Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

23449694 .. 23450933

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAAGAAGACGGGTCTGATTGGGGCGGATTGGCTCCAGAGATACTCATCAACATCATTTCAAGGCTTACGATTCAGGAGCTATGGACCGGTCCGATGTTCGTCCAAAAATCGTGGCTAACTGTTTGCAGAGATCCGTATCTCTGGTCTATCTTCGATCTGGAGCCATGGTTCGATTCCTATCCCGAGTCGACTCACTTGTGGTCCCCTGAGTTCGAGCAGAAGGTAGACTTAATGCTACGATCAGTCGTTGATTGGAGCGAAGGTGGTCTCACTAAGATCCGCGTCCGCCATTGCAGCGACCACGCTCTCTCTTACGCAGCCGATAGATGCCCGAATCTACAGGTTCTTGCCATTAGAAGCAGTCCTAACGTGACAGACGCATCGATGACGAAGATAGCGTTTCGGTGCAGGAGTTTAAAGGAACTTGATATCAGTTACTGTCACGAGATATCTCACGACACTCTTGTGATGATTGGTAGAAACTGTCCTAATCTGAGGATCTTGAAACGTAATCTTATGGATTGGTCTTCTCGGCACATTGGCTCTGTTCCTACAGAATACTTAGACGCTTGTCCTCAAGACGGAGACACAGAAGCTGACGCGATTGGGAAACATATGATCAATCTAGAGCATTTGGAGATTCAGTTCTCTAGATTATCTGTCAAGGGTCTTGCTTCGATATGTGAGGGTTGTCCCAAGCTAGAGTACTTGGACTTGTTTGGGTGTGTGCATTTGTCAAGCCGTGACATTACAAGCAACGTGTCAAGGCTTAAATGGCTTAAGGAGGTAAAGAAGCCAGATGTGTATGTGCCAAGGTCAGGGGATGTGGCGCAGACGGAGAGGTATGGACATTGGAGACTCTATGACGAGAGATTTGACATACAAGCCATGAGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

300

Amino Acids

34.57

Weight (kDa)

5.6

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	191, 228
AccII	CGCG	2 cut(s)	285, 605
AciI	CCGC	3 cut(s)	27, 283, 289
AclWI	GGATC	3 cut(s)	128, 274, 509
AfaI	GTAC	1 cut(s)	710
AfiI	CCNNNNNNNGG	2 cut(s)	584, 821
AflII	CTTAAG	1 cut(s)	782
AflIII	ACRYGT	1 cut(s)	762
AgeI	ACCGGT	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	63, 508
AleI	CACNNNNGTG	1 cut(s)	467
AloI	GAACNNNNNNTCC	4 cut(s)	155, 187, 632, 664
AluBI	AGCT	3 cut(s)	82, 599, 703
AluI	AGCT	3 cut(s)	82, 599, 703
Alw26I	GTCTC	3 cut(s)	275, 582, 853
AlwI	GGATC	3 cut(s)	128, 274, 509
AlwNI	CAGNNNCTG	2 cut(s)	441, 599
Ama87I	CYCGRG	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	297, 320
ArsI	GACNNNNNNTTYG	2 cut(s)	860, 892
AsiGI	ACCGGT	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	835
AspS9I	GGNCC	3 cut(s)	87, 92, 204
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	3 cut(s)	87, 92, 204
BauI	CACGAG	1 cut(s)	446
BbsI	GAAGAC	2 cut(s)	15, 522
BbvI	GCAGC	2 cut(s)	309, 332
BceAI	ACGGC	1 cut(s)	729
BclI	TGATCA	1 cut(s)	621
BcoDI	GTCTC	3 cut(s)	275, 582, 853
BfaI	CTAG	3 cut(s)	629, 654, 704
BfmI	CTRYAG	2 cut(s)	341, 555
BfrI	CTTAAG	1 cut(s)	782
BisI	GCNGC	2 cut(s)	298, 321
BlsI	GCNGC	2 cut(s)	299, 322
BmcAI	AGTACT	1 cut(s)	710
Bme18I	GGWCC	3 cut(s)	87, 92, 204
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	3 cut(s)	87, 92, 204
BmiI	GGNNCC	3 cut(s)	36, 165, 206
BmsI	GCATC	2 cut(s)	320, 392
BoxI	GACNNNNGTC	1 cut(s)	573
BpiI	GAAGAC	2 cut(s)	15, 522
BpmI	CTGGAG	2 cut(s)	21, 182
BpuEI	CTTGAG	1 cut(s)	564
Bsa29I	ATCGAT	1 cut(s)	386
BsaBI	GATNNNNATC	3 cut(s)	47, 138, 180
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	167, 815
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	6 cut(s)	155, 185, 250, 280, 632, 662
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 821
Bse118I	RCCGGY	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	292
Bse8I	GATNNNNATC	3 cut(s)	47, 138, 180
BseCI	ATCGAT	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	167, 815
BseGI	GGATG	1 cut(s)	832
BseJI	GATNNNNATC	3 cut(s)	47, 138, 180
BseLI	CCNNNNNNNGG	2 cut(s)	584, 821
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	201, 488
BseXI	GCAGC	2 cut(s)	309, 332
BsgI	GTGCAG	1 cut(s)	430
Bsh1236I	CGCG	2 cut(s)	285, 605
BshTI	ACCGGT	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	386
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	190, 681
BslI	CCNNNNNNNGG	2 cut(s)	584, 821
BsmAI	GTCTC	3 cut(s)	275, 582, 853
BsmFI	GGGAC	2 cut(s)	190, 681
Bso31I	GGTCTC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	6 cut(s)	133, 157, 242, 279, 501, 621
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	3 cut(s)	27, 283, 289
BspCNI	CTCAG	2 cut(s)	202, 489
BspDI	ATCGAT	1 cut(s)	386
BspFNI	CGCG	2 cut(s)	285, 605
BspLI	GGNNCC	3 cut(s)	36, 165, 206
BspPI	GGATC	3 cut(s)	128, 274, 509
BspTI	CTTAAG	1 cut(s)	782
BspTNI	GGTCTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	167, 815
BssMI	GATC	6 cut(s)	133, 157, 242, 279, 501, 621
BssSI	CACGAG	1 cut(s)	446
BssT1I	CCWWGG	2 cut(s)	167, 815
Bst2BI	CACGAG	1 cut(s)	446
Bst4CI	ACNGT	3 cut(s)	124, 443, 488
BstAFI	CTTAAG	1 cut(s)	782
BstDEI	CTNAG	4 cut(s)	210, 276, 497, 565
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	832
BstFNI	CGCG	2 cut(s)	285, 605
BstHHI	GCGC	1 cut(s)	835
BstKTI	GATC	6 cut(s)	136, 160, 245, 282, 504, 624
BstMAI	GTCTC	3 cut(s)	275, 582, 853
BstMBI	GATC	6 cut(s)	133, 157, 242, 279, 501, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 778
BstPAI	GACNNNNGTC	1 cut(s)	573
BstSFI	CTRYAG	2 cut(s)	341, 555
BstUI	CGCG	2 cut(s)	285, 605
BstV1I	GCAGC	2 cut(s)	309, 332
BstV2I	GAAGAC	2 cut(s)	15, 522
BstX2I	RGATCY	3 cut(s)	133, 279, 501
BstYI	RGATCY	3 cut(s)	133, 279, 501
Bsu15I	ATCGAT	1 cut(s)	386
BsuTUI	ATCGAT	1 cut(s)	386
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	832
CaiI	CAGNNNCTG	2 cut(s)	441, 599
CfoI	GCGC	1 cut(s)	835
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	3 cut(s)	87, 92, 204
ClaI	ATCGAT	1 cut(s)	386
CpoI	CGGWCCG	1 cut(s)	92
CseI	GACGC	4 cut(s)	274, 389, 578, 611
Csp6I	GTAC	1 cut(s)	709
CspAI	ACCGGT	1 cut(s)	89
CspCI	CAANNNNNGTGG	2 cut(s)	95, 130
CspI	CGGWCCG	1 cut(s)	92
CviAII	CATG	2 cut(s)	168, 892
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	4 cut(s)	210, 276, 497, 565
DpnI	GATC	6 cut(s)	135, 159, 244, 281, 503, 623
DpnII	GATC	6 cut(s)	133, 157, 242, 279, 501, 621
DraI	TTTAAA	1 cut(s)	420
EciI	GGCGGA	2 cut(s)	42, 278
Eco130I	CCWWGG	2 cut(s)	167, 815
Eco31I	GGTCTC	1 cut(s)	275
Eco32I	GATATC	2 cut(s)	433, 453
Eco47I	GGWCC	3 cut(s)	87, 92, 204
Eco88I	CYCGRG	1 cut(s)	185
EcoRV	GATATC	2 cut(s)	433, 453
EcoT14I	CCWWGG	2 cut(s)	167, 815
ErhI	CCWWGG	2 cut(s)	167, 815
FaeI	CATG	2 cut(s)	171, 895
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	2 cut(s)	190, 681
FatI	CATG	2 cut(s)	167, 891
FauNDI	CATATG	1 cut(s)	618
FbaI	TGATCA	1 cut(s)	621
FblI	GTMKAC	2 cut(s)	191, 228
Fnu4HI	GCNGC	2 cut(s)	298, 321
FokI	GGATG	1 cut(s)	839
Fsp4HI	GCNGC	2 cut(s)	298, 321
FspBI	CTAG	3 cut(s)	629, 654, 704
GlaI	GCGC	1 cut(s)	834
GluI	GCNGC	2 cut(s)	298, 321
GsuI	CTGGAG	2 cut(s)	21, 182
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	4 cut(s)	274, 389, 578, 611
HhaI	GCGC	1 cut(s)	835
Hin1II	CATG	2 cut(s)	171, 895
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	8 cut(s)	73, 176, 188, 193, 337, 643, 861, 897
HpaII	CCGG	1 cut(s)	90
Hpy166II	GTNNAC	2 cut(s)	192, 229
Hpy188I	TCNGA	4 cut(s)	19, 96, 498, 902
Hpy8I	GTNNAC	2 cut(s)	192, 229
HpyAV	CCTTC	2 cut(s)	217, 257
HpyCH4III	ACNGT	3 cut(s)	124, 443, 488
HpyCH4IV	ACGT	3 cut(s)	372, 511, 762
HpyCH4V	TGCA	4 cut(s)	129, 297, 411, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 778
HpyF3I	CTNAG	4 cut(s)	210, 276, 497, 565
HpySE526I	ACGT	3 cut(s)	372, 511, 762
Hsp92II	CATG	2 cut(s)	171, 895
HspAI	GCGC	1 cut(s)	833
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	6 cut(s)	133, 157, 242, 279, 501, 621
LmnI	GCTCC	4 cut(s)	40, 79, 163, 258
Lsp1109I	GCAGC	2 cut(s)	309, 332
LweI	GCATC	2 cut(s)	320, 392
MaeI	CTAG	3 cut(s)	629, 654, 704
MaeII	ACGT	3 cut(s)	372, 511, 762
MaeIII	GTNAC	4 cut(s)	373, 437, 443, 746
MalI	GATC	6 cut(s)	135, 159, 244, 281, 503, 623
MboI	GATC	6 cut(s)	133, 157, 242, 279, 501, 621
MboII	GAAGA	5 cut(s)	17, 20, 145, 406, 522
MflI	RGATCY	3 cut(s)	133, 279, 501
MlyI	GAGTC	3 cut(s)	187, 197, 855
MnlI	CCTC	5 cut(s)	492, 588, 682, 781, 837
MseI	TTAA	4 cut(s)	233, 419, 774, 783
MslI	CAYNNNNRTG	1 cut(s)	467
MspCI	CTTAAG	1 cut(s)	782
MspI	CCGG	1 cut(s)	90
MvnI	CGCG	2 cut(s)	285, 605
MwoI	GCNNNNNNNGC	2 cut(s)	297, 778
NcoI	CCATGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	618
NdeII	GATC	6 cut(s)	133, 157, 242, 279, 501, 621
NlaIII	CATG	2 cut(s)	171, 895
NlaIV	GGNNCC	3 cut(s)	36, 165, 206
NmeAIII	GCCGAG	1 cut(s)	514
NmuCI	GTSAC	3 cut(s)	373, 443, 746
OliI	CACNNNNGTG	1 cut(s)	467
PcsI	WCGNNNNNNNCGW	1 cut(s)	398
PfeI	GAWTC	5 cut(s)	73, 176, 337, 643, 897
PinAI	ACCGGT	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	299, 322
PleI	GAGTC	3 cut(s)	187, 196, 855
PpsI	GAGTC	3 cut(s)	187, 196, 855
PshAI	GACNNNNGTC	1 cut(s)	573
PspN4I	GGNNCC	3 cut(s)	36, 165, 206
PspPI	GGNCC	3 cut(s)	87, 92, 204
PstNI	CAGNNNCTG	2 cut(s)	441, 599
PsuI	RGATCY	3 cut(s)	133, 279, 501
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
RseI	CAYNNNNRTG	1 cut(s)	467
Rsr2I	CGGWCCG	1 cut(s)	92
RsrII	CGGWCCG	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	190
SaqAI	TTAA	4 cut(s)	233, 419, 774, 783
SatI	GCNGC	2 cut(s)	298, 321
Sau3AI	GATC	6 cut(s)	133, 157, 242, 279, 501, 621
Sau96I	GGNCC	3 cut(s)	87, 92, 204
ScaI	AGTACT	1 cut(s)	710
SchI	GAGTC	3 cut(s)	187, 197, 855
SfaNI	GCATC	2 cut(s)	320, 392
SfcI	CTRYAG	2 cut(s)	341, 555
SinI	GGWCC	3 cut(s)	87, 92, 204
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	2 cut(s)	579, 782
SmoI	CTYRAG	2 cut(s)	579, 782
SsiI	CCGC	3 cut(s)	27, 283, 289
SspMI	CTAG	3 cut(s)	629, 654, 704
StyI	CCWWGG	2 cut(s)	167, 815
TaaI	ACNGT	3 cut(s)	124, 443, 488
TaiI	ACGT	3 cut(s)	375, 514, 765
TaqI	TCGA	6 cut(s)	156, 174, 191, 216, 386, 680
TatI	WGTACW	1 cut(s)	708
TfiI	GAWTC	5 cut(s)	73, 176, 337, 643, 897
Tru1I	TTAA	4 cut(s)	233, 419, 774, 783
Tru9I	TTAA	4 cut(s)	233, 419, 774, 783
TseFI	GTSAC	3 cut(s)	373, 443, 746
TseI	GCWGC	2 cut(s)	297, 320
Tsp45I	GTSAC	3 cut(s)	373, 443, 746
TspGWI	ACGGA	3 cut(s)	126, 600, 854
Vha464I	CTTAAG	1 cut(s)	782
VpaK11BI	GGWCC	3 cut(s)	87, 92, 204
XbaI	TCTAGA	2 cut(s)	628, 653
XmiI	GTMKAC	2 cut(s)	191, 228
XspI	CTAG	3 cut(s)	629, 654, 704
ZrmI	AGTACT	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.