NlaIII	CATG	4 cut(s)	147, 421, 448, 479
NlaIV	GGNNCC	6 cut(s)	165, 236, 237, 238, 362, 564
NmuCI	GTSAC	2 cut(s)	403, 694
NsiI	ATGCAT	1 cut(s)	415
PaeR7I	CTCGAG	2 cut(s)	191, 209
PagI	TCATGA	1 cut(s)	444
PceI	AGGCCT	1 cut(s)	708
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	5 cut(s)	260, 310, 335, 661, 927
PkrI	GCNGC	2 cut(s)	150, 395
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	578
PspN4I	GGNNCC	6 cut(s)	165, 236, 237, 238, 362, 564
PspOMI	GGGCCC	1 cut(s)	235
PspPI	GGNCC	5 cut(s)	4, 57, 163, 235, 236
PspPPI	RGGWCCY	1 cut(s)	163
PspXI	VCTCGAGB	2 cut(s)	191, 209
PstI	CTGCAG	1 cut(s)	727
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	2 cut(s)	215, 746
RsaNI	GTAC	2 cut(s)	214, 745
SaqAI	TTAA	4 cut(s)	450, 537, 602, 828
SatI	GCNGC	2 cut(s)	149, 394
Sau3AI	GATC	3 cut(s)	272, 384, 562
Sau96I	GGNCC	5 cut(s)	4, 57, 163, 235, 236
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	3 cut(s)	61, 97, 319
SduI	GDGCHC	5 cut(s)	114, 198, 204, 239, 365
SfaNI	GCATC	6 cut(s)	117, 178, 400, 422, 450, 628
SfcI	CTRYAG	1 cut(s)	723
Sfr274I	CTCGAG	2 cut(s)	191, 209
SinI	GGWCC	2 cut(s)	4, 163
SlaI	CTCGAG	2 cut(s)	191, 209
SmlI	CTYRAG	6 cut(s)	191, 209, 371, 615, 665, 740
SmoI	CTYRAG	6 cut(s)	191, 209, 371, 615, 665, 740
Sse9I	AATT	5 cut(s)	514, 553, 625, 642, 838
SseBI	AGGCCT	1 cut(s)	708
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	852
StuI	AGGCCT	1 cut(s)	708
StyD4I	CCNGG	3 cut(s)	59, 95, 317
StyI	CCWWGG	5 cut(s)	105, 417, 690, 709, 851
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	4 cut(s)	192, 210, 258, 383
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	5 cut(s)	514, 553, 625, 642, 838
TatI	WGTACW	1 cut(s)	744
TfiI	GAWTC	5 cut(s)	260, 310, 335, 661, 927
Tru1I	TTAA	4 cut(s)	450, 537, 602, 828
Tru9I	TTAA	4 cut(s)	450, 537, 602, 828
TscAI	CASTG	1 cut(s)	233
TseFI	GTSAC	2 cut(s)	403, 694
TseI	GCWGC	2 cut(s)	148, 393
Tsp45I	GTSAC	2 cut(s)	403, 694
TspDTI	ATGAA	3 cut(s)	33, 348, 492
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	1 cut(s)	233
VpaK11BI	GGWCC	2 cut(s)	4, 163
XapI	RAATTY	3 cut(s)	553, 625, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51
XhoI	CTCGAG	2 cut(s)	191, 209
XmaJI	CCTAGG	1 cut(s)	851
XspI	CTAG	1 cut(s)	852
ZrmI	AGTACT	1 cut(s)	746
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.