Rh2CG242900

Calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001204
Physical Location & Seq
Reverse (-)
25463144 .. 25467026
3883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG242900.1

Sequence Viewer

Length: 423 bp
ATGGCCGAATCACAGCGGCTATTAGGTGGATCACTTTTTCTTGTCGACCGGAAGAAGGTGAAACATTATAAGAGGGATGGTCATAACTGGAGGAAGAAAAAAGATGGAAAGACAGTGATGGAGGGGAATGAGAAGCTCAAGGTTGGACATGTTCATAAGTTGCGCTGCTACTATGCCCCTGGAGAAGAAAATAAAAATTTCAAGAGACGCATTTATTCGATGCTTGAAGAGGATCTCAAACACATTGTTCTCGTCCACTACCGGGAAGAAGAGCTGCTGAATAGTTCAGAAGGGACATCAGCTTGTAAGAACGATGACCTCAGAGCAGTGTGGAACTTGCTGGATAATTCAGAATGTACATCAGCTGATATGAATGAAGAACAGTTGTTAGACACTGTAGCGTCGTTCTCTGCCCTACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 CG-1 IQ TIG

Protein Analysis

140

Amino Acids

16.24

Weight (kDa)

7.74

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CG-1 PF03859 5 - 89 5.1e-32 CG-1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AccI GTMKAC 1 cut(s) 45
AciI CCGC 1 cut(s) 16
AclWI GGATC 2 cut(s) 37, 240
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 196
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 2 cut(s) 55, 262
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 2 cut(s) 202, 227
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 4 cut(s) 136, 274, 302, 365
AluI AGCT 4 cut(s) 136, 274, 302, 365
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 2 cut(s) 37, 240
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 165, 274
ApoI RAATTY 1 cut(s) 196
AspLEI GCGC 1 cut(s) 165
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 70
BbvI GCAGC 2 cut(s) 152, 261
BccI CCATC 3 cut(s) 71, 98, 112
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 199
BfmI CTRYAG 2 cut(s) 396, 419
BisI GCNGC 3 cut(s) 17, 166, 275
BlsI GCNGC 3 cut(s) 18, 167, 276
Bme1390I CCNGG 2 cut(s) 180, 263
BmrFI CCNGG 2 cut(s) 180, 263
BmsI GCATC 1 cut(s) 210
BpmI CTGGAG 2 cut(s) 109, 201
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 262
Bse1I ACTGG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 55, 262
BseMII CTCAG 1 cut(s) 334
BseNI ACTGG 1 cut(s) 92
BseXI GCAGC 2 cut(s) 152, 261
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 2 cut(s) 49, 262
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 2 cut(s) 55, 262
BsmAI GTCTC 1 cut(s) 199
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 356
Bsp143I GATC 2 cut(s) 29, 232
BspACI CCGC 1 cut(s) 16
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 333
BspPI GGATC 2 cut(s) 37, 240
BspQI GCTCTTC 1 cut(s) 264
BsrGI TGTACA 1 cut(s) 356
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 2 cut(s) 29, 232
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 4 cut(s) 115, 384, 397, 420
Bst6I CTCTTC 2 cut(s) 222, 264
BstAUI TGTACA 1 cut(s) 356
BstDEI CTNAG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 2 cut(s) 32, 235
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 2 cut(s) 29, 232
BstMCI CGRYCG 1 cut(s) 49
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 178, 261
BstSFI CTRYAG 2 cut(s) 396, 419
BstV1I GCAGC 2 cut(s) 152, 261
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 3 cut(s) 120, 333, 393
CfoI GCGC 1 cut(s) 165
CseI GACGC 2 cut(s) 216, 390
Csp6I GTAC 1 cut(s) 357
CviAII CATG 1 cut(s) 149
CviJI RGCY 6 cut(s) 5, 19, 136, 274, 302, 365
CviKI_1 RGCY 6 cut(s) 5, 19, 136, 274, 302, 365
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 1 cut(s) 320
DpnI GATC 2 cut(s) 31, 234
DpnII GATC 2 cut(s) 29, 232
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 222, 264
EarI CTCTTC 2 cut(s) 222, 264
EcoRII CCWGG 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 1 cut(s) 152
FaiI YATR 6 cut(s) 69, 84, 150, 156, 174, 371
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 148
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 17, 166, 275
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 3 cut(s) 17, 166, 275
GlaI GCGC 1 cut(s) 164
GluI GCNGC 3 cut(s) 17, 166, 275
GsuI CTGGAG 2 cut(s) 109, 201
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 49, 262
HgaI GACGC 2 cut(s) 216, 390
HhaI GCGC 1 cut(s) 165
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 8
HpaII CCGG 2 cut(s) 49, 262
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 46, 256
Hpy188I TCNGA 3 cut(s) 289, 323, 352
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 2 cut(s) 46, 256
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 2 cut(s) 49, 284
HpyCH4III ACNGT 4 cut(s) 115, 384, 397, 420
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 2 cut(s) 29, 232
LguI GCTCTTC 1 cut(s) 264
LpnPI CCDG 6 cut(s) 62, 73, 165, 192, 275, 326
Lsp1109I GCAGC 2 cut(s) 152, 261
LweI GCATC 1 cut(s) 210
MalI GATC 2 cut(s) 31, 234
MboI GATC 2 cut(s) 29, 232
MboII GAAGA 7 cut(s) 64, 106, 197, 239, 278, 281, 389
MflI RGATCY 1 cut(s) 232
MluCI AATT 2 cut(s) 196, 346
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 5 cut(s) 66, 84, 115, 223, 329
MspA1I CMGCKG 2 cut(s) 16, 365
MspI CCGG 2 cut(s) 49, 262
MspR9I CCNGG 2 cut(s) 180, 263
MvaI CCWGG 1 cut(s) 180
NciI CCSGG 1 cut(s) 263
NdeII GATC 2 cut(s) 29, 232
NlaIII CATG 1 cut(s) 152
NspI RCATGY 1 cut(s) 152
PciI ACATGT 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 3 cut(s) 18, 167, 276
PscI ACATGT 1 cut(s) 148
PsiI TTATAA 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SalI GTCGAC 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 264
SatI GCNGC 3 cut(s) 17, 166, 275
Sau3AI GATC 2 cut(s) 29, 232
ScrFI CCNGG 2 cut(s) 180, 263
SetI ASST 8 cut(s) 28, 60, 138, 144, 276, 304, 321, 367
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 2 cut(s) 396, 419
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 2 cut(s) 196, 346
SsiI CCGC 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 178, 261
TaaI ACNGT 4 cut(s) 115, 384, 397, 420
TaqI TCGA 2 cut(s) 45, 218
TasI AATT 2 cut(s) 196, 346
TatI WGTACW 1 cut(s) 356
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 1 cut(s) 8
TscAI CASTG 3 cut(s) 120, 333, 400
TseI GCWGC 2 cut(s) 165, 274
TspDTI ATGAA 3 cut(s) 143, 386, 390
TspRI CASTG 3 cut(s) 120, 333, 400
XapI RAATTY 1 cut(s) 196
XceI RCATGY 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.