FvH4_5g27670

calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001204
Physical Location & Seq
Forward (+)
18870600 .. 18878874
8275 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27670.t2

Sequence Viewer

Length: 2964 bp
ATGGCTGAGATGAGAAAATACCTCCCCAATCAGCAACTAGAACTTTCCCAGATATTGCGAGAATCACAGCAGCGTTGGCTTCGACCGACTGAAATTTGTGAAATACTGCGCAACTACCAAAGGTTTCAGCTAACCCCAGATCCGCCCGTCAGGCCTCCAGCTGGTTCTTTGTTCCTCTTTGATCGTAAAGCACTTCGGTATTTTCGTAAAGATGGTCACCGCTGGAGGAAGAAAAAGGACGGAAAAACTGTCAAAGAAGCACATGAAAAGTTGAAGGCTGGTAGTGTGGACGTTCTTCACTGTTACTATGCCCATGGGGAGGACAATGAGAATTTTCAGCGGAGGAGTTATTGGATGCTTGATACTCATTTACAACACATTGTTCTTGTGCATTACAGAATGGTCGAGGGAAATAAGTCTGGTGTCTCCCGTTTGCTGGTTGATCCAGGATCACAGGTTGGAAGCCCTCAAAGTGCATCAGCACCTTGCTCTGCACAAGCAAACTCCCCTGCGCCTACAGTTCAAACATCTTTTGCTTCAAATCCAATCAAGGTTGAGTGGAATGGACAAAAATTATCTACAGAATTTGAAGATGTGGATTCTCCGGGTGATGCTGGAGCTTCCTCTGGTACCCAACCTATGCCTGGTTCTTTTCTGAATGCTTGTCTGCAGTCACCAGAAGTTGGAAGACTTTCTGAGTCATTCAGGAATCCTTCTGGAATATGGTATGCCGGACCTAAAGGTTATGAGAGTGCTGGTTCATCTGACTGGGCGATGCACAGATCAACAAGAACTGAGTGCAACCTGCATGAACAAAATCTTTTTGTTGAAGACATAAAGAAAAATCTCTTTGAAGAACTTAATGGATCAACTCATAAGCTAACAGATGCTAGAATGGATGGTAATACTGGAGTCAAAGATGAAATTATTGAAGATAGGTTGACCACTAACATAAATGTGCAGCCTGTCACAACCCCTTCACTGAAAGAAGCTCGGGGTCATTCTGATCCTCACACGGTACCTTTTTCTACTGCCCAAGTTAAGAAAAGTTCTGGAGATGCTGGTGTGCGTAGTAGAGGTGAGCCAGTAGAGCTGAAGAAACTTGACAGCTTTGGTCGATGGATGGATAGAGAAATTGGTGTGGATTGTGATGATTCATTGATGGCTTCAGACTCTGGCAATTACTGGAGTACACTTGAGGCTGAGAATGGTGATAGGGAAGTTTCCAGTTTATCAGGCCATATGCAGCTAGATGTTGATTCACTTGGCCCTTCTCTTTCCCAGGAACAACTGTTCAGTATCTGTGATTTTTCACCAGATTGGTCTTATTCAGGAACTGAATCAAAGGTTTTAATAGCTGGAAGATTTTTAGGAAGCAAGAGAAATTCTACGGACACTAAGTGGGGATGCATGTTTGGTGAAATAGAGGTTTCTGCTGAAGTTCTGACCGATAATGTTATTCGATGTCGAACTCCTTTACATGCTCCTGGGTGTGTTCCATTTTATGTGACCTGCAGAAATAGGTTGGCCTGCAGTGAGGTGAGGGAGTTTGAATATAGAGAACAACCCGTGGGGATAGCTGTAAACAGCTCTAGAGAATATGAGTTGAGCTTTCAATTACGTCTTGCAAAATTGTTGAACTTGGGATCAGAAAGGAAGTGGTTGGAATGTTCTGCTTTGGATTGTGATAAATGTAAGCTCAGAAGTTCCCTGTGTTCAATAAGAAGCAGCTGCGGGAGTGATTGGGTAATAGCTGATGGAGCTTCTATGGCATGCAAAAGCGATCAGCTGACCCACAGAGATGTATTGATTCAGAATTTGCTGAAGGATAGACTTTTTGAATGGCTGGTCTGTAAAGTTCATGAAGAAGGTAAAGGACCACATGTTCTAGATAATGATGGCCAAGGCGTTCTACATTTGACAGCTGCTCTTGGTTATGAGTGGGCGATGGGCCTCATAGTTTCTGCTGGTGTCAGTCCTAACTTCAGAGACGCACATGGAAGAACCGGACTTCACTGGGCATCATATTATGGAAGAGAGGAAACAGTCATCACATTACTTGGATTGGGTGCTGCTCCAGGTGCTGTTGAGGACCCAACGCCAGAATTTCCTGGAGGACAAACAGCCGCTGATCTAGCCTCAAGTAGAGGCCACAAAGGGATTGCTGGATATTTGGCAGAAGCTGATCTAACCAGTCACCTGTCATTGTTGACCGTCAATGATAAAACATTGGACAACGTTTCTGCAACTATTGCAGCTGAAAAGGCTATTGAGACTTCAGAAGCTGTTACATCTGATGTGACGGTAGATGATGAGAACTCTCTCGAAGGCTCTCTAGCAGCAGTTAGGAAATCAGCCCATGCGGCTGCTTTGATTCAAGCAACATTCCGTGCTCGTTCATTCCGCCAGAGACAGTTAAGTCAGAGCAGCAGTGATATTTCTGAAGCTTCTATTGACCTAGTTGCACTTGGTTCCTTGAAAAGAGTTCAAAAGTTTAGTCACTATGAAGATTATCTGCATTCTGCAGCAGCTCTGAAGATACAAAGAAAGTATCGTGGTTGGAAGGGGAGAAAGGAATTTTTGAAGATACGTAACCGTATTGTTAAAATTCAGGCTCATGTCAGGGGACATCAGGTTCGTAAGACTTACAAAAAGCTTGTTTGGTCTGTTGGTATAATGGAGAAAGTAATATTGCGTTGGAGGCGAAAACGGCCTGGTTTGCGAGGATTTCGGGTGGAAAAAGCTGTTGATACATCTTCAGAGAATAAAAGAAGTGATGACTATGATTTTTTGAGTGTTGGGAGGAAGCAGAAATTTGCTGGAGTGGAGAAAGCTCTTGCAAGGGTACAGTCCATGTCTCGTCACCCTGAAGCTCGTGAACAGTATATGAGGTTACAGTTGAAGTTTGAGAAGCTGAAGATGGTTGATGTGAGTGGTGCCTCGAACAAAGTTGAAGGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 CG-1 IQ TIG

Protein Analysis

988

Amino Acids

110.09

Weight (kDa)

8.34

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CG-1 PF03859 22 - 133 1.7e-49 CG-1 domain
Ank_2 PF12796 615 - 693 9.1e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2418
Acc16I TGCGCA 1 cut(s) 110
Acc36I ACCTGC 2 cut(s) 813, 1520
Acc65I GGTACC 2 cut(s) 629, 1018
AccB1I GGYRCC 3 cut(s) 629, 1018, 2936
AccB7I CCANNNNNTGG 1 cut(s) 683
AciI CCGC 7 cut(s) 143, 220, 340, 1734, 2127, 2363, 2404
AclI AACGTT 1 cut(s) 2238
AclWI GGATC 6 cut(s) 134, 437, 457, 874, 1001, 1654
AcoI YGGCCR 1 cut(s) 1900
AcsI RAATTY 9 cut(s) 93, 331, 584, 1384, 1816, 2105, 2576, 2607, 2813
AdeI CACNNNGTG 1 cut(s) 1401
AfaI GTAC 4 cut(s) 631, 1020, 1192, 2847
AfiI CCNNNNNNNGG 5 cut(s) 161, 319, 436, 644, 683
AflIII ACRYGT 1 cut(s) 1882
AjnI CCWGG 7 cut(s) 445, 643, 1281, 1486, 2077, 2110, 2713
AloI GAACNNNNNNTCC 6 cut(s) 1277, 1309, 1869, 1901, 2619, 2651
Alw21I GWGCWC 1 cut(s) 2395
Alw26I GTCTC 5 cut(s) 430, 1983, 2267, 2404, 2862
AlwI GGATC 6 cut(s) 134, 437, 457, 874, 1001, 1654
AlwNI CAGNNNCTG 7 cut(s) 1175, 1302, 1337, 2084, 2129, 2183, 2285
Ama87I CYCGRG 1 cut(s) 993
AoxI GGCC 8 cut(s) 152, 1237, 1267, 1527, 1900, 1951, 2149, 2711
ApoI RAATTY 9 cut(s) 93, 331, 584, 1384, 1816, 2105, 2576, 2607, 2813
ArsI GACNNNNNNTTYG 4 cut(s) 2482, 2514, 2619, 2651
Asp700I GAANNNNTTC 1 cut(s) 691
Asp718I GGTACC 2 cut(s) 629, 1018
AspLEI GCGC 2 cut(s) 111, 514
AspS9I GGNCC 5 cut(s) 734, 1268, 1877, 1951, 2092
AsuC2I CCSGG 1 cut(s) 606
AvaI CYCGRG 1 cut(s) 993
AvaII GGWCC 3 cut(s) 734, 1877, 2092
BalI TGGCCA 1 cut(s) 1902
BanI GGYRCC 3 cut(s) 629, 1018, 2936
BauI CACGAG 1 cut(s) 2874
BbsI GAAGAC 2 cut(s) 694, 837
Bbv12I GWGCWC 1 cut(s) 2395
BccI CCATC 9 cut(s) 206, 893, 1113, 1117, 1156, 1751, 1892, 1942, 2914
BceAI ACGGC 1 cut(s) 2726
BciT130I CCWGG 7 cut(s) 447, 645, 1283, 1488, 2079, 2112, 2715
BcnI CCSGG 1 cut(s) 606
BcoDI GTCTC 5 cut(s) 430, 1983, 2267, 2404, 2862
BfaI CTAG 8 cut(s) 38, 891, 1250, 1593, 1889, 2135, 2336, 2459
BfmI CTRYAG 6 cut(s) 516, 579, 668, 1513, 1531, 2523
BfuAI ACCTGC 2 cut(s) 813, 1520
BglI GCCNNNNNGGC 2 cut(s) 151, 2363
Bme1390I CCNGG 8 cut(s) 447, 606, 645, 1283, 1488, 2079, 2112, 2715
Bme18I GGWCC 3 cut(s) 734, 1877, 2092
BmeT110I CYCGRG 1 cut(s) 993
BmgT120I GGNCC 5 cut(s) 734, 1268, 1877, 1951, 2092
BmiI GGNNCC 5 cut(s) 631, 1020, 2094, 2473, 2938
BmrFI CCNGG 8 cut(s) 447, 606, 645, 1283, 1488, 2079, 2112, 2715
BmrI ACTGGG 2 cut(s) 778, 2026
BmsI GCATC 8 cut(s) 345, 485, 601, 765, 877, 1048, 1397, 2030
BmuI ACTGGG 2 cut(s) 778, 2026
BpiI GAAGAC 2 cut(s) 694, 837
BpmI CTGGAG 9 cut(s) 141, 244, 636, 930, 1074, 1207, 2061, 2133, 2841
BpuEI CTTGAG 2 cut(s) 1217, 2125
BpuMI CCSGG 1 cut(s) 606
BsaAI YACGTR 1 cut(s) 2591
BsaJI CCNNGG 5 cut(s) 313, 1281, 1487, 1569, 1903
BsaWI WCCGGW 1 cut(s) 2006
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 319, 436, 644, 683
Bse1I ACTGG 7 cut(s) 773, 913, 1085, 1190, 1227, 2021, 2193
BseBI CCWGG 7 cut(s) 447, 645, 1283, 1488, 2079, 2112, 2715
BseDI CCNNGG 5 cut(s) 313, 1281, 1487, 1569, 1903
BseGI GGATG 4 cut(s) 360, 904, 1128, 1412
BseLI CCNNNNNNNGG 5 cut(s) 161, 319, 436, 644, 683
BseMII CTCAG 4 cut(s) 687, 786, 1194, 1714
BseNI ACTGG 7 cut(s) 773, 913, 1085, 1190, 1227, 2021, 2193
BseRI GAGGAG 1 cut(s) 358
BsgI GTGCAG 2 cut(s) 477, 980
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 8 cut(s) 154, 1239, 1269, 1529, 1902, 1953, 2151, 2713
BshNI GGYRCC 3 cut(s) 629, 1018, 2936
BsiEI CGRYCG 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 2395
BsiHKCI CYCGRG 1 cut(s) 993
BsiSI CCGG 3 cut(s) 605, 732, 2007
BslFI GGGAC 1 cut(s) 2640
BslI CCNNNNNNNGG 5 cut(s) 161, 319, 436, 644, 683
BsmAI GTCTC 5 cut(s) 430, 1983, 2267, 2404, 2862
BsmBI CGTCTC 1 cut(s) 1983
BsmFI GGGAC 1 cut(s) 2640
BsmI GAATGC 2 cut(s) 664, 2518
BsnI GGCC 8 cut(s) 154, 1239, 1269, 1529, 1902, 1953, 2151, 2713
BsoBI CYCGRG 1 cut(s) 993
Bsp1286I GDGCHC 1 cut(s) 2395
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 7 cut(s) 143, 220, 340, 1734, 2127, 2363, 2404
BspANI GGCC 8 cut(s) 154, 1239, 1269, 1529, 1902, 1953, 2151, 2713
BspCNI CTCAG 4 cut(s) 688, 787, 1195, 1713
BspHI TCATGA 1 cut(s) 1861
BspLI GGNNCC 5 cut(s) 631, 1020, 2094, 2473, 2938
BspMAI CTGCAG 4 cut(s) 672, 1517, 1535, 2527
BspMI ACCTGC 2 cut(s) 813, 1520
BspPI GGATC 6 cut(s) 134, 437, 457, 874, 1001, 1654
BspT107I GGYRCC 3 cut(s) 629, 1018, 2936
BsrI ACTGG 7 cut(s) 773, 913, 1085, 1190, 1227, 2021, 2193
BssECI CCNNGG 5 cut(s) 313, 1281, 1487, 1569, 1903
BssSI CACGAG 1 cut(s) 2874
BssT1I CCWWGG 2 cut(s) 313, 1903
Bst2BI CACGAG 1 cut(s) 2874
Bst2UI CCWGG 7 cut(s) 447, 645, 1283, 1488, 2079, 2112, 2715
Bst6I CTCTTC 1 cut(s) 2029
BstAPI GCANNNNNTGC 1 cut(s) 2252
BstBAI YACGTR 1 cut(s) 2591
BstC8I GCNNGC 2 cut(s) 1531, 1774
BstDEI CTNAG 6 cut(s) 6, 696, 795, 1203, 1398, 1700
BstDSI CCRYGG 2 cut(s) 313, 1569
BstEII GGTNACC 1 cut(s) 215
BstF5I GGATG 4 cut(s) 360, 904, 1128, 1412
BstHHI GCGC 2 cut(s) 111, 514
BstMAI GTCTC 5 cut(s) 430, 1983, 2267, 2404, 2862
BstMCI CGRYCG 1 cut(s) 86
BstNI CCWGG 7 cut(s) 447, 645, 1283, 1488, 2079, 2112, 2715
BstNSI RCATGY 4 cut(s) 1414, 1484, 1776, 1886
BstPI GGTNACC 1 cut(s) 215
BstSCI CCNGG 8 cut(s) 445, 604, 643, 1281, 1486, 2077, 2110, 2713
BstSFI CTRYAG 6 cut(s) 516, 579, 668, 1513, 1531, 2523
BstSNI TACGTA 1 cut(s) 2591
BstV2I GAAGAC 2 cut(s) 694, 837
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 8 cut(s) 154, 1239, 1269, 1529, 1902, 1953, 2151, 2713
BtgI CCRYGG 2 cut(s) 313, 1569
BtgZI GCGATG 2 cut(s) 788, 1961
BtsCI GGATG 4 cut(s) 360, 904, 1128, 1412
BtsI GCAGTG 2 cut(s) 1540, 2437
BtsIMutI CAGTG 5 cut(s) 298, 980, 1540, 2014, 2437
BveI ACCTGC 2 cut(s) 813, 1520
Cac8I GCNNGC 2 cut(s) 1531, 1774
CaiI CAGNNNCTG 7 cut(s) 1175, 1302, 1337, 2084, 2129, 2183, 2285
CciI TCATGA 1 cut(s) 1861
CfoI GCGC 2 cut(s) 111, 514
Cfr13I GGNCC 5 cut(s) 734, 1268, 1877, 1951, 2092
CseI GACGC 1 cut(s) 2000
Csp6I GTAC 4 cut(s) 630, 1019, 1191, 2846
CviQI GTAC 4 cut(s) 630, 1019, 1191, 2846
DdeI CTNAG 6 cut(s) 6, 696, 795, 1203, 1398, 1700
DraIII CACNNNGTG 1 cut(s) 1401
DrdI GACNNNNNNGTC 1 cut(s) 2418
DseDI GACNNNNNNGTC 1 cut(s) 2418
EaeI YGGCCR 1 cut(s) 1900
Eam1104I CTCTTC 1 cut(s) 2029
EarI CTCTTC 1 cut(s) 2029
EciI GGCGGA 2 cut(s) 132, 2393
Eco105I TACGTA 1 cut(s) 2591
Eco130I CCWWGG 2 cut(s) 313, 1903
Eco147I AGGCCT 1 cut(s) 154
Eco47I GGWCC 3 cut(s) 734, 1877, 2092
Eco88I CYCGRG 1 cut(s) 993
Eco91I GGTNACC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 2092
EcoO65I GGTNACC 1 cut(s) 215
EcoRII CCWGG 7 cut(s) 445, 643, 1281, 1486, 2077, 2110, 2713
EcoT14I CCWWGG 2 cut(s) 313, 1903
EcoT22I ATGCAT 1 cut(s) 1412
ErhI CCWWGG 2 cut(s) 313, 1903
Esp3I CGTCTC 1 cut(s) 1983
FaqI GGGAC 1 cut(s) 2640
FauI CCCGC 1 cut(s) 1727
FauNDI CATATG 1 cut(s) 1242
FokI GGATG 4 cut(s) 367, 911, 1135, 1419
FspBI CTAG 8 cut(s) 38, 891, 1250, 1593, 1889, 2135, 2336, 2459
FspI TGCGCA 1 cut(s) 110
GlaI GCGC 2 cut(s) 110, 513
GsuI CTGGAG 9 cut(s) 141, 244, 636, 930, 1074, 1207, 2061, 2133, 2841
HaeIII GGCC 8 cut(s) 154, 1239, 1269, 1529, 1902, 1953, 2151, 2713
HapII CCGG 3 cut(s) 605, 732, 2007
HgaI GACGC 1 cut(s) 2000
HhaI GCGC 2 cut(s) 111, 514
Hin6I GCGC 2 cut(s) 109, 512
HinP1I GCGC 2 cut(s) 109, 512
HincII GTYRAC 2 cut(s) 942, 2211
HindII GTYRAC 2 cut(s) 942, 2211
HindIII AAGCTT 2 cut(s) 2445, 2654
HpaII CCGG 3 cut(s) 605, 732, 2007
Hpy166II GTNNAC 6 cut(s) 289, 942, 1193, 1585, 2211, 2879
Hpy188III TCNNGA 9 cut(s) 706, 717, 1053, 1332, 1593, 1862, 1889, 2324, 2876
Hpy8I GTNNAC 6 cut(s) 289, 942, 1193, 1585, 2211, 2879
HpyAV CCTTC 9 cut(s) 268, 723, 987, 1281, 1819, 1862, 2321, 2557, 2948
HpyCH4IV ACGT 4 cut(s) 291, 1621, 2238, 2590
HpyF3I CTNAG 6 cut(s) 6, 696, 795, 1203, 1398, 1700
HpySE526I ACGT 4 cut(s) 291, 1621, 2238, 2590
HspAI GCGC 2 cut(s) 109, 512
KpnI GGTACC 2 cut(s) 633, 1022
LmnI GCTCC 4 cut(s) 617, 1489, 1760, 2080
LweI GCATC 8 cut(s) 345, 485, 601, 765, 877, 1048, 1397, 2030
MaeI CTAG 8 cut(s) 38, 891, 1250, 1593, 1889, 2135, 2336, 2459
MaeII ACGT 4 cut(s) 291, 1621, 2238, 2590
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 2395
MlsI TGGCCA 1 cut(s) 1902
MluNI TGGCCA 1 cut(s) 1902
MlyI GAGTC 3 cut(s) 707, 921, 1166
MmeI TCCRAC 5 cut(s) 439, 664, 1644, 2540, 2678
Mox20I TGGCCA 1 cut(s) 1902
Mph1103I ATGCAT 1 cut(s) 1412
MroXI GAANNNNTTC 1 cut(s) 691
MscI TGGCCA 1 cut(s) 1902
MseI TTAA 5 cut(s) 861, 1041, 1352, 2417, 2604
MslI CAYNNNNRTG 2 cut(s) 956, 1800
Msp20I TGGCCA 1 cut(s) 1902
MspA1I CMGCKG 8 cut(s) 161, 222, 340, 1731, 1789, 1925, 2129, 2258
MspI CCGG 3 cut(s) 605, 732, 2007
MspR9I CCNGG 8 cut(s) 447, 606, 645, 1283, 1488, 2079, 2112, 2715
Mva1269I GAATGC 2 cut(s) 664, 2518
MvaI CCWGG 7 cut(s) 447, 645, 1283, 1488, 2079, 2112, 2715
NciI CCSGG 1 cut(s) 606
NcoI CCATGG 1 cut(s) 313
NdeI CATATG 1 cut(s) 1242
NlaIV GGNNCC 5 cut(s) 631, 1020, 2094, 2473, 2938
NmuCI GTSAC 8 cut(s) 215, 672, 967, 1507, 2195, 2299, 2498, 2861
NsbI TGCGCA 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 1412
NspI RCATGY 4 cut(s) 1414, 1484, 1776, 1886
PaeI GCATGC 1 cut(s) 1776
PagI TCATGA 1 cut(s) 1861
PceI AGGCCT 1 cut(s) 154
PciI ACATGT 1 cut(s) 1882
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PctI GAATGC 2 cut(s) 664, 2518
PdmI GAANNNNTTC 1 cut(s) 691
PfeI GAWTC 8 cut(s) 62, 599, 709, 1154, 1259, 1340, 1810, 2374
PflMI CCANNNNNTGG 1 cut(s) 683
PfoI TCCNGGA 2 cut(s) 445, 2110
PleI GAGTC 3 cut(s) 706, 920, 1166
PpsI GAGTC 3 cut(s) 706, 920, 1166
Ppu21I YACGTR 1 cut(s) 2591
PpuMI RGGWCCY 1 cut(s) 2092
PscI ACATGT 1 cut(s) 1882
Psp1406I AACGTT 1 cut(s) 2238
Psp5II RGGWCCY 1 cut(s) 2092
Psp6I CCWGG 7 cut(s) 445, 643, 1281, 1486, 2077, 2110, 2713
PspEI GGTNACC 1 cut(s) 215
PspGI CCWGG 7 cut(s) 445, 643, 1281, 1486, 2077, 2110, 2713
PspN4I GGNNCC 5 cut(s) 631, 1020, 2094, 2473, 2938
PspPI GGNCC 5 cut(s) 734, 1268, 1877, 1951, 2092
PspPPI RGGWCCY 1 cut(s) 2092
PstI CTGCAG 4 cut(s) 672, 1517, 1535, 2527
PstNI CAGNNNCTG 7 cut(s) 1175, 1302, 1337, 2084, 2129, 2183, 2285
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 5 cut(s) 161, 1731, 1789, 1925, 2258
RsaI GTAC 4 cut(s) 631, 1020, 1192, 2847
RsaNI GTAC 4 cut(s) 630, 1019, 1191, 2846
RseI CAYNNNNRTG 2 cut(s) 956, 1800
SaqAI TTAA 5 cut(s) 861, 1041, 1352, 2417, 2604
Sau96I GGNCC 5 cut(s) 734, 1268, 1877, 1951, 2092
SchI GAGTC 3 cut(s) 707, 921, 1166
ScrFI CCNGG 8 cut(s) 447, 606, 645, 1283, 1488, 2079, 2112, 2715
SduI GDGCHC 1 cut(s) 2395
SfaNI GCATC 8 cut(s) 345, 485, 601, 765, 877, 1048, 1397, 2030
SfcI CTRYAG 6 cut(s) 516, 579, 668, 1513, 1531, 2523
SinI GGWCC 3 cut(s) 734, 1877, 2092
SmiMI CAYNNNNRTG 2 cut(s) 956, 1800
SmlI CTYRAG 2 cut(s) 1196, 2140
SmoI CTYRAG 2 cut(s) 1196, 2140
SnaBI TACGTA 1 cut(s) 2591
SphI GCATGC 1 cut(s) 1776
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 7 cut(s) 143, 220, 340, 1734, 2127, 2363, 2404
SspI AATATT 1 cut(s) 2691
SspMI CTAG 8 cut(s) 38, 891, 1250, 1593, 1889, 2135, 2336, 2459
StuI AGGCCT 1 cut(s) 154
StyD4I CCNGG 8 cut(s) 445, 604, 643, 1281, 1486, 2077, 2110, 2713
StyI CCWWGG 2 cut(s) 313, 1903
TaiI ACGT 4 cut(s) 294, 1624, 2241, 2593
TaqI TCGA 7 cut(s) 82, 405, 1117, 1462, 1468, 2325, 2942
TaqII GACCGA 2 cut(s) 100, 1463
TatI WGTACW 1 cut(s) 1190
TauI GCSGC 2 cut(s) 2129, 2366
TfiI GAWTC 8 cut(s) 62, 599, 709, 1154, 1259, 1340, 1810, 2374
Tru1I TTAA 5 cut(s) 861, 1041, 1352, 2417, 2604
Tru9I TTAA 5 cut(s) 861, 1041, 1352, 2417, 2604
TscAI CASTG 5 cut(s) 305, 987, 1540, 2021, 2437
TseFI GTSAC 8 cut(s) 215, 672, 967, 1507, 2195, 2299, 2498, 2861
Tsp45I GTSAC 8 cut(s) 215, 672, 967, 1507, 2195, 2299, 2498, 2861
TspDTI ATGAA 9 cut(s) 279, 750, 825, 936, 1146, 1850, 1878, 2388, 2520
TspGWI ACGGA 3 cut(s) 255, 1406, 2378
TspRI CASTG 5 cut(s) 305, 987, 1540, 2021, 2437
Van91I CCANNNNNTGG 1 cut(s) 683
VpaK11BI GGWCC 3 cut(s) 734, 1877, 2092
XapI RAATTY 9 cut(s) 93, 331, 584, 1384, 1816, 2105, 2576, 2607, 2813
XbaI TCTAGA 2 cut(s) 1592, 1888
XceI RCATGY 4 cut(s) 1414, 1484, 1776, 1886
XcmI CCANNNNNNNNNTGG 1 cut(s) 641
XmnI GAANNNNTTC 1 cut(s) 691
XspI CTAG 8 cut(s) 38, 891, 1250, 1593, 1889, 2135, 2336, 2459
Zsp2I ATGCAT 1 cut(s) 1412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.