RLG00000015694

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002120
Physical Location & Seq
Reverse (-)
716529 .. 717897
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015694

Sequence Viewer

Length: 957 bp
ATGGACCGAACCAATAATGAAGAAGAAGAAGAAGAAGAAGCACCACCAGTGACCGACGAGTCCGACTCCGACTCCGACTGGGCCGGGTTGACCTACGAGTGCCTCGCCAACATCCTCGGCCGGCTCCCCTTGGAGCACCGATGGCGTGCGATGCTCCTCTGCAAATCATGGCTGCTCGCCTGCAAGGACCCGCATCTCAACTCCCGCTTCATCCTCGAGCCCAAGCCCGAGCCCGAGTACGGGTCGGCTCAGTGGTGGGCCCCCGAGTTGGGGAGAAGGGTCGATTTCATTCTCCGATCTGTTGCTGAATGGAGCGAGGGATCGCTTAGGGAGATTCGCACCCGGAACTGCTCTAATGAGTCTCTCCATTTCGTCGCCCAAAGGTGCCCAAACCTTGAGGTTCTTTCGATCAAGTGCTGCCCGAATGTGACTGATGCATCCATGGCTGACATAGCGTTTCGGTGCACCATGATTAAGGAACTTGACATCAGCTATTGCCATGAAATATCTCACGAGTCTCTGGTGTTGATTGGGAAGAATTGCCCTAATCTCACAATTGTTAAACGGAATGCGTTGAATTTGCTAGATCCTTCTGAACACGCTGGGATTGTTCCTGAGGAGTATTTAAAAACTTGCCCTCAAGATGGAAATTCAGAAGCTGATGCAATTGGCAAATCTATGCCGAATCTCAAGCACCTTGAACTAAGGTTCTCCAAGGTAACGGCTAAAGGCCTTGGTTTGATATCTGCAGGGTGTCTGAAACTTGAGTACCTGGATGTGTTTGGGTGTGTAAACTTGAATAGTCGTGATATCAACAATGCAACATCCGAGCTGAAGAACTTGAAGGAGATTAAAAAGCCAAATTTCTACATCCCTAGGTCGGTTTTCCATACGGAGAGGTATGGACATTGGAGGCTGTATGATGAGAGATTTCAAACAGATATTTTCAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

319

Amino Acids

36.4

Weight (kDa)

5.41

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 67 4.4e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 384
AciI CCGC 2 cut(s) 191, 205
AclWI GGATC 2 cut(s) 328, 581
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 3 cut(s) 577, 649, 862
AcuI CTGAAG 1 cut(s) 854
AfaI GTAC 2 cut(s) 239, 770
AfiI CCNNNNNNNGG 7 cut(s) 239, 240, 268, 269, 270, 644, 880
AgsI TTSAA 5 cut(s) 577, 701, 799, 844, 935
AjnI CCWGG 1 cut(s) 771
AluBI AGCT 3 cut(s) 492, 659, 832
AluI AGCT 3 cut(s) 492, 659, 832
Alw21I GWGCWC 2 cut(s) 138, 467
Alw26I GTCTC 2 cut(s) 366, 522
Alw44I GTGCAC 1 cut(s) 463
AlwI GGATC 2 cut(s) 328, 581
AlwNI CAGNNNCTG 1 cut(s) 659
Ama87I CYCGRG 4 cut(s) 215, 227, 233, 263
AoxI GGCC 4 cut(s) 81, 118, 258, 730
ApaI GGGCCC 1 cut(s) 262
ApaLI GTGCAC 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 172, 417
ApoI RAATTY 3 cut(s) 577, 649, 862
AspA2I CCTAGG 1 cut(s) 875
AspS9I GGNCC 5 cut(s) 4, 81, 187, 258, 259
AsuC2I CCSGG 2 cut(s) 85, 343
AvaI CYCGRG 4 cut(s) 215, 227, 233, 263
AvaII GGWCC 2 cut(s) 4, 187
AvrII CCTAGG 1 cut(s) 875
AxyI CCTNAGG 1 cut(s) 615
BaeGI GKGCMC 3 cut(s) 262, 389, 467
BaeI ACNNNNGTAYC 2 cut(s) 752, 785
BanI GGYRCC 1 cut(s) 384
BanII GRGCYC 3 cut(s) 222, 234, 262
BauI CACGAG 1 cut(s) 512
Bbv12I GWGCWC 2 cut(s) 138, 467
BbvI GCAGC 2 cut(s) 159, 404
BccI CCATC 2 cut(s) 135, 638
BceAI ACGGC 1 cut(s) 738
BciT130I CCWGG 1 cut(s) 773
BcnI CCSGG 2 cut(s) 85, 343
BcoDI GTCTC 2 cut(s) 366, 522
BfaI CTAG 2 cut(s) 584, 876
BfmI CTRYAG 1 cut(s) 747
BisI GCNGC 2 cut(s) 173, 418
BlnI CCTAGG 1 cut(s) 875
BlsI GCNGC 2 cut(s) 174, 419
Bme1390I CCNGG 3 cut(s) 85, 343, 773
Bme18I GGWCC 2 cut(s) 4, 187
BmeT110I CYCGRG 4 cut(s) 215, 227, 233, 263
BmgT120I GGNCC 5 cut(s) 4, 81, 187, 258, 259
BmiI GGNNCC 5 cut(s) 125, 189, 260, 261, 386
BmrFI CCNGG 3 cut(s) 85, 343, 773
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 5 cut(s) 141, 202, 424, 446, 652
BmuI ACTGGG 1 cut(s) 88
BplI GAGNNNNNCTC 2 cut(s) 50, 82
Bpu10I CCTNAGC 1 cut(s) 326
BpuEI CTTGAG 4 cut(s) 416, 624, 674, 785
BpuMI CCSGG 2 cut(s) 85, 343
BsaJI CCNNGG 6 cut(s) 115, 129, 441, 714, 733, 875
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 7 cut(s) 239, 240, 268, 269, 270, 644, 880
Bse118I RCCGGY 1 cut(s) 120
Bse1I ACTGG 2 cut(s) 47, 83
Bse21I CCTNAGG 1 cut(s) 615
BseBI CCWGG 1 cut(s) 773
BseDI CCNNGG 6 cut(s) 115, 129, 441, 714, 733, 875
BseGI GGATG 6 cut(s) 111, 210, 437, 781, 824, 870
BseLI CCNNNNNNNGG 7 cut(s) 239, 240, 268, 269, 270, 644, 880
BseMII CTCAG 2 cut(s) 263, 606
BseNI ACTGG 2 cut(s) 47, 83
BseRI GAGGAG 2 cut(s) 146, 632
BseSI GKGCMC 3 cut(s) 262, 389, 467
BseX3I CGGCCG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 159, 404
BseYI CCCAGC 1 cut(s) 602
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 4 cut(s) 83, 120, 260, 732
BshNI GGYRCC 1 cut(s) 384
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 138, 467
BsiHKCI CYCGRG 4 cut(s) 215, 227, 233, 263
BsiSI CCGG 3 cut(s) 84, 121, 343
BslI CCNNNNNNNGG 7 cut(s) 239, 240, 268, 269, 270, 644, 880
BsmAI GTCTC 2 cut(s) 366, 522
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 4 cut(s) 83, 120, 260, 732
BsoBI CYCGRG 4 cut(s) 215, 227, 233, 263
Bsp120I GGGCCC 1 cut(s) 258
Bsp1286I GDGCHC 6 cut(s) 138, 222, 234, 262, 389, 467
Bsp143I GATC 4 cut(s) 296, 320, 408, 586
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 2 cut(s) 191, 205
BspANI GGCC 4 cut(s) 83, 120, 260, 732
BspCNI CTCAG 2 cut(s) 262, 607
BspLI GGNNCC 5 cut(s) 125, 189, 260, 261, 386
BspMAI CTGCAG 1 cut(s) 751
BspPI GGATC 2 cut(s) 328, 581
BspT107I GGYRCC 1 cut(s) 384
BsrFI RCCGGY 1 cut(s) 120
BsrI ACTGG 2 cut(s) 47, 83
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 6 cut(s) 115, 129, 441, 714, 733, 875
BssMI GATC 4 cut(s) 296, 320, 408, 586
BssSI CACGAG 1 cut(s) 512
BssT1I CCWWGG 5 cut(s) 129, 441, 714, 733, 875
Bst2BI CACGAG 1 cut(s) 512
Bst2UI CCWGG 1 cut(s) 773
BstC8I GCNNGC 4 cut(s) 122, 147, 177, 181
BstDEI CTNAG 4 cut(s) 249, 326, 615, 704
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 6 cut(s) 111, 210, 437, 781, 824, 870
BstKTI GATC 4 cut(s) 299, 323, 411, 589
BstMAI GTCTC 2 cut(s) 366, 522
BstMBI GATC 4 cut(s) 296, 320, 408, 586
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 4 cut(s) 142, 151, 443, 452
BstNI CCWGG 1 cut(s) 773
BstSCI CCNGG 3 cut(s) 83, 341, 771
BstSFI CTRYAG 1 cut(s) 747
BstSLI GKGCMC 3 cut(s) 262, 389, 467
BstV1I GCAGC 2 cut(s) 159, 404
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BstZI CGGCCG 1 cut(s) 118
Bsu36I CCTNAGG 1 cut(s) 615
BsuRI GGCC 4 cut(s) 83, 120, 260, 732
BtgI CCRYGG 1 cut(s) 441
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 6 cut(s) 111, 210, 437, 781, 824, 870
BtsIMutI CAGTG 2 cut(s) 54, 257
Cac8I GCNNGC 4 cut(s) 122, 147, 177, 181
CaiI CAGNNNCTG 1 cut(s) 659
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 5 cut(s) 4, 81, 187, 258, 259
Csp6I GTAC 2 cut(s) 238, 769
CviAII CATG 4 cut(s) 168, 442, 469, 500
CviQI GTAC 2 cut(s) 238, 769
DdeI CTNAG 4 cut(s) 249, 326, 615, 704
DpnI GATC 4 cut(s) 298, 322, 410, 588
DpnII GATC 4 cut(s) 296, 320, 408, 586
DraI TTTAAA 1 cut(s) 627
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 118
EagI CGGCCG 1 cut(s) 118
EclXI CGGCCG 1 cut(s) 118
Eco130I CCWWGG 5 cut(s) 129, 441, 714, 733, 875
Eco147I AGGCCT 1 cut(s) 732
Eco24I GRGCYC 3 cut(s) 222, 234, 262
Eco32I GATATC 2 cut(s) 744, 811
Eco47I GGWCC 2 cut(s) 4, 187
Eco52I CGGCCG 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 854
Eco81I CCTNAGG 1 cut(s) 615
Eco88I CYCGRG 4 cut(s) 215, 227, 233, 263
EcoO109I RGGNCCY 2 cut(s) 187, 259
EcoRII CCWGG 1 cut(s) 771
EcoRV GATATC 2 cut(s) 744, 811
EcoT14I CCWWGG 5 cut(s) 129, 441, 714, 733, 875
EcoT22I ATGCAT 1 cut(s) 439
EcoT38I GRGCYC 3 cut(s) 222, 234, 262
ErhI CCWWGG 5 cut(s) 129, 441, 714, 733, 875
FaeI CATG 4 cut(s) 171, 445, 472, 503
FaiI YATR 9 cut(s) 169, 443, 452, 470, 501, 680, 891, 903, 921
FatI CATG 4 cut(s) 167, 441, 468, 499
FauI CCCGC 2 cut(s) 198, 212
Fnu4HI GCNGC 2 cut(s) 173, 418
FokI GGATG 6 cut(s) 98, 197, 424, 788, 811, 857
FriOI GRGCYC 3 cut(s) 222, 234, 262
Fsp4HI GCNGC 2 cut(s) 173, 418
FspBI CTAG 2 cut(s) 584, 876
GluI GCNGC 2 cut(s) 173, 418
GsaI CCCAGC 1 cut(s) 606
HaeIII GGCC 4 cut(s) 83, 120, 260, 732
HapII CCGG 3 cut(s) 84, 121, 343
Hin1II CATG 4 cut(s) 171, 445, 472, 503
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 8 cut(s) 59, 65, 71, 334, 359, 515, 685, 951
HpaII CCGG 3 cut(s) 84, 121, 343
Hpy166II GTNNAC 3 cut(s) 90, 465, 793
Hpy188I TCNGA 9 cut(s) 64, 70, 76, 296, 595, 655, 759, 829, 950
Hpy188III TCNNGA 4 cut(s) 512, 614, 641, 806
Hpy8I GTNNAC 3 cut(s) 90, 465, 793
Hpy99I CGWCG 2 cut(s) 59, 377
HpyAV CCTTC 3 cut(s) 270, 600, 838
HpyCH4V TGCA 7 cut(s) 162, 183, 437, 465, 665, 749, 821
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 151, 443, 452
HpyF3I CTNAG 4 cut(s) 249, 326, 615, 704
Hsp92II CATG 4 cut(s) 171, 445, 472, 503
KroI GCCGGC 1 cut(s) 120
KroNI GCCGGC 1 cut(s) 122
Kzo9I GATC 4 cut(s) 296, 320, 408, 586
LmnI GCTCC 4 cut(s) 129, 133, 159, 312
Lsp1109I GCAGC 2 cut(s) 159, 404
LweI GCATC 5 cut(s) 141, 202, 424, 446, 652
MaeI CTAG 2 cut(s) 584, 876
MaeIII GTNAC 3 cut(s) 49, 427, 718
MalI GATC 4 cut(s) 298, 322, 410, 588
MboI GATC 4 cut(s) 296, 320, 408, 586
MboII GAAGA 8 cut(s) 32, 35, 38, 41, 44, 47, 547, 847
MfeI CAATTG 2 cut(s) 555, 666
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 6 cut(s) 138, 222, 234, 262, 389, 467
MluCI AATT 6 cut(s) 538, 555, 577, 649, 666, 862
MlyI GAGTC 5 cut(s) 59, 65, 68, 368, 524
MmeI TCCRAC 3 cut(s) 87, 93, 99
Mph1103I ATGCAT 1 cut(s) 439
MroNI GCCGGC 1 cut(s) 120
MseI TTAA 4 cut(s) 474, 561, 626, 852
MspI CCGG 3 cut(s) 84, 121, 343
MspR9I CCNGG 3 cut(s) 85, 343, 773
MunI CAATTG 2 cut(s) 555, 666
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 1 cut(s) 773
MwoI GCNNNNNNNGC 4 cut(s) 142, 151, 443, 452
NaeI GCCGGC 1 cut(s) 122
NciI CCSGG 2 cut(s) 85, 343
NcoI CCATGG 1 cut(s) 441
NdeII GATC 4 cut(s) 296, 320, 408, 586
NgoMIV GCCGGC 1 cut(s) 120
NlaIII CATG 4 cut(s) 171, 445, 472, 503
NlaIV GGNNCC 5 cut(s) 125, 189, 260, 261, 386
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 2 cut(s) 49, 427
NsiI ATGCAT 1 cut(s) 439
PaeR7I CTCGAG 1 cut(s) 215
PceI AGGCCT 1 cut(s) 732
PctI GAATGC 1 cut(s) 574
PdiI GCCGGC 1 cut(s) 122
PfeI GAWTC 3 cut(s) 334, 685, 951
PkrI GCNGC 2 cut(s) 174, 419
PleI GAGTC 5 cut(s) 59, 65, 67, 367, 523
PpsI GAGTC 5 cut(s) 59, 65, 67, 367, 523
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 771
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 771
PspN4I GGNNCC 5 cut(s) 125, 189, 260, 261, 386
PspOMI GGGCCC 1 cut(s) 258
PspPI GGNCC 5 cut(s) 4, 81, 187, 258, 259
PspPPI RGGWCCY 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 215
PstI CTGCAG 1 cut(s) 751
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 2 cut(s) 239, 770
RsaNI GTAC 2 cut(s) 238, 769
SaqAI TTAA 4 cut(s) 474, 561, 626, 852
SatI GCNGC 2 cut(s) 173, 418
Sau3AI GATC 4 cut(s) 296, 320, 408, 586
Sau96I GGNCC 5 cut(s) 4, 81, 187, 258, 259
SchI GAGTC 5 cut(s) 59, 65, 68, 368, 524
ScrFI CCNGG 3 cut(s) 85, 343, 773
SduI GDGCHC 6 cut(s) 138, 222, 234, 262, 389, 467
SfaNI GCATC 5 cut(s) 141, 202, 424, 446, 652
SfcI CTRYAG 1 cut(s) 747
Sfr274I CTCGAG 1 cut(s) 215
SinI GGWCC 2 cut(s) 4, 187
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 5 cut(s) 215, 395, 639, 689, 764
SmoI CTYRAG 5 cut(s) 215, 395, 639, 689, 764
Sse9I AATT 6 cut(s) 538, 555, 577, 649, 666, 862
SseBI AGGCCT 1 cut(s) 732
SsiI CCGC 2 cut(s) 191, 205
SspMI CTAG 2 cut(s) 584, 876
StuI AGGCCT 1 cut(s) 732
StyD4I CCNGG 3 cut(s) 83, 341, 771
StyI CCWWGG 5 cut(s) 129, 441, 714, 733, 875
TaqI TCGA 3 cut(s) 216, 282, 407
TaqII GACCGA 2 cut(s) 21, 68
TasI AATT 6 cut(s) 538, 555, 577, 649, 666, 862
TfiI GAWTC 3 cut(s) 334, 685, 951
Tru1I TTAA 4 cut(s) 474, 561, 626, 852
Tru9I TTAA 4 cut(s) 474, 561, 626, 852
TscAI CASTG 2 cut(s) 54, 257
TseFI GTSAC 2 cut(s) 49, 427
TseI GCWGC 2 cut(s) 172, 417
Tsp45I GTSAC 2 cut(s) 49, 427
TspDTI ATGAA 4 cut(s) 33, 199, 277, 516
TspGWI ACGGA 2 cut(s) 580, 908
TspRI CASTG 2 cut(s) 54, 257
VneI GTGCAC 1 cut(s) 463
VpaK11BI GGWCC 2 cut(s) 4, 187
XapI RAATTY 3 cut(s) 577, 649, 862
XhoI CTCGAG 1 cut(s) 215
XmaJI CCTAGG 1 cut(s) 875
XspI CTAG 2 cut(s) 584, 876
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.