Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002120

Physical Location & Seq

Genomic Coordinates Reverse (-)

9246913 .. 9250191

Gene Structure 3279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G009680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGATTCAGAATCTAAAACGATTCCTGCTTGGTACGACGATGAGCCCTTAATTGACATGACTGAAGATCTTGATGATGAGCCATGGGGAAACAAAGAAACCCAAATTATTGAAGCACATGATCATGAGGCTTTAAACGCTGTGCCAATAGAGCGGTGCCGAAACCTTGAGGTTCTTTCTATCAAGTGCTGCCCGAATGTGACTGATGCATCCATCGCTGACATAGAGTTTCGGTGCACCATGATTAAGGAACTTGACATCAACTATTACCATGAAATATCTCCGGAGTCTCTGGTGTTGATTGGGAAGAATTGCCGTAATCTCACAATTGTTAAATGGAATGCATTGAATTTGCTAGCTCCTTCTGAACACGCTGGGATTGTTCCTCAAGATGGAAATTCAGAAGTTGATGCAATTGGCAAATCAGAGCACAACATGTTGGTTAGGATATGGAAGTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

154

Amino Acids

17.52

Weight (kDa)

4.49

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30640 AT5G57900
fragaria_vesca	FvH4_1g00760 FvH4_5g27030 FvH4_5g27040
malus_domestica	MD02G1006200.v1.1 MD15G1151100.v1.1 MD15G1151200.v1.1
prunus_persica	Prupe.7G264700_v2.0.a1
pyrus_communis	pycom02g00510
rosa_chinensis	RchiOBHm_Chr2g0085481 RchiOBHm_Chr6g0300051
rosa_laevigata	RLG00000001865 RLG00000007816 RLG00000008610 RLG00000008650 RLG00000014167 RLG00000015002 RLG00000015694 RLG00000018338 RLG00000033648
rosa_multiflora	Rmu_sc0000338.1_g000005 Rmu_sc0000543.1_g000045 Rmu_sc0000689.1_g000007 Rmu_sc0007908.1_g000009
rosa_roxburghii	Rroxscaffold_2G00092530 Rroxscaffold_2G00109180 Rroxscaffold_2G00155350
rosa_rugosa	Rorug01G0460700 Rorug05G0551200
rosa_samantha	Rh1AG261800 Rh1BG259100 Rh2AG009000 Rh2BG010300 Rh2CG010800 Rh2DG011500 Rh3DG119500 Rh4AG166900 Rh4BG384000 Rh5AG445400 Rh5CG438700 Rh5DG458200
rosa_wichuraiana	Rw2G000860 Rw3G009680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	156
AccBSI	CCGCTC	1 cut(s)	154
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	349, 397
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	113, 349
AluBI	AGCT	2 cut(s)	359, 462
AluI	AGCT	2 cut(s)	359, 462
Alw21I	GWGCWC	2 cut(s)	239, 432
Alw26I	GTCTC	1 cut(s)	294
Alw44I	GTGCAC	1 cut(s)	235
Aor13HI	TCCGGA	1 cut(s)	283
ApaLI	GTGCAC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	189
ApoI	RAATTY	2 cut(s)	349, 397
AsuNHI	GCTAGC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	2 cut(s)	239, 432
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	2 cut(s)	221, 386
BceAI	ACGGC	1 cut(s)	300
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	356
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	158
BmsI	GCATC	3 cut(s)	196, 218, 400
BmtI	GCTAGC	1 cut(s)	359
BpuEI	CTTGAG	2 cut(s)	188, 372
BsaJI	CCNNGG	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
BseAI	TCCGGA	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	374
BshNI	GGYRCC	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	239, 432
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	294
BsmI	GAATGC	1 cut(s)	346
Bsp1286I	GDGCHC	3 cut(s)	48, 239, 432
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	67, 121
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	1 cut(s)	154
BspEI	TCCGGA	1 cut(s)	283
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	158
BspOI	GCTAGC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	67, 121
BssT1I	CCWWGG	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	209
BstKTI	GATC	2 cut(s)	70, 124
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	2 cut(s)	67, 121
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 151, 215
BstNSI	RCATGY	1 cut(s)	439
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	83
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	357
CciI	TCATGA	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	7 cut(s)	58, 84, 119, 125, 241, 272, 436
CviJI	RGCY	5 cut(s)	46, 82, 131, 359, 462
CviKI_1	RGCY	5 cut(s)	46, 82, 131, 359, 462
CviQI	GTAC	1 cut(s)	34
DpnI	GATC	2 cut(s)	69, 123
DpnII	GATC	2 cut(s)	67, 121
DraI	TTTAAA	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	83
EcoT22I	ATGCAT	2 cut(s)	211, 346
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	7 cut(s)	61, 87, 122, 128, 244, 275, 439
FaiI	YATR	9 cut(s)	59, 85, 120, 126, 224, 242, 273, 437, 451
FatI	CATG	7 cut(s)	57, 83, 118, 124, 240, 271, 435
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	196
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	1 cut(s)	190
GsaI	CCCAGC	1 cut(s)	378
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	7 cut(s)	61, 87, 122, 128, 244, 275, 439
HinfI	GANTC	4 cut(s)	5, 11, 22, 287
HpaII	CCGG	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	4 cut(s)	10, 367, 403, 427
Hpy188III	TCNNGA	4 cut(s)	71, 125, 284, 389
Hpy8I	GTNNAC	1 cut(s)	237
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	372
HpyCH4V	TGCA	4 cut(s)	209, 237, 344, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 151, 215
Hsp92II	CATG	7 cut(s)	61, 87, 122, 128, 244, 275, 439
Kpn2I	TCCGGA	1 cut(s)	283
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	67, 121
LmnI	GCTCC	2 cut(s)	364, 459
LpnPI	CCDG	4 cut(s)	39, 278, 297, 360
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	3 cut(s)	196, 218, 400
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	69, 123
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	2 cut(s)	67, 121
MboII	GAAGA	2 cut(s)	77, 319
MfeI	CAATTG	2 cut(s)	327, 414
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	3 cut(s)	48, 239, 432
MluCI	AATT	7 cut(s)	51, 105, 310, 327, 349, 397, 414
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	3 cut(s)	121, 163, 396
Mph1103I	ATGCAT	2 cut(s)	211, 346
MroI	TCCGGA	1 cut(s)	283
MseI	TTAA	4 cut(s)	50, 134, 246, 333
MslI	CAYNNNNRTG	1 cut(s)	123
MspI	CCGG	1 cut(s)	284
MunI	CAATTG	2 cut(s)	327, 414
Mva1269I	GAATGC	1 cut(s)	346
MwoI	GCNNNNNNNGC	3 cut(s)	137, 151, 215
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	2 cut(s)	67, 121
NheI	GCTAGC	1 cut(s)	355
NlaIII	CATG	7 cut(s)	61, 87, 122, 128, 244, 275, 439
NlaIV	GGNNCC	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	2 cut(s)	211, 346
NspI	RCATGY	1 cut(s)	439
PagI	TCATGA	1 cut(s)	124
PciI	ACATGT	1 cut(s)	435
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	3 cut(s)	5, 11, 22
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PscI	ACATGT	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	4 cut(s)	50, 134, 246, 333
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	2 cut(s)	67, 121
SchI	GAGTC	1 cut(s)	296
SduI	GDGCHC	3 cut(s)	48, 239, 432
SetI	ASST	4 cut(s)	168, 174, 361, 464
SfaNI	GCATC	3 cut(s)	196, 218, 400
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	2 cut(s)	167, 387
SmoI	CTYRAG	2 cut(s)	167, 387
Sse9I	AATT	7 cut(s)	51, 105, 310, 327, 349, 397, 414
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	83
TasI	AATT	7 cut(s)	51, 105, 310, 327, 349, 397, 414
TfiI	GAWTC	3 cut(s)	5, 11, 22
Tru1I	TTAA	4 cut(s)	50, 134, 246, 333
Tru9I	TTAA	4 cut(s)	50, 134, 246, 333
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	288
VneI	GTGCAC	1 cut(s)	235
XapI	RAATTY	2 cut(s)	349, 397
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	1 cut(s)	356
Zsp2I	ATGCAT	2 cut(s)	211, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.