Rh2AG238800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001204
Physical Location & Seq
Reverse (-)
26058121 .. 26063047
4927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG238800.1

Sequence Viewer

Length: 228 bp
ATGACTTTGAGATCCTCCCCCTATAAGAACAAGAAGGAGTTTCACGAGAGAAATCCTAGTCTATGTCCTCATCGAATACAAACCCTAACAAGAACCCAGCTTCCGGCGACGATGTCCAAGACGACTACGGCTATGGACGAAACCATTAGATCCGGTGACGATGCTCGAGCTCTAACTAACCTGATAGCTTCTCAGTCTCACCGACCTCACCTACTGCTAGCCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.46

Weight (kDa)

10.16

Isoelectric Point (pI)

60.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AclWI GGATC 2 cut(s) 6, 144
AfiI CCNNNNNNNGG 1 cut(s) 103
AloI GAACNNNNNNTCC 2 cut(s) 85, 117
AluBI AGCT 3 cut(s) 100, 170, 188
AluI AGCT 3 cut(s) 100, 170, 188
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 2 cut(s) 6, 144
Ama87I CYCGRG 1 cut(s) 165
AsuHPI GGTGA 3 cut(s) 167, 191, 200
AsuNHI GCTAGC 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 165
BanII GRGCYC 1 cut(s) 172
BauI CACGAG 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 2 cut(s) 57, 218
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 165
BmsI GCATC 1 cut(s) 151
BmtI GCTAGC 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 206
BseYI CCCAGC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 2 cut(s) 104, 153
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 11, 149
BspACI CCGC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 205
BspOI GCTAGC 1 cut(s) 221
BspPI GGATC 2 cut(s) 6, 144
BssMI GATC 2 cut(s) 11, 149
BssSI CACGAG 1 cut(s) 44
Bst2BI CACGAG 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 192
BstKTI GATC 2 cut(s) 14, 152
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 11, 149
BstX2I RGATCY 2 cut(s) 11, 149
BstYI RGATCY 2 cut(s) 11, 149
Cac8I GCNNGC 1 cut(s) 219
CviJI RGCY 5 cut(s) 100, 131, 170, 188, 221
CviKI_1 RGCY 5 cut(s) 100, 131, 170, 188, 221
DdeI CTNAG 1 cut(s) 192
DpnI GATC 2 cut(s) 13, 151
DpnII GATC 2 cut(s) 11, 149
Ecl136II GAGCTC 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 172
FaiI YATR 3 cut(s) 24, 64, 134
Fnu4HI GCNGC 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 2 cut(s) 57, 218
GluI GCNGC 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 100
HapII CCGG 2 cut(s) 104, 153
HpaII CCGG 2 cut(s) 104, 153
HphI GGTGA 3 cut(s) 167, 191, 200
Hpy188III TCNNGA 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 192
Kzo9I GATC 2 cut(s) 11, 149
LpnPI CCDG 4 cut(s) 110, 117, 166, 194
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 57, 218
MaeIII GTNAC 1 cut(s) 155
MalI GATC 2 cut(s) 13, 151
MboI GATC 2 cut(s) 11, 149
MflI RGATCY 2 cut(s) 11, 149
MhlI GDGCHC 1 cut(s) 172
MnlI CCTC 3 cut(s) 25, 78, 216
MspI CCGG 2 cut(s) 104, 153
NdeII GATC 2 cut(s) 11, 149
NheI GCTAGC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 165
PflFI GACNNNGTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 223
Psp124BI GAGCTC 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 96
PspXI VCTCGAGB 1 cut(s) 165
PsuI RGATCY 2 cut(s) 11, 149
PsyI GACNNNGTC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 172
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 2 cut(s) 11, 149
SduI GDGCHC 1 cut(s) 172
SetI ASST 6 cut(s) 102, 172, 183, 190, 208, 213
SfaNI GCATC 1 cut(s) 151
Sfr274I CTCGAG 1 cut(s) 165
SlaI CTCGAG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
SsiI CCGC 1 cut(s) 222
SspMI CTAG 2 cut(s) 57, 218
SstI GAGCTC 1 cut(s) 172
TaqI TCGA 2 cut(s) 73, 166
TauI GCSGC 1 cut(s) 224
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
Tth111I GACNNNGTC 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 165
XspI CTAG 2 cut(s) 57, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.