Calmodulin-binding transcription activator
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 577 |
| Acc36I | ACCTGC | 1 cut(s) | 577 |
| Acc65I | GGTACC | 1 cut(s) | 1484 |
| AccB1I | GGYRCC | 1 cut(s) | 1484 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1884 |
| AccI | GTMKAC | 1 cut(s) | 2809 |
| AccIII | TCCGGA | 1 cut(s) | 2526 |
| AciI | CCGC | 8 cut(s) | 165, 781, 1262, 1361, 1516, 2169, 2252, 2657 |
| AclWI | GGATC | 8 cut(s) | 15, 1148, 1176, 1970, 1983, 2677, 2690, 2805 |
| AcoI | YGGCCR | 1 cut(s) | 1196 |
| AcsI | RAATTY | 8 cut(s) | 111, 340, 457, 670, 763, 1430, 2043, 2496 |
| AcuI | CTGAAG | 4 cut(s) | 101, 462, 1493, 1767 |
| AcvI | CACGTG | 1 cut(s) | 1091 |
| AfaI | GTAC | 4 cut(s) | 201, 1425, 1486, 2196 |
| AfeI | AGCGCT | 1 cut(s) | 1812 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 81, 170, 575, 1884, 1899, 1900, 2393 |
| AflIII | ACRYGT | 1 cut(s) | 1394 |
| AgeI | ACCGGT | 1 cut(s) | 1837 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 2522, 2923 |
| AhlI | ACTAGT | 1 cut(s) | 2075 |
| AjiI | CACGTC | 1 cut(s) | 1378 |
| AjnI | CCWGG | 3 cut(s) | 574, 1642, 2386 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 326, 358 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2158, 2190 |
| Alw21I | GWGCWC | 2 cut(s) | 402, 871 |
| Alw44I | GTGCAC | 2 cut(s) | 398, 867 |
| AlwI | GGATC | 8 cut(s) | 15, 1148, 1176, 1970, 1983, 2677, 2690, 2805 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 64, 1136, 2012, 2159 |
| Ama87I | CYCGRG | 1 cut(s) | 2567 |
| Aor13HI | TCCGGA | 1 cut(s) | 2526 |
| Aor51HI | AGCGCT | 1 cut(s) | 1812 |
| AoxI | GGCC | 3 cut(s) | 92, 1196, 1827 |
| ApaLI | GTGCAC | 2 cut(s) | 398, 867 |
| ApoI | RAATTY | 8 cut(s) | 111, 340, 457, 670, 763, 1430, 2043, 2496 |
| AsiGI | ACCGGT | 1 cut(s) | 1837 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 114 |
| Asp718I | GGTACC | 1 cut(s) | 1484 |
| AspA2I | CCTAGG | 1 cut(s) | 2678 |
| AspLEI | GCGC | 1 cut(s) | 1813 |
| AspS9I | GGNCC | 5 cut(s) | 426, 1107, 1760, 1827, 2524 |
| AsuHPI | GGTGA | 3 cut(s) | 1171, 1313, 2408 |
| AsuII | TTCGAA | 1 cut(s) | 1569 |
| AvaI | CYCGRG | 1 cut(s) | 2567 |
| AvaII | GGWCC | 4 cut(s) | 426, 1107, 1760, 2524 |
| AvrII | CCTAGG | 1 cut(s) | 2678 |
| BaeGI | GKGCMC | 2 cut(s) | 402, 871 |
| BalI | TGGCCA | 1 cut(s) | 1198 |
| BamHI | GGATCC | 2 cut(s) | 1975, 2682 |
| BanI | GGYRCC | 1 cut(s) | 1484 |
| BanII | GRGCYC | 1 cut(s) | 1154 |
| BauI | CACGAG | 1 cut(s) | 2760 |
| BbrPI | CACGTG | 1 cut(s) | 1091 |
| BbsI | GAAGAC | 4 cut(s) | 1077, 1597, 2058, 2910 |
| Bbv12I | GWGCWC | 2 cut(s) | 402, 871 |
| BccI | CCATC | 7 cut(s) | 242, 1057, 1328, 1775, 1987, 2274, 2767 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2614, 2648 |
| BciT130I | CCWGG | 3 cut(s) | 576, 1644, 2388 |
| BciVI | GTATCC | 1 cut(s) | 652 |
| BclI | TGATCA | 1 cut(s) | 691 |
| BcuI | ACTAGT | 1 cut(s) | 2075 |
| BfaI | CTAG | 4 cut(s) | 510, 1949, 2076, 2679 |
| BfmI | CTRYAG | 3 cut(s) | 1128, 1470, 2744 |
| BfoI | RGCGCY | 1 cut(s) | 1814 |
| BfuAI | ACCTGC | 1 cut(s) | 577 |
| BfuI | GTATCC | 1 cut(s) | 652 |
| BglII | AGATCT | 1 cut(s) | 14 |
| BlnI | CCTAGG | 1 cut(s) | 2678 |
| Bme1390I | CCNGG | 3 cut(s) | 576, 1644, 2388 |
| Bme18I | GGWCC | 4 cut(s) | 426, 1107, 1760, 2524 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 2522, 2923 |
| BmeT110I | CYCGRG | 1 cut(s) | 2567 |
| BmgBI | CACGTC | 1 cut(s) | 1378 |
| BmgT120I | GGNCC | 5 cut(s) | 426, 1107, 1760, 1827, 2524 |
| BmiI | GGNNCC | 5 cut(s) | 1486, 1977, 2649, 2655, 2684 |
| BmrFI | CCNGG | 3 cut(s) | 576, 1644, 2388 |
| BmrI | ACTGGG | 1 cut(s) | 1834 |
| BmuI | ACTGGG | 1 cut(s) | 1834 |
| BpiI | GAAGAC | 4 cut(s) | 1077, 1597, 2058, 2910 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1141, 1173 |
| BpmI | CTGGAG | 2 cut(s) | 253, 1968 |
| Bpu10I | CCTNAGC | 1 cut(s) | 89 |
| Bpu14I | TTCGAA | 1 cut(s) | 1569 |
| BpuEI | CTTGAG | 2 cut(s) | 266, 1168 |
| BsaAI | YACGTR | 1 cut(s) | 1091 |
| BsaBI | GATNNNNATC | 2 cut(s) | 386, 2336 |
| BsaJI | CCNNGG | 4 cut(s) | 901, 1643, 2643, 2678 |
| BsaWI | WCCGGW | 5 cut(s) | 423, 545, 1837, 2526, 2650 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 556, 586, 1616, 1646, 2158, 2188 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 81, 170, 575, 1884, 1899, 1900, 2393 |
| Bse118I | RCCGGY | 1 cut(s) | 1837 |
| Bse1I | ACTGG | 7 cut(s) | 168, 236, 365, 429, 894, 1829, 2347 |
| Bse3DI | GCAATG | 1 cut(s) | 2632 |
| Bse8I | GATNNNNATC | 2 cut(s) | 386, 2336 |
| BseAI | TCCGGA | 1 cut(s) | 2526 |
| BseBI | CCWGG | 3 cut(s) | 576, 1644, 2388 |
| BseDI | CCNNGG | 4 cut(s) | 901, 1643, 2643, 2678 |
| BseGI | GGATG | 4 cut(s) | 369, 841, 1780, 2286 |
| BseJI | GATNNNNATC | 2 cut(s) | 386, 2336 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 81, 170, 575, 1884, 1899, 1900, 2393 |
| BseMI | GCAATG | 1 cut(s) | 2632 |
| BseMII | CTCAG | 6 cut(s) | 90, 194, 734, 1155, 1311, 2151 |
| BseNI | ACTGG | 7 cut(s) | 168, 236, 365, 429, 894, 1829, 2347 |
| BseRI | GAGGAG | 4 cut(s) | 24, 27, 936, 1637 |
| BseSI | GKGCMC | 2 cut(s) | 402, 871 |
| BseYI | CCCAGC | 2 cut(s) | 1136, 1961 |
| BshFI | GGCC | 3 cut(s) | 94, 1198, 1829 |
| BshNI | GGYRCC | 1 cut(s) | 1484 |
| BshTI | ACCGGT | 1 cut(s) | 1837 |
| BsiHKAI | GWGCWC | 2 cut(s) | 402, 871 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2567 |
| BsiSI | CCGG | 5 cut(s) | 424, 546, 1838, 2527, 2651 |
| BslFI | GGGAC | 4 cut(s) | 1258, 1364, 1595, 1660 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 81, 170, 575, 1884, 1899, 1900, 2393 |
| BsmBI | CGTCTC | 3 cut(s) | 343, 2267, 2584 |
| BsmFI | GGGAC | 4 cut(s) | 1258, 1364, 1595, 1660 |
| BsnI | GGCC | 3 cut(s) | 94, 1198, 1829 |
| BsoBI | CYCGRG | 1 cut(s) | 2567 |
| Bsp119I | TTCGAA | 1 cut(s) | 1569 |
| Bsp1286I | GDGCHC | 3 cut(s) | 402, 871, 1154 |
| Bsp13I | TCCGGA | 1 cut(s) | 2526 |
| BspACI | CCGC | 8 cut(s) | 165, 781, 1262, 1361, 1516, 2169, 2252, 2657 |
| BspANI | GGCC | 3 cut(s) | 94, 1198, 1829 |
| BspCNI | CTCAG | 6 cut(s) | 91, 195, 733, 1156, 1312, 2152 |
| BspEI | TCCGGA | 1 cut(s) | 2526 |
| BspHI | TCATGA | 2 cut(s) | 271, 688 |
| BspLI | GGNNCC | 5 cut(s) | 1486, 1977, 2649, 2655, 2684 |
| BspMAI | CTGCAG | 1 cut(s) | 1132 |
| BspMI | ACCTGC | 1 cut(s) | 577 |
| BspPI | GGATC | 8 cut(s) | 15, 1148, 1176, 1970, 1983, 2677, 2690, 2805 |
| BspT104I | TTCGAA | 1 cut(s) | 1569 |
| BspT107I | GGYRCC | 1 cut(s) | 1484 |
| BsrDI | GCAATG | 1 cut(s) | 2632 |
| BsrFI | RCCGGY | 1 cut(s) | 1837 |
| BsrI | ACTGG | 7 cut(s) | 168, 236, 365, 429, 894, 1829, 2347 |
| BssAI | RCCGGY | 1 cut(s) | 1837 |
| BssECI | CCNNGG | 4 cut(s) | 901, 1643, 2643, 2678 |
| BssSI | CACGAG | 1 cut(s) | 2760 |
| BssT1I | CCWWGG | 2 cut(s) | 901, 2678 |
| Bst2BI | CACGAG | 1 cut(s) | 2760 |
| Bst2UI | CCWGG | 3 cut(s) | 576, 1644, 2388 |
| Bst6I | CTCTTC | 3 cut(s) | 816, 1743, 2450 |
| BstBAI | YACGTR | 1 cut(s) | 1091 |
| BstBI | TTCGAA | 1 cut(s) | 1569 |
| BstC8I | GCNNGC | 5 cut(s) | 502, 581, 1414, 1533, 2250 |
| BstDSI | CCRYGG | 1 cut(s) | 2643 |
| BstEII | GGTNACC | 1 cut(s) | 419 |
| BstF5I | GGATG | 4 cut(s) | 369, 841, 1780, 2286 |
| BstH2I | RGCGCY | 1 cut(s) | 1814 |
| BstHHI | GCGC | 1 cut(s) | 1813 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 510, 2018, 2249 |
| BstNI | CCWGG | 3 cut(s) | 576, 1644, 2388 |
| BstNSI | RCATGY | 3 cut(s) | 583, 1297, 1398 |
| BstPI | GGTNACC | 1 cut(s) | 419 |
| BstSCI | CCNGG | 3 cut(s) | 574, 1642, 2386 |
| BstSFI | CTRYAG | 3 cut(s) | 1128, 1470, 2744 |
| BstSLI | GKGCMC | 2 cut(s) | 402, 871 |
| BstV2I | GAAGAC | 4 cut(s) | 1077, 1597, 2058, 2910 |
| BstX2I | RGATCY | 4 cut(s) | 14, 1140, 1975, 2682 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2644 |
| BstYI | RGATCY | 4 cut(s) | 14, 1140, 1975, 2682 |
| BsuI | GTATCC | 1 cut(s) | 652 |
| BsuRI | GGCC | 3 cut(s) | 94, 1198, 1829 |
| BtgI | CCRYGG | 1 cut(s) | 2643 |
| BtgZI | GCGATG | 2 cut(s) | 2205, 2334 |
| BtrI | CACGTC | 1 cut(s) | 1378 |
| BtsCI | GGATG | 4 cut(s) | 369, 841, 1780, 2286 |
| BtsI | GCAGTG | 2 cut(s) | 913, 1423 |
| BtsIMutI | CAGTG | 7 cut(s) | 175, 486, 840, 913, 1110, 1423, 2103 |
| BveI | ACCTGC | 1 cut(s) | 577 |
| Cac8I | GCNNGC | 5 cut(s) | 502, 581, 1414, 1533, 2250 |
| CaiI | CAGNNNCTG | 4 cut(s) | 64, 1136, 2012, 2159 |
| CciI | TCATGA | 2 cut(s) | 271, 688 |
| CfoI | GCGC | 1 cut(s) | 1813 |
| Cfr10I | RCCGGY | 1 cut(s) | 1837 |
| Cfr13I | GGNCC | 5 cut(s) | 426, 1107, 1760, 1827, 2524 |
| CseI | GACGC | 2 cut(s) | 1226, 2601 |
| Csp6I | GTAC | 4 cut(s) | 200, 1424, 1485, 2195 |
| CspAI | ACCGGT | 1 cut(s) | 1837 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 65, 100, 735, 770, 2113, 2148 |
| CviQI | GTAC | 4 cut(s) | 200, 1424, 1485, 2195 |
| DraI | TTTAAA | 1 cut(s) | 2620 |
| DriI | GACNNNNNGTC | 2 cut(s) | 2522, 2923 |
| EaeI | YGGCCR | 1 cut(s) | 1196 |
| Eam1104I | CTCTTC | 3 cut(s) | 816, 1743, 2450 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 2522, 2923 |
| EarI | CTCTTC | 3 cut(s) | 816, 1743, 2450 |
| Eco130I | CCWWGG | 2 cut(s) | 901, 2678 |
| Eco147I | AGGCCT | 1 cut(s) | 94 |
| Eco24I | GRGCYC | 1 cut(s) | 1154 |
| Eco32I | GATATC | 1 cut(s) | 2338 |
| Eco47I | GGWCC | 4 cut(s) | 426, 1107, 1760, 2524 |
| Eco47III | AGCGCT | 1 cut(s) | 1812 |
| Eco57I | CTGAAG | 4 cut(s) | 101, 462, 1493, 1767 |
| Eco72I | CACGTG | 1 cut(s) | 1091 |
| Eco88I | CYCGRG | 1 cut(s) | 2567 |
| Eco91I | GGTNACC | 1 cut(s) | 419 |
| EcoO65I | GGTNACC | 1 cut(s) | 419 |
| EcoRI | GAATTC | 1 cut(s) | 670 |
| EcoRII | CCWGG | 3 cut(s) | 574, 1642, 2386 |
| EcoRV | GATATC | 1 cut(s) | 2338 |
| EcoT14I | CCWWGG | 2 cut(s) | 901, 2678 |
| EcoT22I | ATGCAT | 2 cut(s) | 387, 1295 |
| EcoT38I | GRGCYC | 1 cut(s) | 1154 |
| ErhI | CCWWGG | 2 cut(s) | 901, 2678 |
| Esp3I | CGTCTC | 3 cut(s) | 343, 2267, 2584 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1491, 1523, 1674, 1706, 2454, 2486 |
| FaqI | GGGAC | 4 cut(s) | 1258, 1364, 1595, 1660 |
| FauI | CCCGC | 1 cut(s) | 172 |
| FbaI | TGATCA | 1 cut(s) | 691 |
| FblI | GTMKAC | 1 cut(s) | 2809 |
| FokI | GGATG | 4 cut(s) | 376, 848, 1787, 2293 |
| FriOI | GRGCYC | 1 cut(s) | 1154 |
| FspBI | CTAG | 4 cut(s) | 510, 1949, 2076, 2679 |
| GlaI | GCGC | 1 cut(s) | 1812 |
| GsaI | CCCAGC | 2 cut(s) | 1140, 1965 |
| GsuI | CTGGAG | 2 cut(s) | 253, 1968 |
| HaeII | RGCGCY | 1 cut(s) | 1814 |
| HaeIII | GGCC | 3 cut(s) | 94, 1198, 1829 |
| HapII | CCGG | 5 cut(s) | 424, 546, 1838, 2527, 2651 |
| HgaI | GACGC | 2 cut(s) | 1226, 2601 |
| HhaI | GCGC | 1 cut(s) | 1813 |
| Hin6I | GCGC | 1 cut(s) | 1811 |
| HinP1I | GCGC | 1 cut(s) | 1811 |
| HincII | GTYRAC | 3 cut(s) | 717, 1858, 2893 |
| HindII | GTYRAC | 3 cut(s) | 717, 1858, 2893 |
| HpaI | GTTAAC | 1 cut(s) | 1858 |
| HpaII | CCGG | 5 cut(s) | 424, 546, 1838, 2527, 2651 |
| HphI | GGTGA | 3 cut(s) | 1171, 1313, 2408 |
| Hpy166II | GTNNAC | 9 cut(s) | 176, 400, 717, 869, 1552, 1858, 2101, 2810, 2893 |
| Hpy8I | GTNNAC | 9 cut(s) | 176, 400, 717, 869, 1552, 1858, 2101, 2810, 2893 |
| HpyAV | CCTTC | 8 cut(s) | 190, 741, 960, 1164, 1649, 1904, 2209, 2743 |
| HpyCH4IV | ACGT | 3 cut(s) | 352, 1090, 1377 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 510, 2018, 2249 |
| HpySE526I | ACGT | 3 cut(s) | 352, 1090, 1377 |
| HspAI | GCGC | 1 cut(s) | 1811 |
| Kpn2I | TCCGGA | 1 cut(s) | 2526 |
| KpnI | GGTACC | 1 cut(s) | 1488 |
| Ksp22I | TGATCA | 1 cut(s) | 691 |
| KspAI | GTTAAC | 1 cut(s) | 1858 |
| LmnI | GCTCC | 4 cut(s) | 577, 949, 1360, 2179 |
| MaeI | CTAG | 4 cut(s) | 510, 1949, 2076, 2679 |
| MaeII | ACGT | 3 cut(s) | 352, 1090, 1377 |
| MaeIII | GTNAC | 6 cut(s) | 311, 419, 1270, 1373, 1390, 1741 |
| MflI | RGATCY | 4 cut(s) | 14, 1140, 1975, 2682 |
| MhlI | GDGCHC | 3 cut(s) | 402, 871, 1154 |
| MlsI | TGGCCA | 1 cut(s) | 1198 |
| MluNI | TGGCCA | 1 cut(s) | 1198 |
| MmeI | TCCRAC | 7 cut(s) | 542, 1425, 2317, 2367, 2429, 2503, 2567 |
| Mox20I | TGGCCA | 1 cut(s) | 1198 |
| Mph1103I | ATGCAT | 2 cut(s) | 387, 1295 |
| MroI | TCCGGA | 1 cut(s) | 2526 |
| MroXI | GAANNNNTTC | 1 cut(s) | 114 |
| MscI | TGGCCA | 1 cut(s) | 1198 |
| MslI | CAYNNNNRTG | 3 cut(s) | 299, 526, 2948 |
| Msp20I | TGGCCA | 1 cut(s) | 1198 |
| MspA1I | CMGCKG | 5 cut(s) | 1136, 1370, 2012, 2171, 2305 |
| MspI | CCGG | 5 cut(s) | 424, 546, 1838, 2527, 2651 |
| MspR9I | CCNGG | 3 cut(s) | 576, 1644, 2388 |
| MssI | GTTTAAAC | 1 cut(s) | 2620 |
| MvaI | CCWGG | 3 cut(s) | 576, 1644, 2388 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 510, 2018, 2249 |
| NlaIV | GGNNCC | 5 cut(s) | 1486, 1977, 2649, 2655, 2684 |
| NmuCI | GTSAC | 2 cut(s) | 1373, 1741 |
| NsiI | ATGCAT | 2 cut(s) | 387, 1295 |
| NspI | RCATGY | 3 cut(s) | 583, 1297, 1398 |
| NspV | TTCGAA | 1 cut(s) | 1569 |
| PaeI | GCATGC | 1 cut(s) | 583 |
| PaeR7I | CTCGAG | 1 cut(s) | 2567 |
| PagI | TCATGA | 2 cut(s) | 271, 688 |
| PaqCI | CACCTGC | 1 cut(s) | 577 |
| PceI | AGGCCT | 1 cut(s) | 94 |
| PciI | ACATGT | 1 cut(s) | 1394 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2640 |
| PdmI | GAANNNNTTC | 1 cut(s) | 114 |
| PfeI | GAWTC | 5 cut(s) | 491, 626, 2219, 2383, 2487 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1884 |
| PfoI | TCCNGGA | 1 cut(s) | 2386 |
| PinAI | ACCGGT | 1 cut(s) | 1837 |
| PmaCI | CACGTG | 1 cut(s) | 1091 |
| PmeI | GTTTAAAC | 1 cut(s) | 2620 |
| PmlI | CACGTG | 1 cut(s) | 1091 |
| Ppu21I | YACGTR | 1 cut(s) | 1091 |
| PscI | ACATGT | 1 cut(s) | 1394 |
| Psp6I | CCWGG | 3 cut(s) | 574, 1642, 2386 |
| PspCI | CACGTG | 1 cut(s) | 1091 |
| PspEI | GGTNACC | 1 cut(s) | 419 |
| PspFI | CCCAGC | 2 cut(s) | 1136, 1961 |
| PspGI | CCWGG | 3 cut(s) | 574, 1642, 2386 |
| PspN4I | GGNNCC | 5 cut(s) | 1486, 1977, 2649, 2655, 2684 |
| PspPI | GGNCC | 5 cut(s) | 426, 1107, 1760, 1827, 2524 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1323, 1355 |
| PstI | CTGCAG | 1 cut(s) | 1132 |
| PstNI | CAGNNNCTG | 4 cut(s) | 64, 1136, 2012, 2159 |
| PsuI | RGATCY | 4 cut(s) | 14, 1140, 1975, 2682 |
| PvuII | CAGCTG | 4 cut(s) | 1136, 1370, 2012, 2305 |
| RsaI | GTAC | 4 cut(s) | 201, 1425, 1486, 2196 |
| RsaNI | GTAC | 4 cut(s) | 200, 1424, 1485, 2195 |
| RseI | CAYNNNNRTG | 3 cut(s) | 299, 526, 2948 |
| Sau96I | GGNCC | 5 cut(s) | 426, 1107, 1760, 1827, 2524 |
| ScrFI | CCNGG | 3 cut(s) | 576, 1644, 2388 |
| SduI | GDGCHC | 3 cut(s) | 402, 871, 1154 |
| SfcI | CTRYAG | 3 cut(s) | 1128, 1470, 2744 |
| Sfr274I | CTCGAG | 1 cut(s) | 2567 |
| SfuI | TTCGAA | 1 cut(s) | 1569 |
| SinI | GGWCC | 4 cut(s) | 426, 1107, 1760, 2524 |
| SlaI | CTCGAG | 1 cut(s) | 2567 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 299, 526, 2948 |
| SmlI | CTYRAG | 3 cut(s) | 281, 1147, 2567 |
| SmoI | CTYRAG | 3 cut(s) | 281, 1147, 2567 |
| SpeI | ACTAGT | 1 cut(s) | 2075 |
| SphI | GCATGC | 1 cut(s) | 583 |
| SseBI | AGGCCT | 1 cut(s) | 94 |
| SsiI | CCGC | 8 cut(s) | 165, 781, 1262, 1361, 1516, 2169, 2252, 2657 |
| SspI | AATATT | 2 cut(s) | 487, 990 |
| SspMI | CTAG | 4 cut(s) | 510, 1949, 2076, 2679 |
| StuI | AGGCCT | 1 cut(s) | 94 |
| StyD4I | CCNGG | 3 cut(s) | 574, 1642, 2386 |
| StyI | CCWWGG | 2 cut(s) | 901, 2678 |
| TaiI | ACGT | 3 cut(s) | 355, 1093, 1380 |
| TaqI | TCGA | 4 cut(s) | 1023, 1569, 2568, 2771 |
| TauI | GCSGC | 1 cut(s) | 2255 |
| TfiI | GAWTC | 5 cut(s) | 491, 626, 2219, 2383, 2487 |
| TscAI | CASTG | 7 cut(s) | 175, 486, 847, 913, 1117, 1423, 2103 |
| TseFI | GTSAC | 2 cut(s) | 1373, 1741 |
| Tsp45I | GTSAC | 2 cut(s) | 1373, 1741 |
| TspGWI | ACGGA | 6 cut(s) | 237, 1859, 1988, 2225, 2311, 2825 |
| TspRI | CASTG | 7 cut(s) | 175, 486, 847, 913, 1117, 1423, 2103 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1884 |
| VneI | GTGCAC | 2 cut(s) | 398, 867 |
| VpaK11BI | GGWCC | 4 cut(s) | 426, 1107, 1760, 2524 |
| XapI | RAATTY | 8 cut(s) | 111, 340, 457, 670, 763, 1430, 2043, 2496 |
| XceI | RCATGY | 3 cut(s) | 583, 1297, 1398 |
| XhoI | CTCGAG | 1 cut(s) | 2567 |
| XmaJI | CCTAGG | 1 cut(s) | 2678 |
| XmiI | GTMKAC | 1 cut(s) | 2809 |
| XmnI | GAANNNNTTC | 1 cut(s) | 114 |
| XspI | CTAG | 4 cut(s) | 510, 1949, 2076, 2679 |
| Zsp2I | ATGCAT | 2 cut(s) | 387, 1295 |